Wall clock time and date at job start Mon Mar 30 2020 04:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47902 * 111.00154 * 2 1 4 4 C 1.54597 * 102.63763 * 265.43650 * 3 2 1 5 5 C 1.51581 * 102.82969 * 334.43965 * 4 3 2 6 6 C 1.39007 * 107.94309 * 16.02144 * 5 4 3 7 7 C 1.39363 * 119.08638 * 180.50788 * 6 5 4 8 8 C 1.37946 * 120.19987 * 359.76649 * 7 6 5 9 9 C 1.38264 * 120.26491 * 359.74047 * 8 7 6 10 10 C 1.37868 * 131.57248 * 196.25572 * 5 4 3 11 11 C 1.50700 * 119.96164 * 359.57445 * 10 5 4 12 12 H 1.09009 * 109.47161 * 325.00407 * 11 10 5 13 13 N 1.46899 * 109.47601 * 205.00748 * 11 10 5 14 14 C 1.52996 * 109.47144 * 85.00130 * 11 10 5 15 15 C 1.50702 * 109.47159 * 185.00130 * 14 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 11 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 H 1.09001 * 109.46947 * 59.87096 * 1 2 3 24 24 H 1.09000 * 109.46765 * 179.87338 * 1 2 3 25 25 H 1.08996 * 109.46809 * 299.87331 * 1 2 3 26 26 H 1.08999 * 110.77686 * 147.14983 * 3 2 1 27 27 H 1.09006 * 110.77854 * 23.72233 * 3 2 1 28 28 H 1.09001 * 110.74325 * 216.10641 * 4 3 2 29 29 H 1.09001 * 110.89803 * 92.83848 * 4 3 2 30 30 H 1.08005 * 119.89762 * 179.75618 * 7 6 5 31 31 H 1.08006 * 119.86865 * 180.02562 * 8 7 6 32 32 H 1.07993 * 120.06116 * 180.40015 * 9 8 7 33 33 H 1.00901 * 110.99243 * 299.99615 * 13 11 10 34 34 H 1.00899 * 111.00294 * 63.95163 * 13 11 10 35 35 H 1.09004 * 109.47066 * 65.00333 * 14 11 10 36 36 H 1.08994 * 109.47405 * 305.00163 * 14 11 10 37 37 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 2.2323 1.6535 -1.5037 5 6 2.4320 0.2622 -2.0712 6 6 1.9708 -0.6534 -1.1324 7 6 2.0553 -2.0153 -1.4159 8 6 2.5858 -2.4427 -2.6155 9 6 3.0323 -1.5236 -3.5469 10 6 2.9599 -0.1702 -3.2691 11 6 3.4529 0.8328 -4.2800 12 1 2.8219 1.7211 -4.2482 13 7 3.3982 0.2414 -5.6236 14 6 4.8961 1.2206 -3.9518 15 6 5.3479 2.3126 -4.8869 16 1 4.6731 2.6925 -5.6397 17 6 6.6208 2.8312 -4.7772 18 7 7.0133 3.7880 -5.5897 19 14 7.7878 2.1746 -3.4747 20 1 8.5661 1.0404 -4.0339 21 1 8.7177 3.2535 -3.0542 22 1 7.0073 1.7083 -2.3005 23 1 -0.3633 0.5158 -0.8888 24 1 -0.3633 -1.0277 -0.0023 25 1 -0.3633 0.5119 0.8911 26 1 2.9369 1.4349 0.5528 27 1 1.2666 2.0762 0.4100 28 1 3.1242 2.2624 -1.6518 29 1 1.3613 2.1317 -1.9518 30 1 1.7046 -2.7382 -0.6942 31 1 2.6483 -3.4994 -2.8298 32 1 3.4410 -1.8617 -4.4876 33 1 3.9756 -0.5842 -5.6789 34 1 2.4469 0.0359 -5.8898 35 1 5.5420 0.3505 -4.0702 36 1 4.9516 1.5769 -2.9233 37 1 7.9089 4.1525 -5.5127 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261059729.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:33 Heat of formation + Delta-G solvation = 17.263426 kcal Electronic energy + Delta-G solvation = -17939.807963 eV Core-core repulsion = 15294.876693 eV Total energy + Delta-G solvation = -2644.931270 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.83738 -38.67730 -36.47801 -34.53254 -33.01973 -30.95163 -30.32139 -29.86487 -26.81341 -26.08420 -23.86570 -22.56179 -22.17728 -20.53754 -18.90875 -17.54448 -17.29440 -16.71222 -16.52252 -16.21854 -16.09136 -15.14822 -14.96378 -14.70157 -14.46656 -14.07435 -13.98425 -13.64199 -13.44849 -13.10019 -12.98286 -12.88357 -12.47560 -12.29114 -12.15710 -11.94831 -11.84048 -11.62148 -11.31273 -10.73300 -10.44897 -9.57491 -9.40447 -8.89435 -8.22596 -6.22572 0.35095 0.41526 1.33062 1.34392 1.45622 2.36965 2.66149 2.76505 3.10782 3.61004 3.79654 3.85680 3.96953 4.05265 4.13782 4.26475 4.41038 4.48522 4.51816 4.59697 4.63585 4.71588 4.72225 4.89295 4.92693 5.01507 5.13920 5.16504 5.36252 5.41907 5.47973 5.62366 5.70696 5.75330 5.94008 6.29551 6.33858 6.48573 6.77151 6.85970 7.38554 8.94591 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025018 B = 0.006947 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.932449 B = 4029.570400 C = 4432.993279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.503 5.503 3 C 0.053 3.947 4 C -0.115 4.115 5 C -0.152 4.152 6 C 0.077 3.923 7 C -0.124 4.124 8 C -0.096 4.096 9 C -0.146 4.146 10 C -0.092 4.092 11 C 0.155 3.845 12 H 0.062 0.938 13 N -0.833 5.833 14 C 0.011 3.989 15 C -0.496 4.496 16 H 0.038 0.962 17 C 0.003 3.997 18 N -0.953 5.953 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.255 1.255 23 H 0.027 0.973 24 H 0.077 0.923 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.111 0.889 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.142 0.858 31 H 0.156 0.844 32 H 0.133 0.867 33 H 0.342 0.658 34 H 0.342 0.658 35 H 0.010 0.990 36 H 0.014 0.986 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.529 -12.149 12.080 21.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.220 5.220 3 C -0.073 4.073 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.019 4.019 7 C -0.144 4.144 8 C -0.115 4.115 9 C -0.165 4.165 10 C -0.094 4.094 11 C 0.043 3.957 12 H 0.080 0.920 13 N -0.363 5.363 14 C -0.026 4.026 15 C -0.534 4.534 16 H 0.057 0.943 17 C -0.193 4.193 18 N -0.595 5.595 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.179 1.179 23 H 0.046 0.954 24 H 0.096 0.904 25 H 0.113 0.887 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.160 0.840 31 H 0.174 0.826 32 H 0.150 0.850 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.029 0.971 36 H 0.032 0.968 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.967 -11.582 12.294 21.294 hybrid contribution 0.325 -0.100 -0.165 0.378 sum -12.642 -11.682 12.129 21.057 Atomic orbital electron populations 1.22548 0.84152 1.03297 1.01808 1.60306 1.09740 1.15081 1.36903 1.23221 1.01931 0.87971 0.94194 1.21706 1.02656 0.93999 0.96960 1.21023 1.03305 0.96600 0.94612 1.19822 0.98614 0.94067 0.89389 1.20703 1.02691 0.92735 0.98269 1.21191 0.97101 1.00605 0.92571 1.21120 1.02395 0.91769 1.01173 1.20502 0.97525 0.95910 0.95498 1.20069 0.96477 0.93793 0.85388 0.91990 1.58664 1.15079 1.36218 1.26353 1.19421 0.92719 0.95167 0.95325 1.21249 0.98421 1.17889 1.15849 0.94340 1.25882 1.00004 0.95239 0.98138 1.70062 1.19661 1.29237 1.40529 0.85803 0.78997 0.78255 0.80411 1.19496 1.20940 1.17918 0.95436 0.90405 0.88728 0.89702 0.87101 0.90955 0.89810 0.84026 0.82600 0.84966 0.84346 0.84529 0.97143 0.96807 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.28 127.69 1.19 1.68 16 2 N -0.50 -12.16 5.33 -713.42 -3.80 -15.96 16 3 C 0.05 1.25 7.00 86.65 0.61 1.86 16 4 C -0.12 -3.37 6.53 30.67 0.20 -3.17 16 5 C -0.15 -4.91 6.05 -19.49 -0.12 -5.02 16 6 C 0.08 2.16 5.59 38.28 0.21 2.37 16 7 C -0.12 -3.02 10.07 22.47 0.23 -2.80 16 8 C -0.10 -2.26 10.02 22.21 0.22 -2.04 16 9 C -0.15 -4.13 9.28 22.30 0.21 -3.93 16 10 C -0.09 -3.10 5.04 -19.93 -0.10 -3.20 16 11 C 0.15 6.22 2.77 44.17 0.12 6.34 16 12 H 0.06 2.68 7.90 -2.38 -0.02 2.66 16 13 N -0.83 -30.66 8.54 -171.80 -1.47 -32.13 16 14 C 0.01 0.55 3.67 29.85 0.11 0.66 16 15 C -0.50 -29.23 9.39 25.60 0.24 -28.99 16 16 H 0.04 2.53 7.99 -2.91 -0.02 2.51 16 17 C 0.00 0.18 5.47 84.66 0.46 0.65 16 18 N -0.95 -61.30 13.96 21.45 0.30 -61.00 16 19 Si 0.94 46.03 27.47 68.60 1.88 47.91 16 20 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 21 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 22 H -0.26 -11.85 6.54 99.48 0.65 -11.20 16 23 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.09 1.28 8.11 -2.39 -0.02 1.26 16 26 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.11 1.92 7.76 -2.38 -0.02 1.90 16 28 H 0.07 2.42 7.88 -2.39 -0.02 2.40 16 29 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 31 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.13 3.36 6.29 -2.91 -0.02 3.34 16 33 H 0.34 11.50 7.21 -89.69 -0.65 10.85 16 34 H 0.34 10.50 9.06 -89.69 -0.81 9.69 16 35 H 0.01 0.50 7.58 -2.38 -0.02 0.48 16 36 H 0.01 0.68 6.92 -2.39 -0.02 0.66 16 37 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -70.81 299.91 0.05 -70.76 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: -0.44 Total: 26.02 kcal Atomic # 6 Polarization: -39.18 SS G_CDS: 3.58 Total: -35.60 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -4.97 Total: -109.09 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.88 Total: 47.91 kcal Total: -70.81 0.05 -70.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261059729.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.020 kcal (2) G-P(sol) polarization free energy of solvation -70.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds