Wall clock time and date at job start Mon Mar 30 2020 04:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47912 * 111.00016 * 2 1 4 4 C 1.54601 * 102.63256 * 265.43206 * 3 2 1 5 5 C 1.51573 * 102.83001 * 334.43994 * 4 3 2 6 6 C 1.39003 * 107.94884 * 16.02557 * 5 4 3 7 7 C 1.39361 * 119.09069 * 180.50482 * 6 5 4 8 8 C 1.37946 * 120.19846 * 359.77069 * 7 6 5 9 9 C 1.38266 * 120.26574 * 359.73440 * 8 7 6 10 10 C 1.37877 * 131.56896 * 196.25299 * 5 4 3 11 11 C 1.50695 * 119.95900 * 359.57857 * 10 5 4 12 12 H 1.09000 * 109.47521 * 40.00198 * 11 10 5 13 13 N 1.46908 * 109.47079 * 160.00234 * 11 10 5 14 14 C 1.52996 * 109.47310 * 279.99968 * 11 10 5 15 15 C 1.50702 * 109.47159 * 174.99934 * 14 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 H 1.09010 * 109.47078 * 59.87561 * 1 2 3 24 24 H 1.09001 * 109.47228 * 179.86998 * 1 2 3 25 25 H 1.08996 * 109.47792 * 299.87835 * 1 2 3 26 26 H 1.09003 * 110.77540 * 147.14333 * 3 2 1 27 27 H 1.09000 * 110.93641 * 23.79106 * 3 2 1 28 28 H 1.08993 * 110.73996 * 216.10399 * 4 3 2 29 29 H 1.08995 * 110.73864 * 92.77420 * 4 3 2 30 30 H 1.08002 * 119.90094 * 179.75116 * 7 6 5 31 31 H 1.08001 * 119.86805 * 180.02562 * 8 7 6 32 32 H 1.07998 * 120.06028 * 180.40677 * 9 8 7 33 33 H 1.00899 * 110.99551 * 296.04539 * 13 11 10 34 34 H 1.00902 * 111.00072 * 59.99841 * 13 11 10 35 35 H 1.09004 * 109.47066 * 55.00137 * 14 11 10 36 36 H 1.08994 * 109.47405 * 294.99967 * 14 11 10 37 37 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 2.2324 1.6535 -1.5038 5 6 2.4320 0.2621 -2.0711 6 6 1.9708 -0.6534 -1.1323 7 6 2.0553 -2.0153 -1.4158 8 6 2.5858 -2.4428 -2.6152 9 6 3.0324 -1.5237 -3.5467 10 6 2.9600 -0.1703 -3.2691 11 6 3.4530 0.8327 -4.2799 12 1 3.9738 1.6407 -3.7660 13 7 4.3743 0.1732 -5.2150 14 6 2.2632 1.4039 -5.0538 15 6 2.7416 2.4941 -5.9778 16 1 3.7895 2.7534 -6.0102 17 6 1.8423 3.1563 -6.7865 18 7 0.5663 2.8402 -6.7474 19 14 2.4364 4.5023 -7.9373 20 1 3.4269 3.9383 -8.8892 21 1 1.2822 5.0534 -8.6920 22 1 3.0722 5.5858 -7.1455 23 1 -0.3634 0.5158 -0.8889 24 1 -0.3634 -1.0277 -0.0023 25 1 -0.3634 0.5119 0.8910 26 1 2.9368 1.4350 0.5529 27 1 1.2690 2.0783 0.4107 28 1 3.1242 2.2623 -1.6519 29 1 1.3596 2.1305 -1.9495 30 1 1.7045 -2.7382 -0.6941 31 1 2.6484 -3.4995 -2.8296 32 1 3.4412 -1.8619 -4.4874 33 1 5.1998 -0.1561 -4.7374 34 1 3.9149 -0.5803 -5.7043 35 1 1.5370 1.8147 -4.3524 36 1 1.7957 0.6115 -5.6383 37 1 -0.0664 3.3064 -7.3161 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261059730.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:35 Heat of formation + Delta-G solvation = 14.630170 kcal Electronic energy + Delta-G solvation = -17903.097588 eV Core-core repulsion = 15258.052132 eV Total energy + Delta-G solvation = -2645.045457 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.81914 -38.63733 -36.44822 -34.54589 -33.01224 -30.55519 -30.20927 -29.75459 -26.81670 -26.16443 -24.03307 -22.66942 -22.17203 -20.50404 -18.52939 -17.43769 -17.29822 -16.71519 -16.52473 -16.26560 -16.20458 -15.17022 -14.81571 -14.54605 -14.32679 -14.09984 -13.88721 -13.48277 -13.29104 -13.11844 -12.90934 -12.82996 -12.53784 -12.43321 -12.15079 -12.06685 -11.88983 -11.54027 -11.23622 -10.53751 -10.38376 -9.54582 -9.44970 -8.88733 -8.14249 -6.21267 0.35854 0.44009 1.40450 1.43703 1.51411 2.44415 2.64327 2.81656 3.18418 3.63669 3.81887 3.88705 3.98821 4.05415 4.16823 4.25498 4.46492 4.47884 4.53711 4.59512 4.65024 4.72263 4.81166 4.88604 4.95580 5.02390 5.18291 5.40557 5.41659 5.48929 5.52747 5.68897 5.75988 5.84908 5.92198 6.26357 6.30878 6.47936 6.79222 6.92394 7.45463 8.97275 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025915 B = 0.006459 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.181413 B = 4334.207540 C = 4884.118594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.498 5.498 3 C 0.055 3.945 4 C -0.111 4.111 5 C -0.151 4.151 6 C 0.074 3.926 7 C -0.125 4.125 8 C -0.098 4.098 9 C -0.148 4.148 10 C -0.092 4.092 11 C 0.148 3.852 12 H 0.065 0.935 13 N -0.829 5.829 14 C 0.055 3.945 15 C -0.509 4.509 16 H 0.060 0.940 17 C -0.005 4.005 18 N -0.939 5.939 19 Si 0.962 3.038 20 H -0.270 1.270 21 H -0.286 1.286 22 H -0.269 1.269 23 H 0.015 0.985 24 H 0.078 0.922 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.143 0.857 31 H 0.157 0.843 32 H 0.132 0.868 33 H 0.341 0.659 34 H 0.339 0.661 35 H -0.011 1.011 36 H -0.016 1.016 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.768 -8.271 13.371 15.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.215 5.215 3 C -0.071 4.071 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.022 4.022 7 C -0.145 4.145 8 C -0.116 4.116 9 C -0.166 4.166 10 C -0.095 4.095 11 C 0.036 3.964 12 H 0.083 0.917 13 N -0.359 5.359 14 C 0.017 3.983 15 C -0.547 4.547 16 H 0.078 0.922 17 C -0.201 4.201 18 N -0.580 5.580 19 Si 0.787 3.213 20 H -0.195 1.195 21 H -0.211 1.211 22 H -0.194 1.194 23 H 0.034 0.966 24 H 0.096 0.904 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.122 0.878 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.161 0.839 31 H 0.175 0.825 32 H 0.150 0.850 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.007 0.993 36 H 0.002 0.998 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.770 -7.747 13.432 15.752 hybrid contribution -0.506 0.407 -1.034 1.221 sum 2.264 -7.340 12.398 14.585 Atomic orbital electron populations 1.22551 0.84775 1.03211 1.01468 1.60370 1.09212 1.15168 1.36759 1.23251 1.02257 0.87764 0.93870 1.21664 1.02315 0.94033 0.96944 1.20990 1.03260 0.96523 0.94637 1.19832 0.98588 0.94125 0.89632 1.20698 1.02640 0.92723 0.98399 1.21193 0.97221 1.00604 0.92596 1.21125 1.03034 0.91853 1.00623 1.20578 0.98283 0.95986 0.94611 1.20248 0.93561 0.93135 0.89425 0.91654 1.58691 1.09470 1.36288 1.31449 1.18813 0.91799 0.94238 0.93422 1.21470 0.94126 1.17680 1.21416 0.92204 1.25915 0.94988 1.00015 0.99174 1.70106 1.02964 1.43718 1.41251 0.85552 0.77596 0.79237 0.78917 1.19525 1.21136 1.19366 0.96587 0.90371 0.88363 0.88299 0.87758 0.89861 0.91996 0.83926 0.82544 0.85046 0.84535 0.84622 0.99272 0.99754 0.93151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.29 127.69 1.19 1.78 16 2 N -0.50 -13.31 5.33 -713.40 -3.80 -17.11 16 3 C 0.06 1.37 7.00 86.65 0.61 1.97 16 4 C -0.11 -3.63 6.63 30.67 0.20 -3.42 16 5 C -0.15 -5.36 6.05 -19.49 -0.12 -5.48 16 6 C 0.07 2.29 5.59 38.28 0.21 2.50 16 7 C -0.12 -3.37 10.07 22.47 0.23 -3.14 16 8 C -0.10 -2.56 10.02 22.21 0.22 -2.33 16 9 C -0.15 -4.62 9.26 22.30 0.21 -4.41 16 10 C -0.09 -3.40 5.07 -19.92 -0.10 -3.50 16 11 C 0.15 6.27 2.74 44.16 0.12 6.39 16 12 H 0.07 2.87 7.91 -2.39 -0.02 2.85 16 13 N -0.83 -30.99 8.43 -171.80 -1.45 -32.43 16 14 C 0.05 2.94 4.60 29.85 0.14 3.07 16 15 C -0.51 -29.50 8.84 25.60 0.23 -29.27 16 16 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 17 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 18 N -0.94 -58.35 13.29 21.45 0.28 -58.06 16 19 Si 0.96 45.78 29.54 68.60 2.03 47.80 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 H 0.02 0.43 8.14 -2.38 -0.02 0.41 16 24 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.10 1.73 8.11 -2.39 -0.02 1.71 16 26 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.10 2.10 7.77 -2.39 -0.02 2.08 16 28 H 0.08 2.67 8.00 -2.39 -0.02 2.65 16 29 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 31 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 32 H 0.13 3.70 6.25 -2.91 -0.02 3.68 16 33 H 0.34 10.51 9.06 -89.69 -0.81 9.70 16 34 H 0.34 12.11 7.28 -89.69 -0.65 11.46 16 35 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 36 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 37 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 Total: -1.00 -68.84 303.90 0.26 -68.58 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: -0.40 Total: 26.87 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 3.59 Total: -35.65 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -4.96 Total: -107.61 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -68.84 0.26 -68.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261059730.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.214 kcal (2) G-P(sol) polarization free energy of solvation -68.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds