Wall clock time and date at job start Mon Mar 30 2020 04:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47934 * 110.99030 * 2 1 4 4 C 1.54600 * 102.61007 * 149.20488 * 3 2 1 5 5 C 1.51567 * 102.84621 * 334.48656 * 4 3 2 6 6 C 1.37928 * 131.55975 * 196.10682 * 5 4 3 7 7 C 1.38298 * 120.08211 * 179.35730 * 6 5 4 8 8 C 1.50700 * 120.05493 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.47256 * 0.02562 * 8 7 6 10 10 C 1.50702 * 109.46816 * 120.00256 * 8 7 6 11 11 H 1.07998 * 120.00332 * 5.44143 * 10 8 7 12 12 C 1.37884 * 119.99535 * 185.43893 * 10 8 7 13 13 N 1.31505 * 120.00059 * 9.45045 * 12 10 8 14 14 Si 1.86805 * 119.99465 * 189.44512 * 12 10 8 15 15 H 1.48502 * 109.46870 * 84.99787 * 14 12 10 16 16 H 1.48505 * 109.46726 * 204.99462 * 14 12 10 17 17 H 1.48494 * 109.47364 * 324.99789 * 14 12 10 18 18 C 1.53002 * 109.47052 * 239.99889 * 8 7 6 19 19 N 1.46898 * 109.46760 * 63.60360 * 18 8 7 20 20 C 1.38302 * 119.88353 * 359.97438 * 7 6 5 21 21 C 1.37908 * 120.26721 * 0.15912 * 20 7 6 22 22 C 1.38961 * 107.96460 * 15.78779 * 5 4 3 23 23 H 1.09004 * 109.47463 * 300.06757 * 1 2 3 24 24 H 1.09004 * 109.47610 * 60.06542 * 1 2 3 25 25 H 1.08998 * 109.47102 * 180.02562 * 1 2 3 26 26 H 1.08997 * 110.80740 * 30.91321 * 3 2 1 27 27 H 1.09005 * 110.92437 * 267.54705 * 3 2 1 28 28 H 1.08999 * 110.73509 * 216.14873 * 4 3 2 29 29 H 1.08996 * 110.89567 * 92.90420 * 4 3 2 30 30 H 1.07998 * 119.95415 * 359.63538 * 6 5 4 31 31 H 0.97001 * 119.99956 * 179.97438 * 13 12 10 32 32 H 1.08994 * 109.47262 * 183.60385 * 18 8 7 33 33 H 1.09006 * 109.46873 * 303.60796 * 18 8 7 34 34 H 1.00904 * 110.99471 * 180.02562 * 19 18 8 35 35 H 1.00893 * 111.00520 * 303.95069 * 19 18 8 36 36 H 1.08008 * 119.86945 * 180.13905 * 20 7 6 37 37 H 1.08004 * 119.90429 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9988 1.3812 0.0000 4 6 3.3297 1.2321 0.7724 5 6 3.0829 0.0116 1.6366 6 6 3.7442 -0.4732 2.7457 7 6 3.2994 -1.6244 3.3698 8 6 4.0228 -2.1539 4.5812 9 1 4.8642 -1.5019 4.8157 10 6 3.0767 -2.1938 5.7535 11 1 2.0333 -1.9524 5.6139 12 6 3.5432 -2.5384 7.0044 13 7 4.8363 -2.6508 7.2160 14 14 2.3384 -2.8457 8.3985 15 1 1.8658 -4.2524 8.3433 16 1 3.0129 -2.6007 9.6986 17 1 1.1787 -1.9283 8.2618 18 6 4.5362 -3.5658 4.2919 19 7 5.5236 -3.5147 3.2055 20 6 2.1897 -2.2889 2.8802 21 6 1.5265 -1.8100 1.7699 22 6 1.9709 -0.6523 1.1330 23 1 -0.3634 0.5149 0.8894 24 1 -0.3634 0.5128 -0.8906 25 1 -0.3633 -1.0276 0.0005 26 1 1.3214 2.0558 0.5234 27 1 2.1790 1.7290 -1.0172 28 1 3.5181 2.1104 1.3898 29 1 4.1595 1.0585 0.0873 30 1 4.6077 0.0494 3.1298 31 1 5.1645 -2.8929 8.0961 32 1 5.0032 -3.9734 5.1884 33 1 3.7023 -4.2020 3.9953 34 1 5.8778 -4.4359 2.9952 35 1 5.1334 -3.0812 2.3822 36 1 1.8412 -3.1867 3.3691 37 1 0.6607 -2.3337 1.3923 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261087948.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:56 Heat of formation + Delta-G solvation = 29.610562 kcal Electronic energy + Delta-G solvation = -17822.852464 eV Core-core repulsion = 15178.456606 eV Total energy + Delta-G solvation = -2644.395858 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.28255 -37.15362 -34.33618 -32.44761 -32.21162 -30.11619 -28.65024 -27.19747 -25.35654 -23.79662 -22.44620 -21.56575 -20.57476 -18.97896 -16.47143 -16.20265 -15.67244 -15.31356 -15.00196 -14.44768 -14.13734 -13.68492 -13.32970 -13.28384 -12.91064 -12.43994 -12.37352 -12.06806 -11.80507 -11.64470 -11.40836 -11.28020 -11.02144 -10.79962 -10.59923 -10.41138 -10.06604 -9.53073 -9.38630 -9.03220 -8.43849 -8.17271 -7.64666 -7.09884 -6.04588 -4.08612 2.00384 2.05507 3.28978 3.36044 3.38786 3.92312 4.36793 4.49944 4.80454 4.87101 5.18295 5.23001 5.24706 5.45917 5.51500 5.64707 5.72750 5.74078 5.79510 5.91701 6.00526 6.03677 6.21696 6.34214 6.52071 6.66798 6.79459 6.87202 7.10639 7.16600 7.31843 7.34559 7.58102 7.77327 7.88388 7.93927 8.15909 8.33597 8.44930 8.95909 9.54711 11.02638 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027819 B = 0.006285 C = 0.005821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.259383 B = 4453.817156 C = 4809.420326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.479 5.479 3 C 0.046 3.954 4 C -0.081 4.081 5 C -0.142 4.142 6 C -0.086 4.086 7 C -0.046 4.046 8 C 0.083 3.917 9 H 0.050 0.950 10 C -0.514 4.514 11 H 0.058 0.942 12 C 0.066 3.934 13 N -0.881 5.881 14 Si 0.888 3.112 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.077 3.923 19 N -0.853 5.853 20 C -0.095 4.095 21 C -0.137 4.137 22 C 0.057 3.943 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.262 0.738 32 H 0.085 0.915 33 H 0.001 0.999 34 H 0.320 0.680 35 H 0.325 0.675 36 H 0.122 0.878 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.300 4.395 -12.250 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.195 5.195 3 C -0.081 4.081 4 C -0.119 4.119 5 C -0.145 4.145 6 C -0.104 4.104 7 C -0.047 4.047 8 C 0.064 3.936 9 H 0.068 0.932 10 C -0.553 4.553 11 H 0.076 0.924 12 C -0.137 4.137 13 N -0.518 5.518 14 Si 0.716 3.284 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.053 4.053 19 N -0.380 5.380 20 C -0.114 4.114 21 C -0.157 4.157 22 C -0.039 4.039 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.134 0.866 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.019 0.981 34 H 0.130 0.870 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.637 4.600 -12.115 13.763 hybrid contribution -1.650 -0.503 0.909 1.949 sum -6.287 4.097 -11.206 13.487 Atomic orbital electron populations 1.22506 0.86881 1.02662 1.00827 1.60734 1.08382 1.14046 1.36325 1.23213 0.95624 0.88374 1.00863 1.21215 0.97243 0.96307 0.97107 1.20369 0.98487 0.98137 0.97494 1.20401 0.99510 0.96511 0.94013 1.20492 0.94610 0.93304 0.96319 1.17856 0.94998 0.92465 0.88293 0.93195 1.21063 0.94907 1.47236 0.92066 0.92386 1.24985 0.94990 0.95338 0.98396 1.69990 1.11973 1.47070 1.22781 0.86672 0.81415 0.78740 0.81609 1.20552 1.21257 1.19968 1.21991 0.91170 0.98932 0.93242 1.58940 1.42101 1.25106 1.11845 1.20836 0.95474 1.00211 0.94883 1.20353 1.01505 0.96364 0.97518 1.19401 0.97311 0.96571 0.90633 0.94681 0.91304 0.91014 0.92742 0.89387 0.90575 0.89998 0.86560 0.92848 0.89643 0.98052 0.86974 0.86342 0.85972 0.87368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.16 60.06 0.55 0.77 16 2 N -0.48 -6.91 5.31 -176.83 -0.94 -7.85 16 3 C 0.05 0.55 6.91 -2.41 -0.02 0.54 16 4 C -0.08 -1.10 7.03 -26.62 -0.19 -1.29 16 5 C -0.14 -2.48 6.23 -104.04 -0.65 -3.12 16 6 C -0.09 -1.68 9.66 -39.67 -0.38 -2.07 16 7 C -0.05 -0.99 3.72 -104.58 -0.39 -1.38 16 8 C 0.08 2.03 2.04 -92.92 -0.19 1.84 16 9 H 0.05 1.38 7.82 -51.93 -0.41 0.97 16 10 C -0.51 -13.79 8.19 -34.44 -0.28 -14.07 16 11 H 0.06 1.56 7.55 -52.49 -0.40 1.16 16 12 C 0.07 1.78 5.17 -17.82 -0.09 1.69 16 13 N -0.88 -24.94 12.16 55.43 0.67 -24.27 16 14 Si 0.89 20.97 29.55 -169.99 -5.02 15.94 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 C 0.08 1.77 6.01 -3.82 -0.02 1.75 16 19 N -0.85 -17.07 9.62 -10.37 -0.10 -17.17 16 20 C -0.10 -1.88 8.60 -39.68 -0.34 -2.22 16 21 C -0.14 -2.40 9.53 -39.27 -0.37 -2.77 16 22 C 0.06 0.98 5.95 -83.41 -0.50 0.48 16 23 H 0.03 0.42 8.09 -51.93 -0.42 0.00 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.82 7.31 -51.93 -0.38 0.44 16 26 H 0.05 0.62 7.84 -51.93 -0.41 0.21 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.12 2.25 7.95 -52.49 -0.42 1.83 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 32 H 0.09 2.23 6.83 -51.93 -0.35 1.87 16 33 H 0.00 0.03 7.27 -51.93 -0.38 -0.35 16 34 H 0.32 5.59 9.08 -39.29 -0.36 5.23 16 35 H 0.33 6.22 8.01 -39.30 -0.31 5.91 16 36 H 0.12 2.41 7.55 -52.48 -0.40 2.02 16 37 H 0.11 1.66 7.37 -52.48 -0.39 1.27 16 LS Contribution 299.72 15.07 4.52 4.52 Total: -1.00 -28.90 299.72 -9.18 -38.08 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -5.44 Total: 10.60 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -2.87 Total: -19.85 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.37 Total: -49.29 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.90 -9.18 -38.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087948.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.690 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds