Wall clock time and date at job start Mon Mar 30 2020 04:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47934 * 110.99030 * 2 1 4 4 C 1.54600 * 102.61007 * 149.20488 * 3 2 1 5 5 C 1.51567 * 102.84621 * 334.48656 * 4 3 2 6 6 C 1.37928 * 131.55975 * 196.10682 * 5 4 3 7 7 C 1.38298 * 120.08211 * 179.35730 * 6 5 4 8 8 C 1.50700 * 120.05493 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.47256 * 0.02562 * 8 7 6 10 10 C 1.50702 * 109.46816 * 120.00256 * 8 7 6 11 11 H 1.07998 * 120.00332 * 5.44143 * 10 8 7 12 12 C 1.37884 * 119.99535 * 185.43893 * 10 8 7 13 13 N 1.31505 * 120.00059 * 9.45045 * 12 10 8 14 14 Si 1.86805 * 119.99465 * 189.44512 * 12 10 8 15 15 H 1.48502 * 109.46870 * 84.99787 * 14 12 10 16 16 H 1.48505 * 109.46726 * 204.99462 * 14 12 10 17 17 H 1.48494 * 109.47364 * 324.99789 * 14 12 10 18 18 C 1.53002 * 109.47052 * 239.99889 * 8 7 6 19 19 N 1.46898 * 109.46760 * 63.60360 * 18 8 7 20 20 C 1.38302 * 119.88353 * 359.97438 * 7 6 5 21 21 C 1.37908 * 120.26721 * 0.15912 * 20 7 6 22 22 C 1.38961 * 107.96460 * 15.78779 * 5 4 3 23 23 H 1.09004 * 109.47463 * 300.06757 * 1 2 3 24 24 H 1.09004 * 109.47610 * 60.06542 * 1 2 3 25 25 H 1.08998 * 109.47102 * 180.02562 * 1 2 3 26 26 H 1.08997 * 110.80740 * 30.91321 * 3 2 1 27 27 H 1.09005 * 110.92437 * 267.54705 * 3 2 1 28 28 H 1.08999 * 110.73509 * 216.14873 * 4 3 2 29 29 H 1.08996 * 110.89567 * 92.90420 * 4 3 2 30 30 H 1.07998 * 119.95415 * 359.63538 * 6 5 4 31 31 H 0.97001 * 119.99956 * 179.97438 * 13 12 10 32 32 H 1.08994 * 109.47262 * 183.60385 * 18 8 7 33 33 H 1.09006 * 109.46873 * 303.60796 * 18 8 7 34 34 H 1.00904 * 110.99471 * 180.02562 * 19 18 8 35 35 H 1.00893 * 111.00520 * 303.95069 * 19 18 8 36 36 H 1.08008 * 119.86945 * 180.13905 * 20 7 6 37 37 H 1.08004 * 119.90429 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9988 1.3812 0.0000 4 6 3.3297 1.2321 0.7724 5 6 3.0829 0.0116 1.6366 6 6 3.7442 -0.4732 2.7457 7 6 3.2994 -1.6244 3.3698 8 6 4.0228 -2.1539 4.5812 9 1 4.8642 -1.5019 4.8157 10 6 3.0767 -2.1938 5.7535 11 1 2.0333 -1.9524 5.6139 12 6 3.5432 -2.5384 7.0044 13 7 4.8363 -2.6508 7.2160 14 14 2.3384 -2.8457 8.3985 15 1 1.8658 -4.2524 8.3433 16 1 3.0129 -2.6007 9.6986 17 1 1.1787 -1.9283 8.2618 18 6 4.5362 -3.5658 4.2919 19 7 5.5236 -3.5147 3.2055 20 6 2.1897 -2.2889 2.8802 21 6 1.5265 -1.8100 1.7699 22 6 1.9709 -0.6523 1.1330 23 1 -0.3634 0.5149 0.8894 24 1 -0.3634 0.5128 -0.8906 25 1 -0.3633 -1.0276 0.0005 26 1 1.3214 2.0558 0.5234 27 1 2.1790 1.7290 -1.0172 28 1 3.5181 2.1104 1.3898 29 1 4.1595 1.0585 0.0873 30 1 4.6077 0.0494 3.1298 31 1 5.1645 -2.8929 8.0961 32 1 5.0032 -3.9734 5.1884 33 1 3.7023 -4.2020 3.9953 34 1 5.8778 -4.4359 2.9952 35 1 5.1334 -3.0812 2.3822 36 1 1.8412 -3.1867 3.3691 37 1 0.6607 -2.3337 1.3923 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261087948.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:56 Heat of formation + Delta-G solvation = 10.521745 kcal Electronic energy + Delta-G solvation = -17823.680217 eV Core-core repulsion = 15178.456606 eV Total energy + Delta-G solvation = -2645.223611 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.55135 -38.66263 -35.99424 -34.18948 -33.63289 -31.73111 -29.97008 -28.78519 -26.53028 -25.70913 -23.72833 -23.17859 -21.80975 -20.62649 -18.42242 -17.45753 -17.01257 -16.82374 -16.47870 -16.11107 -15.81925 -15.12563 -14.85972 -14.53907 -14.12993 -14.04656 -13.64899 -13.56059 -13.39065 -12.96015 -12.87004 -12.71412 -12.45054 -12.40073 -12.26441 -12.20223 -11.59646 -11.33024 -11.18823 -10.53793 -10.48763 -9.60960 -9.36775 -8.47296 -8.10084 -6.23424 0.56889 0.60901 1.40881 1.41877 1.51246 2.42048 2.75774 3.05016 3.15760 3.70076 3.78130 4.05015 4.14292 4.21281 4.32655 4.38865 4.51150 4.58364 4.63518 4.71693 4.79749 4.83820 4.92298 4.94221 5.05203 5.08464 5.21483 5.40887 5.48657 5.61160 5.67912 5.81659 5.89089 6.08740 6.14811 6.24349 6.40968 6.54780 6.76059 6.90912 7.43380 8.94207 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027819 B = 0.006285 C = 0.005821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.259383 B = 4453.817156 C = 4809.420326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.487 5.487 3 C 0.048 3.952 4 C -0.082 4.082 5 C -0.149 4.149 6 C -0.099 4.099 7 C -0.071 4.071 8 C 0.089 3.911 9 H 0.007 0.993 10 C -0.527 4.527 11 H 0.052 0.948 12 C 0.018 3.982 13 N -0.912 5.912 14 Si 0.950 3.050 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.271 1.271 18 C 0.091 3.909 19 N -0.851 5.851 20 C -0.104 4.104 21 C -0.136 4.136 22 C 0.064 3.936 23 H 0.032 0.968 24 H 0.096 0.904 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.117 0.883 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.262 0.738 32 H 0.052 0.948 33 H 0.006 0.994 34 H 0.337 0.663 35 H 0.334 0.666 36 H 0.114 0.886 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.031 5.248 -14.264 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.202 5.202 3 C -0.077 4.077 4 C -0.119 4.119 5 C -0.152 4.152 6 C -0.118 4.118 7 C -0.072 4.072 8 C 0.070 3.930 9 H 0.025 0.975 10 C -0.566 4.566 11 H 0.070 0.930 12 C -0.181 4.181 13 N -0.551 5.551 14 Si 0.776 3.224 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.196 1.196 18 C -0.039 4.039 19 N -0.380 5.380 20 C -0.123 4.123 21 C -0.157 4.157 22 C -0.034 4.034 23 H 0.050 0.950 24 H 0.115 0.885 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.136 0.864 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.024 0.976 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.132 0.868 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.378 5.458 -14.158 16.459 hybrid contribution -1.117 -0.700 1.398 1.922 sum -7.495 4.758 -12.759 15.544 Atomic orbital electron populations 1.22614 0.85022 1.03326 1.02077 1.60735 1.10029 1.15215 1.34197 1.23374 0.94611 0.87256 1.02506 1.21353 0.98729 0.94875 0.96924 1.20737 0.98130 0.99554 0.96805 1.20358 0.99828 0.96314 0.95270 1.20167 0.95915 0.94900 0.96195 1.17604 0.93490 0.92382 0.89524 0.97529 1.21356 0.94992 1.46927 0.93278 0.92975 1.25730 0.96474 0.95139 1.00797 1.70116 1.13655 1.48041 1.23278 0.85691 0.79282 0.78858 0.78592 1.19695 1.20984 1.19566 1.21620 0.91429 0.98025 0.92875 1.58772 1.41219 1.26454 1.11556 1.20754 0.95402 1.00149 0.95964 1.20509 1.01826 0.96695 0.96667 1.19671 0.96838 0.96097 0.90749 0.94968 0.88499 0.90789 0.91629 0.86449 0.89381 0.88817 0.87522 0.92896 0.92948 0.97634 0.85094 0.85395 0.86767 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.16 127.69 1.17 1.48 16 2 N -0.49 -12.24 5.31 -713.35 -3.79 -16.03 16 3 C 0.05 0.97 6.91 86.65 0.60 1.57 16 4 C -0.08 -1.97 7.03 30.67 0.22 -1.76 16 5 C -0.15 -5.00 6.23 -19.49 -0.12 -5.13 16 6 C -0.10 -3.96 9.66 22.21 0.21 -3.75 16 7 C -0.07 -3.10 3.72 -19.83 -0.07 -3.17 16 8 C 0.09 4.57 2.04 -12.28 -0.03 4.55 16 9 H 0.01 0.38 7.82 -2.39 -0.02 0.37 16 10 C -0.53 -29.26 8.19 25.60 0.21 -29.05 16 11 H 0.05 2.88 7.55 -2.91 -0.02 2.86 16 12 C 0.02 1.02 5.17 84.66 0.44 1.46 16 13 N -0.91 -53.55 12.16 21.45 0.26 -53.29 16 14 Si 0.95 43.74 29.55 68.60 2.03 45.77 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 C 0.09 4.38 6.01 86.30 0.52 4.90 16 19 N -0.85 -34.71 9.62 -186.72 -1.80 -36.50 16 20 C -0.10 -4.11 8.60 22.21 0.19 -3.92 16 21 C -0.14 -4.57 9.53 22.47 0.21 -4.36 16 22 C 0.06 2.04 5.95 38.28 0.23 2.26 16 23 H 0.03 0.66 8.09 -2.38 -0.02 0.65 16 24 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 25 H 0.07 1.43 7.31 -2.39 -0.02 1.41 16 26 H 0.07 1.21 7.84 -2.39 -0.02 1.19 16 27 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 30 H 0.11 4.33 7.95 -2.91 -0.02 4.31 16 31 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.05 2.85 6.83 -2.39 -0.02 2.84 16 33 H 0.01 0.26 7.27 -2.38 -0.02 0.24 16 34 H 0.34 11.77 9.08 -89.69 -0.81 10.95 16 35 H 0.33 12.88 8.01 -89.70 -0.72 12.16 16 36 H 0.11 4.59 7.55 -2.91 -0.02 4.57 16 37 H 0.13 3.72 7.37 -2.91 -0.02 3.70 16 Total: -1.00 -63.90 299.72 0.02 -63.87 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: -0.46 Total: 31.10 kcal Atomic # 6 Polarization: -38.69 SS G_CDS: 3.78 Total: -34.91 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -5.32 Total: -105.83 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -63.90 0.02 -63.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087948.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.394 kcal (2) G-P(sol) polarization free energy of solvation -63.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds