Wall clock time and date at job start Mon Mar 30 2020 04:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.47909 * 110.99818 * 2 1 4 4 C 1.54602 * 102.62151 * 149.11090 * 3 2 1 5 5 C 1.51573 * 102.83657 * 334.46427 * 4 3 2 6 6 C 1.37918 * 131.56067 * 196.07285 * 5 4 3 7 7 C 1.38302 * 120.08238 * 179.64905 * 6 5 4 8 8 C 1.38309 * 119.87700 * 359.72526 * 7 6 5 9 9 C 1.37905 * 120.26831 * 0.65003 * 8 7 6 10 10 C 1.50702 * 119.90278 * 179.72666 * 9 8 7 11 11 H 1.08998 * 109.46861 * 132.25108 * 10 9 8 12 12 N 1.46899 * 109.47114 * 252.25129 * 10 9 8 13 13 C 1.52999 * 109.47202 * 12.25049 * 10 9 8 14 14 C 1.50700 * 109.47153 * 177.05439 * 13 10 9 15 15 H 1.08000 * 119.99890 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00046 * 180.02562 * 14 13 10 17 17 N 1.31511 * 120.00200 * 179.97438 * 16 14 13 18 18 Si 1.86809 * 119.99939 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47119 * 89.99767 * 18 16 14 20 20 H 1.48496 * 109.46814 * 210.00102 * 18 16 14 21 21 H 1.48502 * 109.47046 * 329.99746 * 18 16 14 22 22 C 1.38958 * 107.95340 * 15.93809 * 5 4 3 23 23 H 1.08994 * 109.47007 * 289.18825 * 1 2 3 24 24 H 1.09000 * 109.46980 * 49.19261 * 1 2 3 25 25 H 1.09004 * 109.46680 * 169.18966 * 1 2 3 26 26 H 1.09000 * 110.77985 * 30.82727 * 3 2 1 27 27 H 1.09003 * 110.93806 * 267.46887 * 3 2 1 28 28 H 1.08999 * 110.73993 * 216.12522 * 4 3 2 29 29 H 1.08995 * 110.89442 * 92.87670 * 4 3 2 30 30 H 1.08005 * 119.96024 * 359.61927 * 6 5 4 31 31 H 1.07991 * 120.06179 * 180.02562 * 7 6 5 32 32 H 1.08003 * 119.86770 * 180.40077 * 8 7 6 33 33 H 1.00899 * 111.00070 * 60.00080 * 12 10 9 34 34 H 1.00896 * 111.00373 * 183.95242 * 12 10 9 35 35 H 1.09004 * 109.46848 * 57.05378 * 13 10 9 36 36 H 1.08998 * 109.46961 * 297.06170 * 13 10 9 37 37 H 0.97001 * 119.99749 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9991 1.3809 0.0000 4 6 3.3288 1.2323 0.7745 5 6 3.0803 0.0127 1.6395 6 6 3.7401 -0.4715 2.7496 7 6 3.2975 -1.6253 3.3706 8 6 2.1883 -2.2899 2.8798 9 6 1.5297 -1.8142 1.7654 10 6 0.3257 -2.5483 1.2339 11 1 -0.4800 -1.8381 1.0479 12 7 0.6799 -3.2266 -0.0200 13 6 -0.1348 -3.5841 2.2615 14 6 -1.3812 -4.2680 1.7617 15 1 -1.8026 -3.9917 0.8064 16 6 -1.9837 -5.2462 2.5239 17 7 -3.0717 -5.8426 2.0880 18 14 -1.2553 -5.7236 4.1766 19 1 -1.8486 -4.8766 5.2422 20 1 -1.5538 -7.1513 4.4552 21 1 0.2157 -5.5223 4.1459 22 6 1.9709 -0.6531 1.1326 23 1 -0.3633 0.3377 0.9705 24 1 -0.3633 0.6716 -0.7779 25 1 -0.3633 -1.0095 -0.1928 26 1 1.3207 2.0555 0.5222 27 1 2.1807 1.7284 -1.0171 28 1 3.5166 2.1112 1.3912 29 1 4.1596 1.0579 0.0908 30 1 4.6037 0.0507 3.1343 31 1 3.8141 -2.0039 4.2401 32 1 1.8390 -3.1873 3.3687 33 1 1.4252 -3.8908 0.1262 34 1 -0.1267 -3.6729 -0.4302 35 1 -0.3477 -3.0871 3.2080 36 1 0.6517 -4.3243 2.4087 37 1 -3.4953 -6.5312 2.6241 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261063914.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:39 Heat of formation + Delta-G solvation = 42.992415 kcal Electronic energy + Delta-G solvation = -18102.734486 eV Core-core repulsion = 15458.918909 eV Total energy + Delta-G solvation = -2643.815578 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.60300 -36.88540 -35.59628 -32.65031 -31.65212 -29.45042 -29.11097 -28.14798 -25.82974 -23.86936 -22.60189 -21.69188 -20.47880 -19.06084 -17.13896 -16.14664 -15.80405 -15.55119 -15.12420 -14.57114 -14.27832 -13.72377 -13.41877 -13.20501 -12.86378 -12.69309 -12.45587 -12.31560 -12.12429 -11.74985 -11.68222 -11.51053 -11.12875 -10.88530 -10.71753 -10.28497 -9.90988 -9.73866 -9.57585 -9.18946 -8.62721 -8.32915 -7.75170 -7.36845 -6.12851 -4.12010 1.69601 1.73031 3.24825 3.32931 3.34818 3.86764 4.15771 4.37689 4.70747 4.73527 5.10327 5.19508 5.22558 5.35058 5.41637 5.56555 5.61411 5.66801 5.69626 5.75614 5.84828 5.91917 6.05165 6.11682 6.30238 6.34464 6.56111 6.67354 6.74846 6.89959 7.00635 7.09535 7.21579 7.29624 7.55465 7.69410 8.02623 8.30173 8.43665 8.89824 9.49753 10.99902 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030075 B = 0.006968 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.786080 B = 4017.259111 C = 4706.362491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.464 5.464 3 C 0.042 3.958 4 C -0.079 4.079 5 C -0.158 4.158 6 C -0.090 4.090 7 C -0.151 4.151 8 C -0.092 4.092 9 C -0.081 4.081 10 C 0.128 3.872 11 H 0.089 0.911 12 N -0.829 5.829 13 C -0.044 4.044 14 C -0.523 4.523 15 H 0.074 0.926 16 C 0.070 3.930 17 N -0.899 5.899 18 Si 0.879 3.121 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.266 1.266 22 C 0.118 3.882 23 H 0.033 0.967 24 H 0.065 0.935 25 H 0.106 0.894 26 H 0.055 0.945 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.130 0.870 33 H 0.330 0.670 34 H 0.347 0.653 35 H 0.015 0.985 36 H 0.018 0.982 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.683 12.744 -0.618 17.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 N -0.177 5.177 3 C -0.084 4.084 4 C -0.116 4.116 5 C -0.161 4.161 6 C -0.109 4.109 7 C -0.170 4.170 8 C -0.111 4.111 9 C -0.085 4.085 10 C 0.017 3.983 11 H 0.107 0.893 12 N -0.358 5.358 13 C -0.083 4.083 14 C -0.561 4.561 15 H 0.092 0.908 16 C -0.132 4.132 17 N -0.538 5.538 18 Si 0.706 3.294 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.191 1.191 22 C 0.019 3.981 23 H 0.051 0.949 24 H 0.084 0.916 25 H 0.124 0.876 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.131 0.869 31 H 0.136 0.864 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.162 0.838 35 H 0.033 0.967 36 H 0.036 0.964 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.810 13.129 -1.406 17.716 hybrid contribution -0.281 -0.966 2.102 2.330 sum 11.529 12.163 0.696 16.773 Atomic orbital electron populations 1.22908 0.85723 1.05357 1.00204 1.60350 1.09332 1.12879 1.35111 1.23265 0.95186 0.88890 1.01047 1.21207 0.97769 0.95684 0.96982 1.20428 0.99089 0.98846 0.97731 1.20229 0.99277 0.96438 0.94958 1.20927 0.98297 0.96594 1.01211 1.21107 0.94576 0.99769 0.95610 1.19577 0.98786 0.94647 0.95466 1.20461 0.92342 0.95543 0.89908 0.89345 1.59160 1.13800 1.36937 1.25863 1.20411 0.97219 0.94952 0.95742 1.21046 1.08748 1.19773 1.06568 0.90843 1.25004 0.94553 0.95775 0.97861 1.69908 1.19488 1.26011 1.38368 0.86798 0.80193 0.77694 0.84689 1.20296 1.21394 1.19120 1.19419 0.95341 0.94793 0.88552 0.94855 0.91605 0.87555 0.92696 0.89160 0.90740 0.89966 0.86861 0.86378 0.85220 0.85957 0.83848 0.96718 0.96395 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.06 8.07 60.07 0.48 0.55 16 2 N -0.46 -7.17 5.31 -176.83 -0.94 -8.10 16 3 C 0.04 0.51 6.87 -2.43 -0.02 0.49 16 4 C -0.08 -0.92 7.04 -26.61 -0.19 -1.11 16 5 C -0.16 -2.36 6.23 -104.04 -0.65 -3.01 16 6 C -0.09 -1.27 10.03 -39.67 -0.40 -1.67 16 7 C -0.15 -2.27 10.06 -39.53 -0.40 -2.67 16 8 C -0.09 -1.61 9.00 -39.68 -0.36 -1.97 16 9 C -0.08 -1.50 5.34 -104.31 -0.56 -2.06 16 10 C 0.13 2.55 2.08 -68.86 -0.14 2.41 16 11 H 0.09 1.80 4.94 -51.93 -0.26 1.55 16 12 N -0.83 -15.77 8.73 -5.65 -0.05 -15.82 16 13 C -0.04 -1.02 2.41 -27.88 -0.07 -1.09 16 14 C -0.52 -14.18 9.09 -34.44 -0.31 -14.49 16 15 H 0.07 2.11 7.26 -52.49 -0.38 1.73 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 18 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 22 C 0.12 2.00 5.82 -83.40 -0.49 1.52 16 23 H 0.03 0.50 8.02 -51.93 -0.42 0.08 16 24 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 25 H 0.11 1.80 4.84 -51.93 -0.25 1.55 16 26 H 0.05 0.60 7.87 -51.93 -0.41 0.20 16 27 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 31 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.13 2.36 5.95 -52.48 -0.31 2.05 16 33 H 0.33 6.18 8.99 -39.29 -0.35 5.82 16 34 H 0.35 6.89 7.76 -39.29 -0.31 6.59 16 35 H 0.01 0.34 7.33 -51.93 -0.38 -0.04 16 36 H 0.02 0.42 6.21 -51.93 -0.32 0.10 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 289.81 15.07 4.37 4.37 Total: -1.00 -29.95 289.81 -8.79 -38.73 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -5.09 Total: 11.58 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -3.18 Total: -21.23 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.21 Total: -50.21 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.95 -8.79 -38.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261063914.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.725 kcal (2) G-P(sol) polarization free energy of solvation -29.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds