Wall clock time and date at job start Mon Mar 30 2020 04:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47914 * 111.00213 * 2 1 4 4 C 1.54592 * 102.62421 * 149.11092 * 3 2 1 5 5 C 1.51573 * 102.83675 * 334.46875 * 4 3 2 6 6 C 1.37925 * 131.56015 * 196.06915 * 5 4 3 7 7 C 1.38299 * 120.07847 * 179.64540 * 6 5 4 8 8 C 1.50702 * 120.05807 * 180.02562 * 7 6 5 9 9 H 1.09006 * 109.46699 * 0.02562 * 8 7 6 10 10 C 1.50696 * 109.47766 * 240.00309 * 8 7 6 11 11 H 1.07995 * 119.99838 * 266.02210 * 10 8 7 12 12 C 1.37884 * 119.99655 * 86.01453 * 10 8 7 13 13 N 1.31505 * 120.00443 * 5.41123 * 12 10 8 14 14 Si 1.86796 * 119.99545 * 185.41059 * 12 10 8 15 15 H 1.48501 * 109.47613 * 59.99958 * 14 12 10 16 16 H 1.48497 * 109.47071 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47332 * 300.00095 * 14 12 10 18 18 C 1.53001 * 109.47062 * 120.00093 * 8 7 6 19 19 N 1.46895 * 109.47494 * 185.45753 * 18 8 7 20 20 C 1.38298 * 119.88567 * 0.02562 * 7 6 5 21 21 C 1.37913 * 120.26458 * 0.09286 * 20 7 6 22 22 C 1.38958 * 107.95802 * 15.94007 * 5 4 3 23 23 H 1.08998 * 109.47402 * 300.02499 * 1 2 3 24 24 H 1.08997 * 109.47075 * 60.02766 * 1 2 3 25 25 H 1.09007 * 109.46845 * 180.02562 * 1 2 3 26 26 H 1.09003 * 110.77369 * 30.82677 * 3 2 1 27 27 H 1.09000 * 110.77845 * 267.40349 * 3 2 1 28 28 H 1.08997 * 110.73904 * 216.13103 * 4 3 2 29 29 H 1.08999 * 110.89749 * 92.87770 * 4 3 2 30 30 H 1.08004 * 119.96181 * 359.62295 * 6 5 4 31 31 H 0.97001 * 120.00332 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.47119 * 305.45652 * 18 8 7 33 33 H 1.09000 * 109.47028 * 65.45616 * 18 8 7 34 34 H 1.00893 * 111.00294 * 174.16493 * 19 18 8 35 35 H 1.00900 * 110.99824 * 298.12004 * 19 18 8 36 36 H 1.08002 * 119.86896 * 180.12215 * 20 7 6 37 37 H 1.07998 * 119.89735 * 180.27808 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3809 0.0000 4 6 3.3288 1.2323 0.7745 5 6 3.0803 0.0127 1.6394 6 6 3.7401 -0.4716 2.7495 7 6 3.2975 -1.6254 3.3705 8 6 4.0184 -2.1538 4.5837 9 1 4.8566 -1.4989 4.8222 10 6 4.5305 -3.5422 4.2989 11 1 3.9394 -4.4029 4.5749 12 6 5.7536 -3.7135 3.6858 13 7 6.5205 -2.6726 3.4459 14 14 6.3211 -5.4244 3.1959 15 1 5.3528 -6.0111 2.2349 16 1 7.6597 -5.3384 2.5587 17 1 6.4019 -6.2841 4.4041 18 6 3.0538 -2.1996 5.7705 19 7 3.7865 -2.5896 6.9824 20 6 2.1920 -2.2934 2.8760 21 6 1.5301 -1.8146 1.7649 22 6 1.9709 -0.6532 1.1325 23 1 -0.3634 0.5142 0.8897 24 1 -0.3633 0.5134 -0.8902 25 1 -0.3633 -1.0277 0.0005 26 1 1.3206 2.0555 0.5223 27 1 2.1808 1.7253 -1.0181 28 1 3.5165 2.1112 1.3912 29 1 4.1596 1.0578 0.0907 30 1 4.6037 0.0506 3.1342 31 1 7.3808 -2.7931 3.0143 32 1 2.6095 -1.2149 5.9157 33 1 2.2672 -2.9274 5.5715 34 1 3.1934 -2.5352 7.7968 35 1 4.1823 -3.5126 6.8843 36 1 1.8454 -3.1933 3.3623 37 1 0.6648 -2.3385 1.3865 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261087946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:54 Heat of formation + Delta-G solvation = 10.201331 kcal Electronic energy + Delta-G solvation = -17876.319262 eV Core-core repulsion = 15231.081757 eV Total energy + Delta-G solvation = -2645.237506 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.46773 -38.49933 -35.98974 -34.17864 -33.58845 -31.70769 -29.88024 -28.56745 -26.56462 -25.94456 -23.60192 -22.88775 -21.75248 -20.78120 -18.42930 -17.39805 -16.82566 -16.61539 -16.52411 -16.30979 -15.79979 -14.93588 -14.69014 -14.53492 -14.27117 -14.04006 -13.58978 -13.47999 -13.40199 -12.97766 -12.85728 -12.72040 -12.48336 -12.42302 -12.27544 -11.97756 -11.58169 -11.34819 -11.09869 -10.50304 -10.38843 -9.52251 -9.30700 -8.39545 -8.03974 -6.14671 0.66329 0.72683 1.41235 1.43411 1.48889 2.44603 2.83537 3.08126 3.26726 3.75050 3.79808 4.04491 4.19123 4.25463 4.36252 4.49518 4.55826 4.62031 4.66136 4.72083 4.74935 4.82754 4.93928 5.00375 5.03897 5.11357 5.17670 5.28376 5.54388 5.64178 5.76164 5.84195 5.90199 6.13683 6.19128 6.41421 6.47438 6.55821 6.91727 6.99640 7.50178 9.00779 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023082 B = 0.007122 C = 0.006482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.781322 B = 3930.427867 C = 4318.711302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.492 5.492 3 C 0.052 3.948 4 C -0.083 4.083 5 C -0.160 4.160 6 C -0.098 4.098 7 C -0.060 4.060 8 C 0.074 3.926 9 H 0.024 0.976 10 C -0.506 4.506 11 H 0.053 0.947 12 C 0.020 3.980 13 N -0.913 5.913 14 Si 0.943 3.057 15 H -0.277 1.277 16 H -0.291 1.291 17 H -0.266 1.266 18 C 0.089 3.911 19 N -0.850 5.850 20 C -0.103 4.103 21 C -0.142 4.142 22 C 0.056 3.944 23 H 0.036 0.964 24 H 0.095 0.905 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.257 0.743 32 H 0.049 0.951 33 H 0.018 0.982 34 H 0.339 0.661 35 H 0.344 0.656 36 H 0.119 0.881 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.579 6.103 -4.480 13.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.207 5.207 3 C -0.073 4.073 4 C -0.120 4.120 5 C -0.162 4.162 6 C -0.117 4.117 7 C -0.062 4.062 8 C 0.055 3.945 9 H 0.043 0.957 10 C -0.544 4.544 11 H 0.072 0.928 12 C -0.179 4.179 13 N -0.552 5.552 14 Si 0.769 3.231 15 H -0.203 1.203 16 H -0.217 1.217 17 H -0.190 1.190 18 C -0.042 4.042 19 N -0.381 5.381 20 C -0.122 4.122 21 C -0.162 4.162 22 C -0.041 4.041 23 H 0.055 0.945 24 H 0.114 0.886 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.131 0.869 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.137 0.863 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.839 6.567 -5.241 13.714 hybrid contribution 0.019 -1.477 0.417 1.535 sum -10.819 5.090 -4.824 12.893 Atomic orbital electron populations 1.22600 0.84822 1.03248 1.02142 1.60732 1.10266 1.15186 1.34556 1.23328 0.94386 0.87425 1.02196 1.21322 0.98619 0.95149 0.96890 1.20769 0.98552 0.99901 0.97023 1.20307 0.98685 0.96784 0.95888 1.20459 0.94060 0.92544 0.99154 1.17789 0.92763 0.95776 0.88140 0.95730 1.21119 1.02655 0.91895 1.38774 0.92842 1.25640 0.96921 0.99442 0.95920 1.70061 1.11002 1.31156 1.42934 0.85850 0.77032 0.81441 0.78752 1.20268 1.21704 1.19035 1.21624 0.94180 0.97576 0.90847 1.58535 1.39810 1.35198 1.04532 1.20734 0.95789 0.99209 0.96444 1.20523 1.02226 0.96516 0.96967 1.19637 0.97101 0.96418 0.90925 0.94522 0.88642 0.90934 0.90986 0.86865 0.89212 0.90224 0.88747 0.93401 0.93246 0.96400 0.84864 0.84234 0.86286 0.85012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.16 127.69 1.17 1.56 16 2 N -0.49 -14.25 5.31 -713.41 -3.79 -18.04 16 3 C 0.05 1.23 6.91 86.65 0.60 1.83 16 4 C -0.08 -2.43 7.04 30.67 0.22 -2.21 16 5 C -0.16 -6.23 6.23 -19.49 -0.12 -6.35 16 6 C -0.10 -4.47 9.66 22.21 0.21 -4.26 16 7 C -0.06 -2.82 4.77 -19.83 -0.09 -2.92 16 8 C 0.07 3.71 2.18 -12.29 -0.03 3.68 16 9 H 0.02 1.42 7.24 -2.38 -0.02 1.40 16 10 C -0.51 -26.97 7.09 25.60 0.18 -26.79 16 11 H 0.05 2.76 7.82 -2.91 -0.02 2.74 16 12 C 0.02 1.14 5.45 84.66 0.46 1.60 16 13 N -0.91 -54.04 12.91 21.45 0.28 -53.76 16 14 Si 0.94 44.13 29.54 68.60 2.03 46.16 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 18 C 0.09 3.68 5.94 86.30 0.51 4.20 16 19 N -0.85 -32.83 9.57 -186.73 -1.79 -34.62 16 20 C -0.10 -4.32 8.86 22.21 0.20 -4.12 16 21 C -0.14 -5.23 9.53 22.47 0.21 -5.02 16 22 C 0.06 2.04 5.95 38.28 0.23 2.27 16 23 H 0.04 0.78 8.09 -2.39 -0.02 0.76 16 24 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.07 1.55 7.31 -2.38 -0.02 1.53 16 26 H 0.07 1.45 7.84 -2.39 -0.02 1.43 16 27 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.09 4.56 7.95 -2.91 -0.02 4.53 16 31 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.02 0.71 7.59 -2.39 -0.02 0.69 16 34 H 0.34 10.42 9.08 -89.70 -0.81 9.61 16 35 H 0.34 13.74 8.25 -89.69 -0.74 13.00 16 36 H 0.12 4.78 7.64 -2.91 -0.02 4.75 16 37 H 0.13 4.06 7.37 -2.91 -0.02 4.04 16 Total: -1.00 -64.39 302.62 0.00 -64.39 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: -0.48 Total: 32.39 kcal Atomic # 6 Polarization: -40.27 SS G_CDS: 3.75 Total: -36.52 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -5.30 Total: -106.42 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -64.39 0.00 -64.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.591 kcal (2) G-P(sol) polarization free energy of solvation -64.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds