Wall clock time and date at job start Mon Mar 30 2020 04:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46418 * 111.00166 * 2 1 4 4 C 1.53377 * 108.66689 * 178.83319 * 3 2 1 5 5 C 1.53044 * 107.91919 * 291.73141 * 4 3 2 6 6 C 1.50800 * 109.64728 * 47.31598 * 5 4 3 7 7 C 1.38619 * 118.12643 * 164.50669 * 6 5 4 8 8 C 1.38046 * 120.49371 * 179.75836 * 7 6 5 9 9 C 1.38317 * 119.88654 * 359.94649 * 8 7 6 10 10 C 1.50699 * 120.02339 * 180.17518 * 9 8 7 11 11 H 1.08996 * 109.46821 * 200.00043 * 10 9 8 12 12 N 1.46911 * 109.46772 * 319.99079 * 10 9 8 13 13 C 1.50694 * 109.47735 * 79.99733 * 10 9 8 14 14 H 1.07998 * 119.99956 * 359.97438 * 13 10 9 15 15 C 1.37881 * 119.99989 * 180.02562 * 13 10 9 16 16 N 1.31508 * 120.00237 * 359.97438 * 15 13 10 17 17 Si 1.86796 * 119.99630 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47232 * 90.00256 * 17 15 13 19 19 H 1.48501 * 109.47254 * 209.99788 * 17 15 13 20 20 H 1.48503 * 109.47529 * 329.99701 * 17 15 13 21 21 C 1.37800 * 119.95214 * 0.14387 * 9 8 7 22 22 C 1.38377 * 122.01678 * 344.46154 * 6 5 4 23 23 H 1.09000 * 109.47043 * 52.17782 * 1 2 3 24 24 H 1.09007 * 109.47005 * 172.17397 * 1 2 3 25 25 H 1.08995 * 109.46804 * 292.17809 * 1 2 3 26 26 H 1.09003 * 109.60374 * 298.59021 * 3 2 1 27 27 H 1.09005 * 109.60586 * 58.91029 * 3 2 1 28 28 H 1.09004 * 109.77067 * 51.33434 * 4 3 2 29 29 H 1.08994 * 109.77361 * 172.07028 * 4 3 2 30 30 H 1.08998 * 109.44172 * 167.37010 * 5 4 3 31 31 H 1.08996 * 109.43891 * 287.26565 * 5 4 3 32 32 H 1.07998 * 119.75052 * 359.73362 * 7 6 5 33 33 H 1.08003 * 120.05877 * 179.97438 * 8 7 6 34 34 H 1.00900 * 110.99997 * 296.05223 * 12 10 9 35 35 H 1.00904 * 110.99616 * 60.00771 * 12 10 9 36 36 H 0.96996 * 120.00446 * 180.02562 * 16 15 13 37 37 H 1.08002 * 119.79303 * 179.97438 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9938 1.3669 0.0000 4 6 3.5260 1.3045 0.0296 5 6 3.9487 0.7566 1.3946 6 6 3.1316 -0.4671 1.7249 7 6 3.5747 -1.2925 2.7466 8 6 2.8619 -2.4228 3.0929 9 6 1.6959 -2.7361 2.4180 10 6 0.9132 -3.9671 2.7962 11 1 0.2591 -4.2493 1.9713 12 7 1.8418 -5.0686 3.0836 13 6 0.0825 -3.6781 4.0198 14 1 0.1180 -2.7009 4.4781 15 6 -0.7222 -4.6617 4.5548 16 7 -0.7651 -5.8518 3.9971 17 14 -1.7514 -4.3036 6.0720 18 1 -3.0810 -3.7881 5.6579 19 1 -1.9271 -5.5519 6.8570 20 1 -1.0643 -3.2861 6.9075 21 6 1.2502 -1.9214 1.3999 22 6 1.9686 -0.7786 1.0429 23 1 -0.3633 0.6302 -0.8118 24 1 -0.3633 -1.0182 -0.1399 25 1 -0.3633 0.3879 0.9516 26 1 1.6661 1.8844 -0.9016 27 1 1.6299 1.8984 0.8794 28 1 3.8834 0.6434 -0.7599 29 1 3.9385 2.3035 -0.1114 30 1 5.0054 0.4907 1.3674 31 1 3.7861 1.5180 2.1573 32 1 4.4845 -1.0497 3.2753 33 1 3.2137 -3.0612 3.8899 34 1 2.3653 -5.3245 2.2598 35 1 2.4595 -4.8313 3.8454 36 1 -1.3314 -6.5437 4.3732 37 1 0.3396 -2.1686 0.8744 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261054263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:19 Heat of formation + Delta-G solvation = 29.360700 kcal Electronic energy + Delta-G solvation = -17902.113453 eV Core-core repulsion = 15257.706760 eV Total energy + Delta-G solvation = -2644.406693 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.17094 -37.00521 -34.53897 -33.60598 -31.47372 -29.41110 -29.10272 -26.91037 -25.87002 -23.82159 -23.22772 -21.16008 -20.94019 -18.72960 -16.47759 -16.14447 -15.83105 -15.47214 -14.51834 -14.33533 -14.27985 -13.89257 -13.67462 -13.21061 -13.06970 -12.73964 -12.34633 -12.17840 -11.85342 -11.67013 -11.39351 -11.03514 -10.96234 -10.75589 -10.69991 -10.41454 -10.30438 -9.76982 -9.44714 -9.11078 -8.41043 -7.87176 -7.28019 -6.97732 -5.85414 -4.00062 2.01385 2.04874 3.34275 3.41352 3.44571 3.90815 4.39651 4.54601 4.79024 4.91700 5.03151 5.20174 5.39298 5.47751 5.50151 5.54910 5.59814 5.64141 5.82780 5.85124 5.92606 5.96299 6.08180 6.13802 6.21383 6.30394 6.41852 6.66792 6.75958 7.04401 7.18001 7.25645 7.42792 7.67312 7.82330 7.93142 8.22663 8.67262 9.05003 9.18368 9.68214 11.18920 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030412 B = 0.006168 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.479734 B = 4538.720293 C = 4828.564595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.499 5.499 3 C 0.058 3.942 4 C -0.120 4.120 5 C -0.071 4.071 6 C -0.153 4.153 7 C -0.098 4.098 8 C -0.145 4.145 9 C -0.048 4.048 10 C 0.253 3.747 11 H 0.045 0.955 12 N -0.809 5.809 13 C -0.528 4.528 14 H 0.052 0.948 15 C 0.083 3.917 16 N -0.847 5.847 17 Si 0.883 3.117 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.160 4.160 22 C 0.119 3.881 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.038 0.962 26 H 0.078 0.922 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.298 0.702 35 H 0.317 0.683 36 H 0.255 0.745 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.832 12.807 -6.924 16.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.213 5.213 3 C -0.069 4.069 4 C -0.158 4.158 5 C -0.108 4.108 6 C -0.156 4.156 7 C -0.117 4.117 8 C -0.165 4.165 9 C -0.051 4.051 10 C 0.144 3.856 11 H 0.063 0.937 12 N -0.334 5.334 13 C -0.567 4.567 14 H 0.071 0.929 15 C -0.123 4.123 16 N -0.482 5.482 17 Si 0.711 3.289 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.181 4.181 22 C 0.022 3.978 23 H 0.087 0.913 24 H 0.100 0.900 25 H 0.056 0.944 26 H 0.096 0.904 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.134 0.866 34 H 0.108 0.892 35 H 0.130 0.870 36 H 0.065 0.935 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.194 12.013 -7.225 15.326 hybrid contribution -0.080 1.164 1.282 1.733 sum 6.115 13.176 -5.944 15.695 Atomic orbital electron populations 1.22522 0.85215 1.03562 1.00873 1.58185 1.08489 1.12567 1.42095 1.22101 0.95700 0.88038 1.01023 1.21679 0.94736 1.01231 0.98128 1.20400 0.98752 0.95052 0.96567 1.19230 0.97720 0.99082 0.99579 1.20806 0.99286 0.94950 0.96646 1.20840 0.96535 0.97962 1.01120 1.21571 0.93696 0.98430 0.91409 1.18198 0.89296 0.81020 0.97123 0.93742 1.59224 1.22789 1.43248 1.08178 1.20814 1.25561 0.97839 1.12510 0.92937 1.24945 0.95938 0.94947 0.96484 1.70102 1.36601 1.02414 1.39057 0.86768 0.80757 0.77658 0.83704 1.20801 1.21234 1.20057 1.21059 1.00996 0.95603 1.00419 1.18527 0.94848 0.94547 0.89889 0.91281 0.89984 0.94357 0.90370 0.94049 0.90788 0.91091 0.91223 0.91674 0.87181 0.86635 0.89177 0.87006 0.93466 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.88 60.07 0.53 0.86 16 2 N -0.50 -7.52 4.78 -179.13 -0.86 -8.38 16 3 C 0.06 0.70 5.47 -3.89 -0.02 0.68 16 4 C -0.12 -1.35 6.19 -26.51 -0.16 -1.51 16 5 C -0.07 -0.90 5.81 -27.81 -0.16 -1.06 16 6 C -0.15 -2.54 5.74 -104.38 -0.60 -3.14 16 7 C -0.10 -1.69 9.63 -39.51 -0.38 -2.07 16 8 C -0.15 -2.85 9.29 -39.62 -0.37 -3.22 16 9 C -0.05 -1.04 4.87 -104.75 -0.51 -1.55 16 10 C 0.25 6.33 2.85 -70.01 -0.20 6.13 16 11 H 0.04 1.22 8.00 -51.93 -0.42 0.81 16 12 N -0.81 -19.19 8.36 -6.65 -0.06 -19.25 16 13 C -0.53 -14.61 8.70 -34.44 -0.30 -14.91 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 15 C 0.08 2.34 5.39 -17.82 -0.10 2.25 16 16 N -0.85 -24.76 12.77 55.43 0.71 -24.05 16 17 Si 0.88 21.47 29.54 -169.99 -5.02 16.45 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 C -0.16 -3.20 8.65 -39.23 -0.34 -3.54 16 22 C 0.12 2.12 5.83 -83.85 -0.49 1.63 16 23 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 24 H 0.08 1.16 6.14 -51.93 -0.32 0.84 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.51 8.11 -51.93 -0.42 0.09 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.12 2.22 6.67 -52.48 -0.35 1.87 16 34 H 0.30 6.40 9.06 -39.29 -0.36 6.04 16 35 H 0.32 7.17 7.34 -39.29 -0.29 6.88 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 37 H 0.12 2.37 5.88 -52.49 -0.31 2.06 16 LS Contribution 296.33 15.07 4.47 4.47 Total: -1.00 -30.31 296.33 -9.23 -39.55 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -5.38 Total: 10.65 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -3.10 Total: -19.44 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.20 Total: -51.68 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.31 -9.23 -39.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261054263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.906 kcal (2) G-P(sol) polarization free energy of solvation -30.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds