Wall clock time and date at job start Mon Mar 30 2020 04:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46418 * 111.00166 * 2 1 4 4 C 1.53377 * 108.66689 * 178.83319 * 3 2 1 5 5 C 1.53044 * 107.91919 * 291.73141 * 4 3 2 6 6 C 1.50800 * 109.64728 * 47.31598 * 5 4 3 7 7 C 1.38619 * 118.12643 * 164.50669 * 6 5 4 8 8 C 1.38046 * 120.49371 * 179.75836 * 7 6 5 9 9 C 1.38317 * 119.88654 * 359.94649 * 8 7 6 10 10 C 1.50699 * 120.02339 * 180.17518 * 9 8 7 11 11 H 1.08996 * 109.46821 * 200.00043 * 10 9 8 12 12 N 1.46911 * 109.46772 * 319.99079 * 10 9 8 13 13 C 1.50694 * 109.47735 * 79.99733 * 10 9 8 14 14 H 1.07998 * 119.99956 * 359.97438 * 13 10 9 15 15 C 1.37881 * 119.99989 * 180.02562 * 13 10 9 16 16 N 1.31508 * 120.00237 * 359.97438 * 15 13 10 17 17 Si 1.86796 * 119.99630 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47232 * 90.00256 * 17 15 13 19 19 H 1.48501 * 109.47254 * 209.99788 * 17 15 13 20 20 H 1.48503 * 109.47529 * 329.99701 * 17 15 13 21 21 C 1.37800 * 119.95214 * 0.14387 * 9 8 7 22 22 C 1.38377 * 122.01678 * 344.46154 * 6 5 4 23 23 H 1.09000 * 109.47043 * 52.17782 * 1 2 3 24 24 H 1.09007 * 109.47005 * 172.17397 * 1 2 3 25 25 H 1.08995 * 109.46804 * 292.17809 * 1 2 3 26 26 H 1.09003 * 109.60374 * 298.59021 * 3 2 1 27 27 H 1.09005 * 109.60586 * 58.91029 * 3 2 1 28 28 H 1.09004 * 109.77067 * 51.33434 * 4 3 2 29 29 H 1.08994 * 109.77361 * 172.07028 * 4 3 2 30 30 H 1.08998 * 109.44172 * 167.37010 * 5 4 3 31 31 H 1.08996 * 109.43891 * 287.26565 * 5 4 3 32 32 H 1.07998 * 119.75052 * 359.73362 * 7 6 5 33 33 H 1.08003 * 120.05877 * 179.97438 * 8 7 6 34 34 H 1.00900 * 110.99997 * 296.05223 * 12 10 9 35 35 H 1.00904 * 110.99616 * 60.00771 * 12 10 9 36 36 H 0.96996 * 120.00446 * 180.02562 * 16 15 13 37 37 H 1.08002 * 119.79303 * 179.97438 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9938 1.3669 0.0000 4 6 3.5260 1.3045 0.0296 5 6 3.9487 0.7566 1.3946 6 6 3.1316 -0.4671 1.7249 7 6 3.5747 -1.2925 2.7466 8 6 2.8619 -2.4228 3.0929 9 6 1.6959 -2.7361 2.4180 10 6 0.9132 -3.9671 2.7962 11 1 0.2591 -4.2493 1.9713 12 7 1.8418 -5.0686 3.0836 13 6 0.0825 -3.6781 4.0198 14 1 0.1180 -2.7009 4.4781 15 6 -0.7222 -4.6617 4.5548 16 7 -0.7651 -5.8518 3.9971 17 14 -1.7514 -4.3036 6.0720 18 1 -3.0810 -3.7881 5.6579 19 1 -1.9271 -5.5519 6.8570 20 1 -1.0643 -3.2861 6.9075 21 6 1.2502 -1.9214 1.3999 22 6 1.9686 -0.7786 1.0429 23 1 -0.3633 0.6302 -0.8118 24 1 -0.3633 -1.0182 -0.1399 25 1 -0.3633 0.3879 0.9516 26 1 1.6661 1.8844 -0.9016 27 1 1.6299 1.8984 0.8794 28 1 3.8834 0.6434 -0.7599 29 1 3.9385 2.3035 -0.1114 30 1 5.0054 0.4907 1.3674 31 1 3.7861 1.5180 2.1573 32 1 4.4845 -1.0497 3.2753 33 1 3.2137 -3.0612 3.8899 34 1 2.3653 -5.3245 2.2598 35 1 2.4595 -4.8313 3.8454 36 1 -1.3314 -6.5437 4.3732 37 1 0.3396 -2.1686 0.8744 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261054263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:19 Heat of formation + Delta-G solvation = 9.322823 kcal Electronic energy + Delta-G solvation = -17902.982361 eV Core-core repulsion = 15257.706760 eV Total energy + Delta-G solvation = -2645.275601 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.44433 -38.45120 -36.03921 -35.00426 -33.44740 -30.79158 -30.54237 -28.19898 -27.71865 -25.12577 -24.67079 -22.50449 -22.46273 -20.02717 -18.48220 -17.60626 -17.09921 -16.78540 -16.43954 -15.93398 -15.55196 -15.24606 -15.03199 -14.49547 -14.38010 -14.24471 -13.83829 -13.58074 -13.34505 -12.95324 -12.87449 -12.75147 -12.56116 -12.29874 -12.03108 -11.87674 -11.61720 -11.33471 -11.26264 -10.65012 -10.55973 -9.40358 -8.94374 -8.49930 -7.99349 -6.21428 0.57778 0.60111 1.40626 1.41755 1.51662 2.43999 2.72342 3.05521 3.24140 3.77598 3.92713 3.96509 4.10617 4.28058 4.39317 4.42642 4.49629 4.51151 4.55453 4.64434 4.68296 4.76037 4.89642 4.93050 5.03124 5.05333 5.25291 5.30763 5.34467 5.40542 5.63020 5.73013 5.87869 5.99211 6.15077 6.20078 6.46779 6.64459 7.08987 7.24776 7.50760 9.04027 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030412 B = 0.006168 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.479734 B = 4538.720293 C = 4828.564595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.506 5.506 3 C 0.052 3.948 4 C -0.116 4.116 5 C -0.071 4.071 6 C -0.153 4.153 7 C -0.093 4.093 8 C -0.161 4.161 9 C -0.073 4.073 10 C 0.260 3.740 11 H 0.005 0.995 12 N -0.817 5.817 13 C -0.541 4.541 14 H 0.042 0.958 15 C 0.035 3.965 16 N -0.880 5.880 17 Si 0.949 3.051 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.272 1.272 21 C -0.180 4.180 22 C 0.119 3.881 23 H 0.101 0.899 24 H 0.065 0.935 25 H 0.029 0.971 26 H 0.104 0.896 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.143 0.857 33 H 0.113 0.887 34 H 0.310 0.690 35 H 0.324 0.676 36 H 0.256 0.744 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.102 15.544 -7.069 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.220 5.220 3 C -0.074 4.074 4 C -0.153 4.153 5 C -0.108 4.108 6 C -0.156 4.156 7 C -0.112 4.112 8 C -0.180 4.180 9 C -0.076 4.076 10 C 0.150 3.850 11 H 0.023 0.977 12 N -0.344 5.344 13 C -0.579 4.579 14 H 0.060 0.940 15 C -0.169 4.169 16 N -0.516 5.516 17 Si 0.774 3.226 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.197 1.197 21 C -0.201 4.201 22 C 0.021 3.979 23 H 0.120 0.880 24 H 0.084 0.916 25 H 0.048 0.952 26 H 0.122 0.878 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.124 0.876 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.161 0.839 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.137 0.863 36 H 0.065 0.935 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.466 14.773 -7.384 18.124 hybrid contribution -0.436 0.394 1.221 1.355 sum 7.030 15.166 -6.163 17.816 Atomic orbital electron populations 1.22542 0.84631 1.03290 1.01648 1.58210 1.09117 1.14215 1.40486 1.22328 0.96541 0.86148 1.02356 1.21712 0.93880 1.02936 0.96816 1.20526 0.98948 0.93390 0.97922 1.19790 0.97301 1.00173 0.98347 1.21150 0.99777 0.93633 0.96605 1.20864 0.96400 0.99373 1.01380 1.21191 0.94894 0.98023 0.93448 1.17819 0.89367 0.82991 0.94812 0.97713 1.59040 1.23013 1.43336 1.09041 1.21070 1.26182 0.97346 1.13344 0.93988 1.25688 0.97072 0.94754 0.99350 1.70228 1.37592 1.03249 1.40535 0.85738 0.79167 0.77551 0.80119 1.20170 1.20716 1.19686 1.21061 1.01407 0.96955 1.00724 1.18697 0.94998 0.94014 0.90210 0.88031 0.91627 0.95241 0.87756 0.93995 0.91573 0.87602 0.89386 0.90171 0.83939 0.86925 0.87946 0.86338 0.93493 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 8.88 127.69 1.13 1.78 16 2 N -0.51 -14.42 4.78 -720.63 -3.44 -17.87 16 3 C 0.05 1.08 5.47 86.52 0.47 1.55 16 4 C -0.12 -2.10 6.19 30.74 0.19 -1.91 16 5 C -0.07 -1.51 5.81 29.89 0.17 -1.34 16 6 C -0.15 -4.74 5.74 -19.71 -0.11 -4.85 16 7 C -0.09 -3.03 9.63 22.32 0.21 -2.82 16 8 C -0.16 -6.35 9.29 22.24 0.21 -6.15 16 9 C -0.07 -3.26 4.87 -19.95 -0.10 -3.36 16 10 C 0.26 13.68 2.85 43.42 0.12 13.81 16 11 H 0.00 0.29 8.00 -2.39 -0.02 0.27 16 12 N -0.82 -40.37 8.36 -174.95 -1.46 -41.83 16 13 C -0.54 -30.97 8.70 25.60 0.22 -30.75 16 14 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 15 C 0.03 2.00 5.39 84.66 0.46 2.46 16 16 N -0.88 -52.91 12.77 21.45 0.27 -52.64 16 17 Si 0.95 44.86 29.54 68.60 2.03 46.89 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 20 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 21 C -0.18 -7.48 8.65 22.50 0.19 -7.29 16 22 C 0.12 4.14 5.83 38.30 0.22 4.37 16 23 H 0.10 1.96 8.10 -2.39 -0.02 1.94 16 24 H 0.06 1.92 6.14 -2.38 -0.01 1.90 16 25 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.04 0.89 8.11 -2.38 -0.02 0.87 16 28 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 33 H 0.11 4.39 6.67 -2.91 -0.02 4.37 16 34 H 0.31 13.86 9.06 -89.69 -0.81 13.05 16 35 H 0.32 15.10 7.34 -89.69 -0.66 14.44 16 36 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 37 H 0.11 4.63 5.88 -2.91 -0.02 4.62 16 Total: -1.00 -67.13 296.33 0.40 -66.73 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: -0.39 Total: 33.22 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: 3.40 Total: -34.50 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -4.63 Total: -112.34 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -67.13 0.40 -66.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261054263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.050 kcal (2) G-P(sol) polarization free energy of solvation -67.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds