Wall clock time and date at job start Mon Mar 30 2020 04:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47915 * 110.99840 * 2 1 4 4 C 1.54592 * 102.63488 * 94.57970 * 3 2 1 5 5 C 1.51581 * 102.82876 * 25.56152 * 4 3 2 6 6 C 1.39006 * 107.94769 * 343.96069 * 5 4 3 7 7 C 1.39357 * 119.08785 * 179.58726 * 6 5 4 8 8 C 1.37951 * 120.19899 * 0.14131 * 7 6 5 9 9 C 1.38264 * 120.26554 * 0.05053 * 8 7 6 10 10 C 1.37877 * 131.56445 * 163.80121 * 5 4 3 11 11 C 1.50702 * 119.96128 * 0.42482 * 10 5 4 12 12 H 1.08999 * 109.46986 * 0.02562 * 11 10 5 13 13 C 1.50692 * 109.47068 * 239.99775 * 11 10 5 14 14 H 1.08004 * 120.00630 * 274.94935 * 13 11 10 15 15 C 1.37884 * 119.99792 * 94.95503 * 13 11 10 16 16 N 1.31506 * 119.99709 * 5.31101 * 15 13 11 17 17 Si 1.86803 * 120.00022 * 185.31367 * 15 13 11 18 18 H 1.48500 * 109.47044 * 59.99735 * 17 15 13 19 19 H 1.48496 * 109.47143 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47007 * 300.00040 * 17 15 13 21 21 C 1.53001 * 109.46649 * 120.00075 * 11 10 5 22 22 N 1.46901 * 109.46772 * 185.35343 * 21 11 10 23 23 H 1.09003 * 109.46513 * 300.00777 * 1 2 3 24 24 H 1.09001 * 109.47256 * 60.00264 * 1 2 3 25 25 H 1.09000 * 109.47085 * 180.02562 * 1 2 3 26 26 H 1.09004 * 110.77383 * 212.86346 * 3 2 1 27 27 H 1.08994 * 110.77686 * 336.28817 * 3 2 1 28 28 H 1.08996 * 110.74742 * 143.89877 * 4 3 2 29 29 H 1.09000 * 110.74273 * 267.04813 * 4 3 2 30 30 H 1.08001 * 119.90481 * 180.12364 * 7 6 5 31 31 H 1.08003 * 119.87196 * 179.76432 * 8 7 6 32 32 H 1.07997 * 120.06018 * 179.86494 * 9 8 7 33 33 H 0.97008 * 119.99934 * 180.02562 * 16 15 13 34 34 H 1.08994 * 109.47567 * 305.35269 * 21 11 10 35 35 H 1.09004 * 109.47423 * 65.35332 * 21 11 10 36 36 H 1.00899 * 110.99762 * 56.04744 * 22 21 11 37 37 H 1.00909 * 110.99983 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3809 0.0000 4 6 2.2327 1.6535 1.5037 5 6 2.4325 0.2620 2.0708 6 6 1.9709 -0.6535 1.1322 7 6 2.0536 -2.0153 1.4165 8 6 2.5847 -2.4428 2.6158 9 6 3.0375 -1.5239 3.5444 10 6 2.9599 -0.1703 3.2691 11 6 3.4518 0.8328 4.2805 12 1 3.3096 1.8409 3.8912 13 6 4.9162 0.5992 4.5485 14 1 5.2210 -0.1332 5.2815 15 6 5.8670 1.3205 3.8580 16 7 5.4976 2.2840 3.0429 17 14 7.6800 0.9288 4.0803 18 1 7.9353 -0.4779 3.6790 19 1 8.4907 1.8398 3.2330 20 1 8.0550 1.1128 5.5053 21 6 2.6633 0.6732 5.5820 22 7 3.0524 1.7320 6.5231 23 1 -0.3632 0.5140 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.9368 1.4351 -0.5530 27 1 1.2665 2.0762 -0.4098 28 1 3.1245 2.2624 1.6517 29 1 1.3612 2.1333 1.9490 30 1 1.7007 -2.7381 0.6958 31 1 2.6428 -3.4993 2.8322 32 1 3.4506 -1.8622 4.4831 33 1 6.1665 2.7913 2.5568 34 1 1.5964 0.7479 5.3720 35 1 2.8799 -0.3007 6.0210 36 1 2.9215 2.6451 6.1143 37 1 2.5454 1.6482 7.3915 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261050700.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:52 Heat of formation + Delta-G solvation = 16.464501 kcal Electronic energy + Delta-G solvation = -18280.566148 eV Core-core repulsion = 15635.600234 eV Total energy + Delta-G solvation = -2644.965914 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.56039 -38.25253 -36.33888 -34.17788 -33.17686 -31.42880 -29.90668 -28.48531 -26.65683 -26.06133 -23.83281 -22.62966 -21.92662 -20.48028 -18.40096 -17.39248 -16.88133 -16.56328 -16.36743 -16.12813 -15.80332 -15.26720 -14.81743 -14.40085 -14.10574 -13.90883 -13.84091 -13.33262 -13.23886 -12.93827 -12.78953 -12.74459 -12.68254 -12.40980 -12.24851 -11.91533 -11.66263 -11.23349 -10.98504 -10.44626 -10.17738 -9.31144 -9.16638 -8.70480 -8.02619 -6.03748 0.61358 0.76154 1.42326 1.43072 1.49063 2.48396 2.83750 3.02197 3.30151 3.88539 3.97284 4.09329 4.15258 4.30128 4.36288 4.51345 4.56774 4.59480 4.64571 4.67551 4.80945 4.84741 4.90468 4.95632 5.09358 5.22861 5.32982 5.45999 5.61512 5.64903 5.75719 5.82451 5.94378 6.08551 6.21566 6.36352 6.53753 6.57287 6.87484 7.02729 7.56417 9.04614 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020673 B = 0.008475 C = 0.007951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.085658 B = 3302.993337 C = 3520.940431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.502 5.502 3 C 0.057 3.943 4 C -0.104 4.104 5 C -0.158 4.158 6 C 0.067 3.933 7 C -0.141 4.141 8 C -0.108 4.108 9 C -0.143 4.143 10 C -0.025 4.025 11 C 0.068 3.932 12 H 0.039 0.961 13 C -0.481 4.481 14 H 0.043 0.957 15 C 0.020 3.980 16 N -0.912 5.912 17 Si 0.938 3.062 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.275 1.275 21 C 0.089 3.911 22 N -0.841 5.841 23 H 0.024 0.976 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.136 0.864 31 H 0.148 0.852 32 H 0.115 0.885 33 H 0.255 0.745 34 H 0.003 0.997 35 H 0.054 0.946 36 H 0.336 0.664 37 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.478 -3.902 -3.508 11.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.219 5.219 3 C -0.070 4.070 4 C -0.143 4.143 5 C -0.160 4.160 6 C -0.029 4.029 7 C -0.161 4.161 8 C -0.126 4.126 9 C -0.162 4.162 10 C -0.027 4.027 11 C 0.048 3.952 12 H 0.057 0.943 13 C -0.519 4.519 14 H 0.061 0.939 15 C -0.179 4.179 16 N -0.552 5.552 17 Si 0.766 3.234 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.200 1.200 21 C -0.042 4.042 22 N -0.370 5.370 23 H 0.042 0.958 24 H 0.113 0.887 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.127 0.873 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.154 0.846 31 H 0.166 0.834 32 H 0.133 0.867 33 H 0.064 0.936 34 H 0.021 0.979 35 H 0.073 0.927 36 H 0.148 0.852 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.566 -4.331 -4.176 11.300 hybrid contribution 0.216 0.782 0.805 1.143 sum -9.350 -3.549 -3.372 10.554 Atomic orbital electron populations 1.22521 0.84473 1.03102 1.01523 1.60322 1.09563 1.14846 1.37205 1.23132 1.01141 0.88109 0.94625 1.21529 1.01930 0.94611 0.96188 1.20997 1.03861 0.96070 0.95091 1.19793 0.99341 0.94098 0.89652 1.20492 1.04673 0.92597 0.98298 1.21122 0.98298 1.00118 0.93112 1.21001 1.02128 0.92525 1.00501 1.20082 0.91827 0.95612 0.95131 1.17899 0.93644 0.94138 0.89471 0.94257 1.20937 0.90912 1.20175 1.19875 0.93910 1.25490 1.01770 0.94980 0.95622 1.69967 1.34021 1.21712 1.29503 0.85923 0.81987 0.77699 0.77833 1.20479 1.21439 1.20012 1.21678 0.93885 0.94677 0.93945 1.58417 1.65361 1.05953 1.07313 0.95756 0.88725 0.90522 0.90748 0.87329 0.90739 0.91184 0.84598 0.83430 0.86659 0.93563 0.97872 0.92728 0.85191 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.29 127.69 1.19 1.91 16 2 N -0.50 -16.22 5.33 -713.41 -3.80 -20.02 16 3 C 0.06 1.82 7.00 86.65 0.61 2.42 16 4 C -0.10 -4.11 6.18 30.67 0.19 -3.92 16 5 C -0.16 -6.77 6.06 -19.48 -0.12 -6.89 16 6 C 0.07 2.52 5.59 38.28 0.21 2.73 16 7 C -0.14 -4.81 10.07 22.47 0.23 -4.58 16 8 C -0.11 -3.71 10.02 22.21 0.22 -3.49 16 9 C -0.14 -5.84 8.88 22.30 0.20 -5.64 16 10 C -0.02 -1.13 4.76 -19.92 -0.09 -1.23 16 11 C 0.07 3.29 2.25 -12.29 -0.03 3.26 16 12 H 0.04 2.12 6.17 -2.39 -0.01 2.11 16 13 C -0.48 -26.16 7.67 25.60 0.20 -25.96 16 14 H 0.04 2.37 7.82 -2.91 -0.02 2.34 16 15 C 0.02 1.11 5.45 84.66 0.46 1.57 16 16 N -0.91 -52.20 12.77 21.45 0.27 -51.92 16 17 Si 0.94 45.17 29.54 68.60 2.03 47.20 16 18 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 20 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 21 C 0.09 3.70 5.89 86.30 0.51 4.21 16 22 N -0.84 -32.53 9.35 -186.72 -1.75 -34.27 16 23 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.09 1.80 8.11 -2.39 -0.02 1.78 16 25 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 27 H 0.11 2.68 7.76 -2.39 -0.02 2.66 16 28 H 0.07 3.45 7.93 -2.39 -0.02 3.43 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 31 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 32 H 0.12 4.61 7.64 -2.91 -0.02 4.59 16 33 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 34 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.05 2.25 7.58 -2.39 -0.02 2.23 16 36 H 0.34 12.94 8.99 -89.69 -0.81 12.13 16 37 H 0.34 10.53 9.08 -89.69 -0.81 9.72 16 Total: -1.00 -62.89 303.64 -0.03 -62.92 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: -0.55 Total: 31.70 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 3.77 Total: -35.60 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -5.27 Total: -106.21 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -62.89 -0.03 -62.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261050700.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.385 kcal (2) G-P(sol) polarization free energy of solvation -62.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds