Wall clock time and date at job start Mon Mar 30 2020 04:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.48054 * 110.99500 * 2 1 4 4 C 1.51179 * 105.67138 * 146.96755 * 3 2 1 5 5 C 1.38184 * 131.78381 * 162.49881 * 4 3 2 6 6 C 1.38220 * 120.03369 * 179.97438 * 5 4 3 7 7 C 1.38256 * 120.00224 * 0.28300 * 6 5 4 8 8 C 1.50698 * 119.99921 * 179.71965 * 7 6 5 9 9 H 1.09004 * 109.47170 * 159.99643 * 8 7 6 10 10 N 1.46896 * 109.47233 * 39.99732 * 8 7 6 11 11 C 1.53001 * 109.47106 * 279.99452 * 8 7 6 12 12 C 1.50702 * 109.47061 * 184.99900 * 11 8 7 13 13 H 1.07996 * 120.00271 * 0.02562 * 12 11 8 14 14 C 1.37877 * 119.99530 * 180.02562 * 12 11 8 15 15 N 1.31506 * 120.00342 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99448 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47270 * 60.00006 * 16 14 12 18 18 H 1.48503 * 109.46778 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46942 * 299.99498 * 16 14 12 20 20 C 1.38229 * 120.00132 * 359.46383 * 7 6 5 21 21 C 1.38172 * 120.02560 * 0.52717 * 20 7 6 22 22 C 1.48054 * 110.99945 * 115.00140 * 2 1 3 23 23 H 1.08999 * 109.47288 * 304.99640 * 1 2 3 24 24 H 1.08996 * 109.47050 * 64.99723 * 1 2 3 25 25 H 1.09001 * 109.46883 * 184.99456 * 1 2 3 26 26 H 1.08992 * 110.21430 * 27.91566 * 3 2 1 27 27 H 1.09001 * 110.20751 * 266.01159 * 3 2 1 28 28 H 1.08005 * 119.98126 * 359.97438 * 5 4 3 29 29 H 1.08002 * 119.99600 * 179.97438 * 6 5 4 30 30 H 1.00897 * 111.00386 * 176.04463 * 10 8 7 31 31 H 1.00907 * 110.99980 * 300.00141 * 10 8 7 32 32 H 1.08996 * 109.47182 * 305.00262 * 11 8 7 33 33 H 1.08997 * 109.46734 * 65.00249 * 11 8 7 34 34 H 0.97002 * 119.99874 * 180.02562 * 15 14 12 35 35 H 1.08002 * 119.98456 * 180.25954 * 20 7 6 36 36 H 1.09001 * 110.20196 * 93.98090 * 22 2 1 37 37 H 1.09002 * 110.20915 * 332.08597 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9995 1.3822 0.0000 4 6 3.2851 1.3263 0.7935 5 6 4.3571 2.1948 0.8722 6 6 5.4287 1.8984 1.6934 7 6 5.4311 0.7296 2.4320 8 6 6.6024 0.4035 3.3224 9 1 6.2976 -0.3290 4.0700 10 7 7.0623 1.6263 3.9941 11 6 7.7402 -0.1732 2.4776 12 6 8.8635 -0.6128 3.3810 13 1 8.7746 -0.4934 4.4506 14 6 10.0047 -1.1677 2.8417 15 7 10.1129 -1.3136 1.5393 16 14 11.3968 -1.7133 3.9616 17 1 10.9002 -2.7533 4.8979 18 1 12.5018 -2.2718 3.1415 19 1 11.8955 -0.5479 4.7353 20 6 4.3569 -0.1371 2.3578 21 6 3.2853 0.1586 1.5373 22 6 1.9996 -0.5842 1.2527 23 1 -0.3634 0.5894 0.8418 24 1 -0.3633 0.4343 -0.9313 25 1 -0.3633 -1.0238 0.0895 26 1 1.2907 2.0577 0.4788 27 1 2.2008 1.7083 -1.0204 28 1 4.3575 3.1056 0.2919 29 1 6.2663 2.5774 1.7542 30 1 7.8054 1.4233 4.6457 31 1 7.3506 2.3215 3.3219 32 1 7.3740 -1.0288 1.9104 33 1 8.1046 0.5898 1.7898 34 1 10.9156 -1.7043 1.1600 35 1 4.3573 -1.0480 2.9381 36 1 2.2008 -1.6468 1.1168 37 1 1.2907 -0.4357 2.0673 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261087287.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:50 Heat of formation + Delta-G solvation = 28.312594 kcal Electronic energy + Delta-G solvation = -17289.858904 eV Core-core repulsion = 14645.406761 eV Total energy + Delta-G solvation = -2644.452142 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.22646 -37.52204 -34.95579 -32.49675 -31.23743 -30.64458 -28.12585 -27.40941 -26.42155 -24.08125 -22.27555 -21.53121 -21.09061 -19.14674 -16.77967 -16.06859 -15.80042 -15.44225 -15.17149 -14.62306 -14.08036 -13.76824 -13.61562 -13.29518 -13.00260 -12.63575 -12.58069 -12.38438 -12.09908 -11.68164 -11.58749 -11.55916 -11.06071 -10.93691 -10.68053 -10.52272 -10.18311 -9.91103 -9.19170 -8.90240 -8.51004 -8.39962 -8.05545 -7.62323 -6.08005 -4.13097 1.69386 1.75128 3.27957 3.33268 3.34961 3.90482 4.08111 4.38542 4.51770 4.64046 5.12017 5.14811 5.25227 5.26534 5.34024 5.42600 5.46458 5.55561 5.62644 5.70600 5.72536 5.89133 6.00041 6.12755 6.33347 6.47149 6.50088 6.71799 6.75491 6.86481 6.91532 7.11052 7.34721 7.47304 7.58377 7.85476 8.04375 8.20649 8.32536 8.93475 9.52069 11.02512 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.040462 B = 0.004571 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.837428 B = 6123.851664 C = 6332.247760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.511 5.511 3 C 0.081 3.919 4 C -0.126 4.126 5 C -0.099 4.099 6 C -0.104 4.104 7 C -0.041 4.041 8 C 0.125 3.875 9 H 0.076 0.924 10 N -0.840 5.840 11 C 0.001 3.999 12 C -0.528 4.528 13 H 0.056 0.944 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.097 4.097 21 C -0.106 4.106 22 C 0.078 3.922 23 H 0.030 0.970 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.346 0.654 31 H 0.329 0.671 32 H 0.020 0.980 33 H 0.018 0.982 34 H 0.262 0.738 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.819 5.037 -1.369 16.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.234 5.234 3 C -0.046 4.046 4 C -0.126 4.126 5 C -0.117 4.117 6 C -0.123 4.123 7 C -0.041 4.041 8 C 0.014 3.986 9 H 0.094 0.906 10 N -0.368 5.368 11 C -0.037 4.037 12 C -0.566 4.566 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.529 5.529 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.116 4.116 21 C -0.107 4.107 22 C -0.049 4.049 23 H 0.048 0.952 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.105 0.895 28 H 0.134 0.866 29 H 0.141 0.859 30 H 0.160 0.840 31 H 0.140 0.860 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.138 0.862 36 H 0.108 0.892 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.311 4.696 -1.702 17.058 hybrid contribution 1.534 -0.174 0.675 1.685 sum -14.777 4.521 -1.027 15.487 Atomic orbital electron populations 1.22598 0.87466 1.02207 1.01187 1.65209 1.08333 1.15302 1.34547 1.21559 0.92982 0.90050 1.00053 1.20332 0.96189 0.96338 0.99762 1.20356 0.92962 0.98955 0.99456 1.20842 0.97895 0.97206 0.96332 1.20076 0.94725 0.93294 0.96016 1.20544 0.92181 0.91563 0.94353 0.90581 1.59270 1.44487 1.11257 1.21830 1.19788 0.91883 0.96705 0.95321 1.21118 1.00977 1.41429 0.93082 0.92550 1.25014 0.98513 0.95650 0.94968 1.69961 1.28210 1.44225 1.10459 0.86643 0.81658 0.79060 0.80555 1.20180 1.21281 1.20186 1.20303 0.92231 0.99812 0.99287 1.20345 0.95829 0.96333 0.98178 1.21595 0.92955 0.99765 0.90601 0.95154 0.90985 0.90975 0.92641 0.89529 0.86568 0.85944 0.84013 0.85977 0.96158 0.96412 0.92814 0.86210 0.89229 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.35 60.07 0.56 0.69 16 2 N -0.51 -6.40 5.76 -243.20 -1.40 -7.80 16 3 C 0.08 1.01 6.61 -4.10 -0.03 0.98 16 4 C -0.13 -1.91 6.26 -104.33 -0.65 -2.56 16 5 C -0.10 -1.52 10.04 -39.61 -0.40 -1.92 16 6 C -0.10 -1.80 9.29 -39.58 -0.37 -2.17 16 7 C -0.04 -0.76 4.96 -104.62 -0.52 -1.28 16 8 C 0.12 2.56 2.99 -68.87 -0.21 2.36 16 9 H 0.08 1.59 8.00 -51.93 -0.42 1.18 16 10 N -0.84 -15.72 9.02 -5.66 -0.05 -15.77 16 11 C 0.00 0.04 4.60 -27.88 -0.13 -0.09 16 12 C -0.53 -14.28 8.55 -34.44 -0.29 -14.57 16 13 H 0.06 1.46 7.15 -52.49 -0.38 1.09 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 16 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.10 -1.70 9.67 -39.61 -0.38 -2.08 16 21 C -0.11 -1.68 6.26 -104.33 -0.65 -2.34 16 22 C 0.08 1.02 6.61 -4.10 -0.03 0.99 16 23 H 0.03 0.26 7.91 -51.93 -0.41 -0.15 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.61 7.69 -51.93 -0.40 0.21 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 29 H 0.12 2.00 6.67 -52.49 -0.35 1.65 16 30 H 0.35 6.59 7.90 -39.29 -0.31 6.28 16 31 H 0.33 5.86 7.35 -39.29 -0.29 5.57 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.12 1.94 8.03 -52.49 -0.42 1.52 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 0.67 7.77 -51.93 -0.40 0.26 16 LS Contribution 303.27 15.07 4.57 4.57 Total: -1.00 -30.06 303.27 -9.83 -39.88 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.47 Total: 8.99 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -3.19 Total: -20.39 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -0.72 Total: -49.23 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.06 -9.83 -39.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087287.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.197 kcal (2) G-P(sol) polarization free energy of solvation -30.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds