Wall clock time and date at job start Mon Mar 30 2020 04:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.47909 * 110.99818 * 2 1 4 4 C 1.54602 * 102.62151 * 149.11090 * 3 2 1 5 5 C 1.51573 * 102.83657 * 334.46427 * 4 3 2 6 6 C 1.37918 * 131.56067 * 196.07285 * 5 4 3 7 7 C 1.38302 * 120.08238 * 179.64905 * 6 5 4 8 8 C 1.38309 * 119.87700 * 359.72526 * 7 6 5 9 9 C 1.37905 * 120.26831 * 0.65003 * 8 7 6 10 10 C 1.50702 * 119.90278 * 179.72666 * 9 8 7 11 11 H 1.08998 * 109.46861 * 132.25108 * 10 9 8 12 12 N 1.46899 * 109.47114 * 252.25129 * 10 9 8 13 13 C 1.52999 * 109.47202 * 12.25049 * 10 9 8 14 14 C 1.50700 * 109.47153 * 177.05439 * 13 10 9 15 15 H 1.08000 * 119.99890 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00046 * 180.02562 * 14 13 10 17 17 N 1.31511 * 120.00200 * 179.97438 * 16 14 13 18 18 Si 1.86809 * 119.99939 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47119 * 89.99767 * 18 16 14 20 20 H 1.48496 * 109.46814 * 210.00102 * 18 16 14 21 21 H 1.48502 * 109.47046 * 329.99746 * 18 16 14 22 22 C 1.38958 * 107.95340 * 15.93809 * 5 4 3 23 23 H 1.08994 * 109.47007 * 289.18825 * 1 2 3 24 24 H 1.09000 * 109.46980 * 49.19261 * 1 2 3 25 25 H 1.09004 * 109.46680 * 169.18966 * 1 2 3 26 26 H 1.09000 * 110.77985 * 30.82727 * 3 2 1 27 27 H 1.09003 * 110.93806 * 267.46887 * 3 2 1 28 28 H 1.08999 * 110.73993 * 216.12522 * 4 3 2 29 29 H 1.08995 * 110.89442 * 92.87670 * 4 3 2 30 30 H 1.08005 * 119.96024 * 359.61927 * 6 5 4 31 31 H 1.07991 * 120.06179 * 180.02562 * 7 6 5 32 32 H 1.08003 * 119.86770 * 180.40077 * 8 7 6 33 33 H 1.00899 * 111.00070 * 60.00080 * 12 10 9 34 34 H 1.00896 * 111.00373 * 183.95242 * 12 10 9 35 35 H 1.09004 * 109.46848 * 57.05378 * 13 10 9 36 36 H 1.08998 * 109.46961 * 297.06170 * 13 10 9 37 37 H 0.97001 * 119.99749 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9991 1.3809 0.0000 4 6 3.3288 1.2323 0.7745 5 6 3.0803 0.0127 1.6395 6 6 3.7401 -0.4715 2.7496 7 6 3.2975 -1.6253 3.3706 8 6 2.1883 -2.2899 2.8798 9 6 1.5297 -1.8142 1.7654 10 6 0.3257 -2.5483 1.2339 11 1 -0.4800 -1.8381 1.0479 12 7 0.6799 -3.2266 -0.0200 13 6 -0.1348 -3.5841 2.2615 14 6 -1.3812 -4.2680 1.7617 15 1 -1.8026 -3.9917 0.8064 16 6 -1.9837 -5.2462 2.5239 17 7 -3.0717 -5.8426 2.0880 18 14 -1.2553 -5.7236 4.1766 19 1 -1.8486 -4.8766 5.2422 20 1 -1.5538 -7.1513 4.4552 21 1 0.2157 -5.5223 4.1459 22 6 1.9709 -0.6531 1.1326 23 1 -0.3633 0.3377 0.9705 24 1 -0.3633 0.6716 -0.7779 25 1 -0.3633 -1.0095 -0.1928 26 1 1.3207 2.0555 0.5222 27 1 2.1807 1.7284 -1.0171 28 1 3.5166 2.1112 1.3912 29 1 4.1596 1.0579 0.0908 30 1 4.6037 0.0507 3.1343 31 1 3.8141 -2.0039 4.2401 32 1 1.8390 -3.1873 3.3687 33 1 1.4252 -3.8908 0.1262 34 1 -0.1267 -3.6729 -0.4302 35 1 -0.3477 -3.0871 3.2080 36 1 0.6517 -4.3243 2.4087 37 1 -3.4953 -6.5312 2.6241 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261063914.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:38 Heat of formation + Delta-G solvation = 22.309274 kcal Electronic energy + Delta-G solvation = -18103.631375 eV Core-core repulsion = 15458.918909 eV Total energy + Delta-G solvation = -2644.712466 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.75647 -38.20941 -36.98178 -34.63870 -32.94910 -30.70183 -30.65302 -29.59661 -27.13899 -25.40078 -23.93762 -22.95166 -21.74875 -20.50737 -19.11615 -17.31651 -17.16634 -16.67160 -16.44559 -16.25900 -15.82511 -15.23020 -14.99689 -14.57126 -14.15956 -14.10836 -13.89817 -13.68715 -13.54992 -13.03136 -12.86458 -12.74490 -12.58558 -12.37614 -12.16394 -11.96065 -11.59004 -11.49530 -11.05692 -10.81479 -10.71776 -9.54908 -9.37074 -8.52286 -8.32517 -6.35927 0.49439 0.53702 1.30668 1.32180 1.42886 2.31352 2.73688 3.00853 3.03572 3.67834 3.76361 3.94877 4.04481 4.21047 4.27727 4.30507 4.44566 4.51477 4.54236 4.66713 4.67879 4.77995 4.83698 5.00236 5.05014 5.07940 5.13506 5.18002 5.35120 5.49506 5.58816 5.64514 5.72186 5.90699 6.12177 6.21502 6.35037 6.43203 6.70808 6.71525 7.29079 8.83145 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030075 B = 0.006968 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.786080 B = 4017.259111 C = 4706.362491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.478 5.478 3 C 0.040 3.960 4 C -0.073 4.073 5 C -0.162 4.162 6 C -0.085 4.085 7 C -0.150 4.150 8 C -0.112 4.112 9 C -0.108 4.108 10 C 0.139 3.861 11 H 0.078 0.922 12 N -0.820 5.820 13 C -0.034 4.034 14 C -0.523 4.523 15 H 0.042 0.958 16 C 0.011 3.989 17 N -0.945 5.945 18 Si 0.942 3.058 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.250 1.250 22 C 0.100 3.900 23 H 0.026 0.974 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.110 0.890 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.116 0.884 33 H 0.331 0.669 34 H 0.339 0.661 35 H 0.011 0.989 36 H 0.018 0.982 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.349 14.714 0.342 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.192 5.192 3 C -0.086 4.086 4 C -0.110 4.110 5 C -0.165 4.165 6 C -0.104 4.104 7 C -0.169 4.169 8 C -0.131 4.131 9 C -0.111 4.111 10 C 0.028 3.972 11 H 0.096 0.904 12 N -0.347 5.347 13 C -0.073 4.073 14 C -0.561 4.561 15 H 0.061 0.939 16 C -0.187 4.187 17 N -0.586 5.586 18 Si 0.766 3.234 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.174 1.174 22 C 0.000 4.000 23 H 0.045 0.955 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.128 0.872 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.167 0.833 31 H 0.162 0.838 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.030 0.970 36 H 0.036 0.964 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.499 15.121 -0.454 20.954 hybrid contribution -1.104 -1.510 1.714 2.536 sum 13.395 13.611 1.260 19.139 Atomic orbital electron populations 1.22791 0.86112 1.04253 1.00602 1.60364 1.09148 1.15000 1.34666 1.23446 0.95465 0.87057 1.02606 1.21300 0.97743 0.95145 0.96835 1.20927 0.98052 0.99610 0.97913 1.20643 0.99729 0.95824 0.94158 1.21220 0.97259 0.96630 1.01785 1.21106 0.96077 1.00067 0.95892 1.19446 0.98892 0.95910 0.96847 1.20269 0.93407 0.94563 0.88986 0.90382 1.59164 1.13279 1.36688 1.25573 1.20307 0.95176 0.95431 0.96344 1.21335 1.09872 1.19589 1.05349 0.93938 1.25882 0.94971 0.95964 1.01865 1.70049 1.21257 1.27107 1.40169 0.85778 0.80282 0.77376 0.79925 1.19600 1.21067 1.17365 1.19610 0.96438 0.94689 0.89221 0.95513 0.89287 0.90228 0.91743 0.87177 0.88042 0.88807 0.83317 0.83845 0.86652 0.85781 0.84816 0.97050 0.96374 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 8.07 127.69 1.03 1.29 16 2 N -0.48 -14.08 5.31 -713.38 -3.79 -17.87 16 3 C 0.04 0.82 6.87 86.65 0.60 1.41 16 4 C -0.07 -1.40 7.04 30.67 0.22 -1.19 16 5 C -0.16 -4.34 6.23 -19.49 -0.12 -4.46 16 6 C -0.09 -2.08 10.03 22.21 0.22 -1.86 16 7 C -0.15 -4.10 10.06 22.30 0.22 -3.88 16 8 C -0.11 -3.85 9.00 22.21 0.20 -3.65 16 9 C -0.11 -3.94 5.34 -19.66 -0.11 -4.05 16 10 C 0.14 5.67 2.08 44.17 0.09 5.76 16 11 H 0.08 3.34 4.94 -2.39 -0.01 3.33 16 12 N -0.82 -32.19 8.73 -171.80 -1.50 -33.69 16 13 C -0.03 -1.58 2.41 29.85 0.07 -1.51 16 14 C -0.52 -29.34 9.09 25.60 0.23 -29.11 16 15 H 0.04 2.58 7.26 -2.91 -0.02 2.56 16 16 C 0.01 0.61 5.47 84.65 0.46 1.08 16 17 N -0.95 -58.61 13.96 21.45 0.30 -58.31 16 18 Si 0.94 44.48 27.47 68.60 1.88 46.37 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 21 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 22 C 0.10 3.25 5.82 38.28 0.22 3.47 16 23 H 0.03 0.80 8.02 -2.39 -0.02 0.78 16 24 H 0.09 2.14 8.07 -2.39 -0.02 2.12 16 25 H 0.08 2.79 4.84 -2.38 -0.01 2.77 16 26 H 0.06 1.21 7.87 -2.39 -0.02 1.19 16 27 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 31 H 0.14 3.10 8.06 -2.92 -0.02 3.07 16 32 H 0.12 4.17 5.95 -2.91 -0.02 4.15 16 33 H 0.33 12.70 8.99 -89.69 -0.81 11.89 16 34 H 0.34 14.16 7.76 -89.70 -0.70 13.47 16 35 H 0.01 0.53 7.33 -2.38 -0.02 0.52 16 36 H 0.02 0.85 6.21 -2.39 -0.01 0.83 16 37 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -65.87 289.81 -0.22 -66.10 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: -0.47 Total: 34.09 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 3.34 Total: -36.69 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -4.99 Total: -109.87 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.37 kcal Total: -65.87 -0.22 -66.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261063914.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.405 kcal (2) G-P(sol) polarization free energy of solvation -65.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds