Wall clock time and date at job start Mon Mar 30 2020 04:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47912 * 111.00016 * 2 1 4 4 C 1.54601 * 102.63256 * 265.43206 * 3 2 1 5 5 C 1.51573 * 102.83001 * 334.43994 * 4 3 2 6 6 C 1.39003 * 107.94884 * 16.02557 * 5 4 3 7 7 C 1.39361 * 119.09069 * 180.50482 * 6 5 4 8 8 C 1.37946 * 120.19846 * 359.77069 * 7 6 5 9 9 C 1.38266 * 120.26574 * 359.73440 * 8 7 6 10 10 C 1.37877 * 131.56896 * 196.25299 * 5 4 3 11 11 C 1.50695 * 119.95900 * 359.57857 * 10 5 4 12 12 H 1.09000 * 109.47521 * 40.00198 * 11 10 5 13 13 N 1.46908 * 109.47079 * 160.00234 * 11 10 5 14 14 C 1.52996 * 109.47310 * 279.99968 * 11 10 5 15 15 C 1.50702 * 109.47159 * 174.99934 * 14 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 H 1.09010 * 109.47078 * 59.87561 * 1 2 3 24 24 H 1.09001 * 109.47228 * 179.86998 * 1 2 3 25 25 H 1.08996 * 109.47792 * 299.87835 * 1 2 3 26 26 H 1.09003 * 110.77540 * 147.14333 * 3 2 1 27 27 H 1.09000 * 110.93641 * 23.79106 * 3 2 1 28 28 H 1.08993 * 110.73996 * 216.10399 * 4 3 2 29 29 H 1.08995 * 110.73864 * 92.77420 * 4 3 2 30 30 H 1.08002 * 119.90094 * 179.75116 * 7 6 5 31 31 H 1.08001 * 119.86805 * 180.02562 * 8 7 6 32 32 H 1.07998 * 120.06028 * 180.40677 * 9 8 7 33 33 H 1.00899 * 110.99551 * 296.04539 * 13 11 10 34 34 H 1.00902 * 111.00072 * 59.99841 * 13 11 10 35 35 H 1.09004 * 109.47066 * 55.00137 * 14 11 10 36 36 H 1.08994 * 109.47405 * 294.99967 * 14 11 10 37 37 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 2.2324 1.6535 -1.5038 5 6 2.4320 0.2621 -2.0711 6 6 1.9708 -0.6534 -1.1323 7 6 2.0553 -2.0153 -1.4158 8 6 2.5858 -2.4428 -2.6152 9 6 3.0324 -1.5237 -3.5467 10 6 2.9600 -0.1703 -3.2691 11 6 3.4530 0.8327 -4.2799 12 1 3.9738 1.6407 -3.7660 13 7 4.3743 0.1732 -5.2150 14 6 2.2632 1.4039 -5.0538 15 6 2.7416 2.4941 -5.9778 16 1 3.7895 2.7534 -6.0102 17 6 1.8423 3.1563 -6.7865 18 7 0.5663 2.8402 -6.7474 19 14 2.4364 4.5023 -7.9373 20 1 3.4269 3.9383 -8.8892 21 1 1.2822 5.0534 -8.6920 22 1 3.0722 5.5858 -7.1455 23 1 -0.3634 0.5158 -0.8889 24 1 -0.3634 -1.0277 -0.0023 25 1 -0.3634 0.5119 0.8910 26 1 2.9368 1.4350 0.5529 27 1 1.2690 2.0783 0.4107 28 1 3.1242 2.2623 -1.6519 29 1 1.3596 2.1305 -1.9495 30 1 1.7045 -2.7382 -0.6941 31 1 2.6484 -3.4995 -2.8296 32 1 3.4412 -1.8619 -4.4874 33 1 5.1998 -0.1561 -4.7374 34 1 3.9149 -0.5803 -5.7043 35 1 1.5370 1.8147 -4.3524 36 1 1.7957 0.6115 -5.6383 37 1 -0.0664 3.3064 -7.3161 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261059730.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:35 Heat of formation + Delta-G solvation = 35.611909 kcal Electronic energy + Delta-G solvation = -17902.187752 eV Core-core repulsion = 15258.052132 eV Total energy + Delta-G solvation = -2644.135620 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.62374 -37.30913 -34.94537 -32.47418 -31.77635 -29.19623 -28.78289 -28.12420 -25.69577 -24.35961 -22.61877 -21.14832 -20.94023 -19.07282 -16.58740 -16.08815 -15.95540 -15.32162 -15.07583 -15.00716 -14.34368 -13.83014 -13.52450 -13.25645 -12.90901 -12.58141 -12.32671 -12.19773 -11.95007 -11.86478 -11.27024 -11.14355 -10.98215 -10.91739 -10.63876 -10.53777 -10.21851 -9.66677 -9.18552 -9.08871 -8.29978 -8.14575 -7.98894 -7.68283 -5.91621 -3.90531 1.58138 1.70266 3.39452 3.43032 3.46961 3.76431 4.01975 4.54026 4.83787 4.98644 5.10294 5.21092 5.28425 5.30289 5.35988 5.48010 5.50811 5.64278 5.74561 5.76830 5.81698 5.84341 6.08230 6.16704 6.29763 6.38336 6.56645 6.68201 6.70595 6.89613 6.97782 7.08867 7.47864 7.54438 7.71339 7.99497 8.09212 8.18938 8.52802 9.15388 9.71346 11.20004 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025915 B = 0.006459 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.181413 B = 4334.207540 C = 4884.118594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.497 5.497 3 C 0.048 3.952 4 C -0.109 4.109 5 C -0.124 4.124 6 C 0.082 3.918 7 C -0.126 4.126 8 C -0.105 4.105 9 C -0.140 4.140 10 C -0.067 4.067 11 C 0.131 3.869 12 H 0.077 0.923 13 N -0.823 5.823 14 C 0.042 3.958 15 C -0.495 4.495 16 H 0.061 0.939 17 C 0.051 3.949 18 N -0.903 5.903 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.279 1.279 23 H 0.037 0.963 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.322 0.678 34 H 0.335 0.665 35 H 0.018 0.982 36 H 0.015 0.985 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.100 -7.388 12.401 14.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.215 5.215 3 C -0.079 4.079 4 C -0.147 4.147 5 C -0.127 4.127 6 C -0.014 4.014 7 C -0.146 4.146 8 C -0.123 4.123 9 C -0.158 4.158 10 C -0.070 4.070 11 C 0.020 3.980 12 H 0.095 0.905 13 N -0.351 5.351 14 C 0.004 3.996 15 C -0.533 4.533 16 H 0.080 0.920 17 C -0.149 4.149 18 N -0.543 5.543 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.204 1.204 23 H 0.055 0.945 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.149 0.851 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.081 -6.856 12.447 14.362 hybrid contribution -0.277 0.191 -0.772 0.842 sum 1.804 -6.666 11.675 13.565 Atomic orbital electron populations 1.22462 0.85838 1.02487 1.01207 1.60267 1.08345 1.14916 1.37971 1.23170 1.00916 0.87749 0.96022 1.21656 1.03603 0.94624 0.94806 1.20714 1.02549 0.95351 0.94134 1.19530 0.98790 0.93566 0.89465 1.20294 1.03688 0.92794 0.97819 1.20798 0.98899 0.99156 0.93474 1.20906 1.02892 0.92459 0.99589 1.20732 0.96155 0.95486 0.94580 1.20777 0.95441 0.92471 0.89348 0.90454 1.58821 1.09026 1.35850 1.31367 1.19065 0.90483 0.95685 0.94322 1.21135 0.94192 1.16992 1.20987 0.92036 1.25021 0.94917 0.97517 0.97428 1.69967 1.01723 1.42377 1.40262 0.86648 0.77962 0.82185 0.81089 1.20286 1.21613 1.20449 0.94473 0.91266 0.91006 0.89623 0.89932 0.89493 0.89517 0.86577 0.86123 0.86157 0.86675 0.85143 0.96336 0.96712 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.29 60.06 0.56 0.88 16 2 N -0.50 -7.06 5.33 -176.84 -0.94 -8.01 16 3 C 0.05 0.62 7.00 -2.43 -0.02 0.61 16 4 C -0.11 -1.71 6.63 -26.61 -0.18 -1.89 16 5 C -0.12 -2.18 6.05 -104.04 -0.63 -2.81 16 6 C 0.08 1.32 5.59 -83.41 -0.47 0.85 16 7 C -0.13 -1.86 10.07 -39.27 -0.40 -2.25 16 8 C -0.10 -1.50 10.02 -39.68 -0.40 -1.90 16 9 C -0.14 -2.25 9.26 -39.53 -0.37 -2.62 16 10 C -0.07 -1.22 5.07 -104.72 -0.53 -1.75 16 11 C 0.13 2.69 2.74 -68.86 -0.19 2.50 16 12 H 0.08 1.63 7.91 -51.93 -0.41 1.22 16 13 N -0.82 -15.33 8.43 -5.65 -0.05 -15.38 16 14 C 0.04 1.07 4.60 -27.88 -0.13 0.94 16 15 C -0.49 -13.97 8.84 -34.44 -0.30 -14.27 16 16 H 0.06 1.73 7.74 -52.49 -0.41 1.33 16 17 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 18 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 19 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H 0.04 0.51 8.14 -51.92 -0.42 0.08 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 26 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.08 0.90 7.77 -51.93 -0.40 0.49 16 28 H 0.09 1.32 8.00 -51.93 -0.42 0.91 16 29 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 31 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.12 1.76 6.25 -52.49 -0.33 1.43 16 33 H 0.32 5.07 9.06 -39.29 -0.36 4.71 16 34 H 0.33 5.96 7.28 -39.29 -0.29 5.68 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 303.90 15.07 4.58 4.58 Total: -1.00 -31.40 303.90 -9.38 -40.78 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.54 Total: 7.85 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -3.14 Total: -20.33 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.25 Total: -49.97 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.40 -9.38 -40.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261059730.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.390 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds