Wall clock time and date at job start Mon Mar 30 2020 04:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47914 * 111.00213 * 2 1 4 4 C 1.54592 * 102.62421 * 149.11092 * 3 2 1 5 5 C 1.51573 * 102.83675 * 334.46875 * 4 3 2 6 6 C 1.37925 * 131.56015 * 196.06915 * 5 4 3 7 7 C 1.38299 * 120.07847 * 179.64540 * 6 5 4 8 8 C 1.50702 * 120.05807 * 180.02562 * 7 6 5 9 9 H 1.09006 * 109.46699 * 0.02562 * 8 7 6 10 10 C 1.50696 * 109.47766 * 240.00309 * 8 7 6 11 11 H 1.07995 * 119.99838 * 266.02210 * 10 8 7 12 12 C 1.37884 * 119.99655 * 86.01453 * 10 8 7 13 13 N 1.31505 * 120.00443 * 5.41123 * 12 10 8 14 14 Si 1.86796 * 119.99545 * 185.41059 * 12 10 8 15 15 H 1.48501 * 109.47613 * 59.99958 * 14 12 10 16 16 H 1.48497 * 109.47071 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47332 * 300.00095 * 14 12 10 18 18 C 1.53001 * 109.47062 * 120.00093 * 8 7 6 19 19 N 1.46895 * 109.47494 * 185.45753 * 18 8 7 20 20 C 1.38298 * 119.88567 * 0.02562 * 7 6 5 21 21 C 1.37913 * 120.26458 * 0.09286 * 20 7 6 22 22 C 1.38958 * 107.95802 * 15.94007 * 5 4 3 23 23 H 1.08998 * 109.47402 * 300.02499 * 1 2 3 24 24 H 1.08997 * 109.47075 * 60.02766 * 1 2 3 25 25 H 1.09007 * 109.46845 * 180.02562 * 1 2 3 26 26 H 1.09003 * 110.77369 * 30.82677 * 3 2 1 27 27 H 1.09000 * 110.77845 * 267.40349 * 3 2 1 28 28 H 1.08997 * 110.73904 * 216.13103 * 4 3 2 29 29 H 1.08999 * 110.89749 * 92.87770 * 4 3 2 30 30 H 1.08004 * 119.96181 * 359.62295 * 6 5 4 31 31 H 0.97001 * 120.00332 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.47119 * 305.45652 * 18 8 7 33 33 H 1.09000 * 109.47028 * 65.45616 * 18 8 7 34 34 H 1.00893 * 111.00294 * 174.16493 * 19 18 8 35 35 H 1.00900 * 110.99824 * 298.12004 * 19 18 8 36 36 H 1.08002 * 119.86896 * 180.12215 * 20 7 6 37 37 H 1.07998 * 119.89735 * 180.27808 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3809 0.0000 4 6 3.3288 1.2323 0.7745 5 6 3.0803 0.0127 1.6394 6 6 3.7401 -0.4716 2.7495 7 6 3.2975 -1.6254 3.3705 8 6 4.0184 -2.1538 4.5837 9 1 4.8566 -1.4989 4.8222 10 6 4.5305 -3.5422 4.2989 11 1 3.9394 -4.4029 4.5749 12 6 5.7536 -3.7135 3.6858 13 7 6.5205 -2.6726 3.4459 14 14 6.3211 -5.4244 3.1959 15 1 5.3528 -6.0111 2.2349 16 1 7.6597 -5.3384 2.5587 17 1 6.4019 -6.2841 4.4041 18 6 3.0538 -2.1996 5.7705 19 7 3.7865 -2.5896 6.9824 20 6 2.1920 -2.2934 2.8760 21 6 1.5301 -1.8146 1.7649 22 6 1.9709 -0.6532 1.1325 23 1 -0.3634 0.5142 0.8897 24 1 -0.3633 0.5134 -0.8902 25 1 -0.3633 -1.0277 0.0005 26 1 1.3206 2.0555 0.5223 27 1 2.1808 1.7253 -1.0181 28 1 3.5165 2.1112 1.3912 29 1 4.1596 1.0578 0.0907 30 1 4.6037 0.0506 3.1342 31 1 7.3808 -2.7931 3.0143 32 1 2.6095 -1.2149 5.9157 33 1 2.2672 -2.9274 5.5715 34 1 3.1934 -2.5352 7.7968 35 1 4.1823 -3.5126 6.8843 36 1 1.8454 -3.1933 3.3623 37 1 0.6648 -2.3385 1.3865 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261087946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:54 Heat of formation + Delta-G solvation = 29.518711 kcal Electronic energy + Delta-G solvation = -17875.481598 eV Core-core repulsion = 15231.081757 eV Total energy + Delta-G solvation = -2644.399841 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.08142 -36.92978 -34.36717 -32.27660 -32.23578 -30.07003 -28.45394 -26.95479 -25.19771 -24.20179 -22.22398 -21.26139 -20.37126 -19.06976 -16.52278 -16.02563 -15.53802 -14.97447 -14.91165 -14.72494 -14.09682 -13.53967 -13.23936 -12.89696 -12.78196 -12.67459 -12.19298 -12.08596 -11.61104 -11.52809 -11.40512 -11.17004 -10.95308 -10.88835 -10.56265 -10.31827 -9.97512 -9.61026 -9.24259 -8.86529 -8.42671 -7.94679 -7.71491 -6.90347 -6.00920 -4.04553 2.23699 2.29702 3.32369 3.37826 3.39930 4.08603 4.43080 4.66726 4.95100 5.02575 5.26023 5.30359 5.38202 5.54732 5.64559 5.67027 5.79219 5.88203 5.91173 6.10543 6.18419 6.24811 6.31354 6.40451 6.56505 6.59325 6.78938 6.87128 7.07056 7.32653 7.45187 7.51504 7.54990 7.80347 7.93795 8.08948 8.19039 8.30500 8.45135 9.00881 9.58251 11.06934 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023082 B = 0.007122 C = 0.006482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.781322 B = 3930.427867 C = 4318.711302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.479 5.479 3 C 0.047 3.953 4 C -0.081 4.081 5 C -0.144 4.144 6 C -0.077 4.077 7 C -0.034 4.034 8 C 0.071 3.929 9 H 0.069 0.931 10 C -0.508 4.508 11 H 0.051 0.949 12 C 0.072 3.928 13 N -0.878 5.878 14 Si 0.886 3.114 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.080 3.920 19 N -0.843 5.843 20 C -0.094 4.094 21 C -0.140 4.140 22 C 0.051 3.949 23 H 0.032 0.968 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.261 0.739 32 H 0.042 0.958 33 H 0.008 0.992 34 H 0.317 0.683 35 H 0.348 0.652 36 H 0.116 0.884 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.520 5.937 -3.182 11.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.195 5.195 3 C -0.080 4.080 4 C -0.118 4.118 5 C -0.147 4.147 6 C -0.096 4.096 7 C -0.036 4.036 8 C 0.052 3.948 9 H 0.087 0.913 10 C -0.546 4.546 11 H 0.069 0.931 12 C -0.131 4.131 13 N -0.514 5.514 14 Si 0.714 3.286 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.051 4.051 19 N -0.372 5.372 20 C -0.113 4.113 21 C -0.160 4.160 22 C -0.045 4.045 23 H 0.051 0.949 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.134 0.866 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.027 0.973 34 H 0.127 0.873 35 H 0.162 0.838 36 H 0.134 0.866 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.748 6.396 -3.956 11.537 hybrid contribution -0.543 -1.511 0.047 1.606 sum -9.291 4.886 -3.910 11.202 Atomic orbital electron populations 1.22487 0.87189 1.02506 1.00550 1.60744 1.08123 1.13939 1.36700 1.23195 0.95650 0.88407 1.00724 1.21197 0.97155 0.96312 0.97144 1.20373 0.98561 0.98241 0.97523 1.20358 0.98613 0.96285 0.94301 1.20592 0.92613 0.91288 0.99074 1.17949 0.93195 0.97674 0.85971 0.91307 1.20830 1.02885 0.90867 1.40015 0.93059 1.24931 0.96422 0.96394 0.95392 1.69908 1.10757 1.29379 1.41391 0.86757 0.77873 0.85092 0.78868 1.20333 1.21327 1.20263 1.21791 0.94825 0.96869 0.91591 1.58614 1.39117 1.35449 1.04016 1.20691 0.96010 0.99103 0.95502 1.20279 1.01765 0.96292 0.97696 1.19342 0.97651 0.96750 0.90778 0.94924 0.91474 0.91109 0.92926 0.89570 0.90804 0.90108 0.86644 0.92871 0.93957 0.97332 0.87304 0.83839 0.86613 0.87711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.16 60.06 0.55 0.80 16 2 N -0.48 -7.73 5.31 -176.84 -0.94 -8.67 16 3 C 0.05 0.63 6.91 -2.43 -0.02 0.62 16 4 C -0.08 -1.26 7.04 -26.62 -0.19 -1.44 16 5 C -0.14 -2.84 6.23 -104.04 -0.65 -3.49 16 6 C -0.08 -1.69 9.66 -39.67 -0.38 -2.07 16 7 C -0.03 -0.77 4.77 -104.58 -0.50 -1.27 16 8 C 0.07 1.71 2.18 -92.92 -0.20 1.51 16 9 H 0.07 1.89 7.24 -51.93 -0.38 1.51 16 10 C -0.51 -13.29 7.09 -34.44 -0.24 -13.53 16 11 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16 12 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 13 N -0.88 -25.00 12.91 55.43 0.72 -24.29 16 14 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 C 0.08 1.65 5.94 -3.83 -0.02 1.63 16 19 N -0.84 -16.32 9.57 -10.37 -0.10 -16.42 16 20 C -0.09 -1.99 8.86 -39.68 -0.35 -2.34 16 21 C -0.14 -2.69 9.53 -39.27 -0.37 -3.06 16 22 C 0.05 0.97 5.95 -83.41 -0.50 0.47 16 23 H 0.03 0.41 8.09 -51.93 -0.42 -0.01 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.89 7.31 -51.93 -0.38 0.51 16 26 H 0.05 0.64 7.84 -51.93 -0.41 0.24 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.12 2.58 7.95 -52.48 -0.42 2.16 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.01 0.17 7.59 -51.93 -0.39 -0.22 16 34 H 0.32 5.03 9.08 -39.30 -0.36 4.67 16 35 H 0.35 6.93 8.25 -39.29 -0.32 6.61 16 36 H 0.12 2.35 7.64 -52.49 -0.40 1.94 16 37 H 0.10 1.76 7.37 -52.49 -0.39 1.37 16 LS Contribution 302.62 15.07 4.56 4.56 Total: -1.00 -29.28 302.62 -9.28 -38.56 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.52 Total: 10.34 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -2.97 Total: -20.30 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.32 Total: -49.38 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.28 -9.28 -38.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.082 kcal (2) G-P(sol) polarization free energy of solvation -29.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds