Wall clock time and date at job start Mon Mar 30 2020 04:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.48054 * 110.99500 * 2 1 4 4 C 1.51179 * 105.67138 * 146.96755 * 3 2 1 5 5 C 1.38184 * 131.78381 * 162.49881 * 4 3 2 6 6 C 1.38220 * 120.03369 * 179.97438 * 5 4 3 7 7 C 1.38256 * 120.00224 * 0.28300 * 6 5 4 8 8 C 1.50698 * 119.99921 * 179.71965 * 7 6 5 9 9 H 1.09004 * 109.47170 * 159.99643 * 8 7 6 10 10 N 1.46896 * 109.47233 * 39.99732 * 8 7 6 11 11 C 1.53001 * 109.47106 * 279.99452 * 8 7 6 12 12 C 1.50702 * 109.47061 * 184.99900 * 11 8 7 13 13 H 1.07996 * 120.00271 * 0.02562 * 12 11 8 14 14 C 1.37877 * 119.99530 * 180.02562 * 12 11 8 15 15 N 1.31506 * 120.00342 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99448 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47270 * 60.00006 * 16 14 12 18 18 H 1.48503 * 109.46778 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46942 * 299.99498 * 16 14 12 20 20 C 1.38229 * 120.00132 * 359.46383 * 7 6 5 21 21 C 1.38172 * 120.02560 * 0.52717 * 20 7 6 22 22 C 1.48054 * 110.99945 * 115.00140 * 2 1 3 23 23 H 1.08999 * 109.47288 * 304.99640 * 1 2 3 24 24 H 1.08996 * 109.47050 * 64.99723 * 1 2 3 25 25 H 1.09001 * 109.46883 * 184.99456 * 1 2 3 26 26 H 1.08992 * 110.21430 * 27.91566 * 3 2 1 27 27 H 1.09001 * 110.20751 * 266.01159 * 3 2 1 28 28 H 1.08005 * 119.98126 * 359.97438 * 5 4 3 29 29 H 1.08002 * 119.99600 * 179.97438 * 6 5 4 30 30 H 1.00897 * 111.00386 * 176.04463 * 10 8 7 31 31 H 1.00907 * 110.99980 * 300.00141 * 10 8 7 32 32 H 1.08996 * 109.47182 * 305.00262 * 11 8 7 33 33 H 1.08997 * 109.46734 * 65.00249 * 11 8 7 34 34 H 0.97002 * 119.99874 * 180.02562 * 15 14 12 35 35 H 1.08002 * 119.98456 * 180.25954 * 20 7 6 36 36 H 1.09001 * 110.20196 * 93.98090 * 22 2 1 37 37 H 1.09002 * 110.20915 * 332.08597 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9995 1.3822 0.0000 4 6 3.2851 1.3263 0.7935 5 6 4.3571 2.1948 0.8722 6 6 5.4287 1.8984 1.6934 7 6 5.4311 0.7296 2.4320 8 6 6.6024 0.4035 3.3224 9 1 6.2976 -0.3290 4.0700 10 7 7.0623 1.6263 3.9941 11 6 7.7402 -0.1732 2.4776 12 6 8.8635 -0.6128 3.3810 13 1 8.7746 -0.4934 4.4506 14 6 10.0047 -1.1677 2.8417 15 7 10.1129 -1.3136 1.5393 16 14 11.3968 -1.7133 3.9616 17 1 10.9002 -2.7533 4.8979 18 1 12.5018 -2.2718 3.1415 19 1 11.8955 -0.5479 4.7353 20 6 4.3569 -0.1371 2.3578 21 6 3.2853 0.1586 1.5373 22 6 1.9996 -0.5842 1.2527 23 1 -0.3634 0.5894 0.8418 24 1 -0.3633 0.4343 -0.9313 25 1 -0.3633 -1.0238 0.0895 26 1 1.2907 2.0577 0.4788 27 1 2.2008 1.7083 -1.0204 28 1 4.3575 3.1056 0.2919 29 1 6.2663 2.5774 1.7542 30 1 7.8054 1.4233 4.6457 31 1 7.3506 2.3215 3.3219 32 1 7.3740 -1.0288 1.9104 33 1 8.1046 0.5898 1.7898 34 1 10.9156 -1.7043 1.1600 35 1 4.3573 -1.0480 2.9381 36 1 2.2008 -1.6468 1.1168 37 1 1.2907 -0.4357 2.0673 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261087287.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:50 Heat of formation + Delta-G solvation = 7.657551 kcal Electronic energy + Delta-G solvation = -17290.754574 eV Core-core repulsion = 14645.406761 eV Total energy + Delta-G solvation = -2645.347812 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.38466 -38.81027 -36.47564 -34.49246 -32.43983 -31.84467 -29.96322 -28.65695 -27.48999 -25.82230 -23.41410 -23.15829 -22.17400 -20.60761 -18.74994 -17.25961 -17.13521 -16.63934 -16.55457 -16.36906 -15.32480 -14.99105 -14.84064 -14.73934 -14.29590 -14.15870 -13.92871 -13.76523 -13.54383 -13.17461 -12.88390 -12.74381 -12.50304 -12.41972 -12.27663 -12.11798 -11.81881 -11.66581 -11.18284 -10.62321 -9.94310 -9.75154 -9.42113 -9.04723 -8.22586 -6.35695 0.40415 0.47013 1.39554 1.41821 1.49701 2.38004 2.79038 3.01892 3.10262 3.39167 3.56830 3.90710 4.08255 4.20382 4.29780 4.32331 4.41214 4.54187 4.57594 4.60300 4.64159 4.71143 4.83779 4.87554 5.01941 5.10711 5.16601 5.31816 5.42941 5.45130 5.51220 5.73104 5.78179 5.80568 6.00188 6.07560 6.14210 6.37293 6.70272 6.80588 7.34567 8.88314 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.040462 B = 0.004571 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.837428 B = 6123.851664 C = 6332.247760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.527 5.527 3 C 0.084 3.916 4 C -0.128 4.128 5 C -0.100 4.100 6 C -0.118 4.118 7 C -0.069 4.069 8 C 0.140 3.860 9 H 0.069 0.931 10 N -0.827 5.827 11 C 0.013 3.987 12 C -0.540 4.540 13 H 0.067 0.933 14 C 0.003 3.997 15 N -0.932 5.932 16 Si 0.966 3.034 17 H -0.268 1.268 18 H -0.287 1.287 19 H -0.263 1.263 20 C -0.113 4.113 21 C -0.116 4.116 22 C 0.081 3.919 23 H 0.039 0.961 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.146 0.854 29 H 0.125 0.875 30 H 0.345 0.655 31 H 0.335 0.665 32 H -0.017 1.017 33 H -0.008 1.008 34 H 0.263 0.737 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.174 5.684 -1.034 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.251 5.251 3 C -0.043 4.043 4 C -0.129 4.129 5 C -0.118 4.118 6 C -0.136 4.136 7 C -0.069 4.069 8 C 0.029 3.971 9 H 0.087 0.913 10 N -0.356 5.356 11 C -0.026 4.026 12 C -0.578 4.578 13 H 0.085 0.915 14 C -0.195 4.195 15 N -0.572 5.572 16 Si 0.790 3.210 17 H -0.193 1.193 18 H -0.213 1.213 19 H -0.188 1.188 20 C -0.132 4.132 21 C -0.117 4.117 22 C -0.046 4.046 23 H 0.058 0.942 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.116 0.884 28 H 0.164 0.836 29 H 0.143 0.857 30 H 0.158 0.842 31 H 0.147 0.853 32 H 0.002 0.998 33 H 0.011 0.989 34 H 0.072 0.928 35 H 0.139 0.861 36 H 0.108 0.892 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.686 5.359 -1.354 18.530 hybrid contribution 1.865 -0.357 0.510 1.966 sum -15.822 5.001 -0.843 16.615 Atomic orbital electron populations 1.22689 0.85282 1.03198 1.02304 1.65228 1.10491 1.15273 1.34102 1.21634 0.91765 0.90614 1.00302 1.20821 0.97116 0.95656 0.99282 1.20657 0.92216 1.00044 0.98870 1.20982 0.98891 0.96886 0.96833 1.19985 0.94821 0.94869 0.97254 1.20222 0.91426 0.91817 0.93684 0.91282 1.59259 1.44320 1.10424 1.21571 1.19645 0.93320 0.94647 0.94967 1.21536 1.01477 1.40922 0.93816 0.91517 1.25965 1.01449 0.95722 0.96391 1.70111 1.29074 1.45419 1.12553 0.85494 0.78032 0.78991 0.78476 1.19330 1.21262 1.18810 1.20416 0.92804 0.99810 1.00197 1.20704 0.96354 0.97159 0.97461 1.21622 0.91908 0.99477 0.91639 0.94226 0.89643 0.90103 0.90620 0.88438 0.83636 0.85721 0.84168 0.85313 0.99818 0.98923 0.92830 0.86092 0.89189 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.35 127.69 1.19 1.39 16 2 N -0.53 -11.83 5.76 -923.35 -5.32 -17.15 16 3 C 0.08 1.84 6.61 85.49 0.57 2.41 16 4 C -0.13 -3.68 6.26 -19.68 -0.12 -3.81 16 5 C -0.10 -2.93 10.04 22.25 0.22 -2.71 16 6 C -0.12 -4.07 9.29 22.27 0.21 -3.86 16 7 C -0.07 -2.64 4.96 -19.86 -0.10 -2.74 16 8 C 0.14 5.94 2.99 44.17 0.13 6.07 16 9 H 0.07 2.98 8.00 -2.38 -0.02 2.96 16 10 N -0.83 -31.18 9.02 -171.80 -1.55 -32.73 16 11 C 0.01 0.68 4.60 29.85 0.14 0.81 16 12 C -0.54 -29.71 8.55 25.60 0.22 -29.50 16 13 H 0.07 3.46 7.15 -2.91 -0.02 3.44 16 14 C 0.00 0.17 5.46 84.66 0.46 0.63 16 15 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 16 Si 0.97 43.64 29.54 68.60 2.03 45.66 16 17 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 20 C -0.11 -4.02 9.67 22.25 0.22 -3.80 16 21 C -0.12 -3.59 6.26 -19.68 -0.12 -3.71 16 22 C 0.08 1.97 6.61 85.49 0.57 2.53 16 23 H 0.04 0.53 7.91 -2.39 -0.02 0.51 16 24 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 26 H 0.08 1.38 7.69 -2.39 -0.02 1.36 16 27 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 29 H 0.12 4.11 6.67 -2.91 -0.02 4.09 16 30 H 0.35 13.10 7.90 -89.70 -0.71 12.39 16 31 H 0.33 12.03 7.35 -89.69 -0.66 11.37 16 32 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 33 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 34 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.12 4.08 8.03 -2.91 -0.02 4.05 16 36 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.07 1.55 7.77 -2.39 -0.02 1.53 16 Total: -1.00 -65.28 303.27 -1.28 -66.56 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: -0.30 Total: 30.33 kcal Atomic # 6 Polarization: -39.86 SS G_CDS: 3.58 Total: -36.28 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -6.58 Total: -106.27 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -65.28 -1.28 -66.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087287.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.218 kcal (2) G-P(sol) polarization free energy of solvation -65.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds