Wall clock time and date at job start Mon Mar 30 2020 04:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48052 * 111.00441 * 2 1 4 4 C 1.51171 * 105.67723 * 146.96454 * 3 2 1 5 5 C 1.38184 * 131.78026 * 162.50079 * 4 3 2 6 6 C 1.38220 * 120.03211 * 179.97438 * 5 4 3 7 7 C 1.38258 * 120.00112 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99939 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47316 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47252 * 300.02683 * 8 7 6 11 11 H 1.08001 * 120.00109 * 5.43701 * 10 8 7 12 12 C 1.37881 * 120.00161 * 185.44478 * 10 8 7 13 13 N 1.31510 * 119.99720 * 9.43928 * 12 10 8 14 14 Si 1.86802 * 119.99966 * 189.44713 * 12 10 8 15 15 H 1.48498 * 109.47081 * 84.98909 * 14 12 10 16 16 H 1.48502 * 109.46712 * 204.99174 * 14 12 10 17 17 H 1.48501 * 109.46859 * 324.98931 * 14 12 10 18 18 C 1.53005 * 109.46917 * 60.02011 * 8 7 6 19 19 N 1.46903 * 109.46829 * 63.60612 * 18 8 7 20 20 C 1.38219 * 120.00232 * 0.02562 * 7 6 5 21 21 C 1.38178 * 120.03205 * 359.97438 * 20 7 6 22 22 C 1.48054 * 111.00350 * 115.00859 * 2 1 3 23 23 H 1.09004 * 109.47045 * 59.87508 * 1 2 3 24 24 H 1.08997 * 109.47322 * 299.86968 * 1 2 3 25 25 H 1.09002 * 109.47660 * 179.87224 * 1 2 3 26 26 H 1.09002 * 110.21139 * 266.02174 * 3 2 1 27 27 H 1.09005 * 110.20381 * 27.83542 * 3 2 1 28 28 H 1.08001 * 119.98369 * 359.97438 * 5 4 3 29 29 H 1.07998 * 120.00086 * 179.97438 * 6 5 4 30 30 H 0.97006 * 120.00038 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.47052 * 183.59869 * 18 8 7 32 32 H 1.08999 * 109.47247 * 303.60417 * 18 8 7 33 33 H 1.00894 * 111.00384 * 179.97438 * 19 18 8 34 34 H 1.00902 * 110.99749 * 303.94943 * 19 18 8 35 35 H 1.07999 * 119.98552 * 180.02562 * 20 7 6 36 36 H 1.09010 * 110.20144 * 332.08596 * 22 2 1 37 37 H 1.08995 * 110.21062 * 93.97861 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9996 1.3821 0.0000 4 6 3.2851 1.3261 0.7935 5 6 4.3571 2.1946 0.8722 6 6 5.4286 1.8982 1.6934 7 6 5.4286 0.7321 2.4361 8 6 6.5973 0.4087 3.3310 9 1 6.4191 -0.5430 3.8316 10 6 7.8528 0.3135 2.5030 11 1 7.8257 0.5571 1.4511 12 6 9.0360 -0.0847 3.0882 13 7 9.0361 -0.5580 4.3152 14 14 10.6390 0.0482 2.1382 15 1 11.1910 1.4186 2.2881 16 1 11.6128 -0.9388 2.6700 17 1 10.3872 -0.2296 0.7013 18 6 6.7592 1.5131 4.3775 19 7 5.5704 1.5485 5.2399 20 6 4.3573 -0.1376 2.3571 21 6 3.2856 0.1579 1.5364 22 6 1.9996 -0.5843 1.2526 23 1 -0.3633 0.5158 -0.8889 24 1 -0.3634 0.5118 0.8911 25 1 -0.3634 -1.0276 -0.0023 26 1 2.2008 1.7083 -1.0204 27 1 1.2900 2.0578 0.4777 28 1 4.3575 3.1054 0.2918 29 1 6.2663 2.5771 1.7542 30 1 9.8686 -0.8378 4.7270 31 1 7.6422 1.3122 4.9841 32 1 6.8734 2.4744 3.8766 33 1 5.6531 2.2700 5.9403 34 1 4.7308 1.6691 4.6935 35 1 4.3574 -1.0483 2.9377 36 1 1.2906 -0.4358 2.0672 37 1 2.2008 -1.6469 1.1167 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261096262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:56 Heat of formation + Delta-G solvation = 31.631612 kcal Electronic energy + Delta-G solvation = -17664.174531 eV Core-core repulsion = 15019.866312 eV Total energy + Delta-G solvation = -2644.308219 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.02516 -37.27707 -34.70802 -32.24755 -31.13695 -30.99334 -28.45575 -27.07302 -25.68384 -23.80048 -22.05567 -21.56580 -20.89584 -19.00204 -16.46981 -15.80602 -15.62580 -15.24334 -15.05379 -14.52344 -14.25141 -13.69592 -13.56218 -13.26655 -12.87716 -12.71513 -12.44029 -12.15320 -11.97070 -11.48149 -11.47108 -11.16334 -11.02930 -10.79087 -10.60529 -10.34905 -10.11471 -9.43460 -9.30220 -8.73171 -8.46006 -8.16061 -7.72229 -7.59726 -6.06834 -4.10757 1.94471 2.01566 3.28881 3.35955 3.39250 4.02369 4.30971 4.45937 4.70302 4.81437 5.21450 5.22470 5.27814 5.44487 5.51761 5.57763 5.67164 5.69132 5.72728 5.82470 5.96502 6.18862 6.24655 6.46869 6.57431 6.61889 6.74083 6.82527 6.98254 7.06574 7.14244 7.26763 7.52727 7.66709 7.84270 7.89173 8.11477 8.28033 8.40408 8.93639 9.52854 11.00746 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031279 B = 0.005744 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.959768 B = 4873.220172 C = 5151.020728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.512 5.512 3 C 0.083 3.917 4 C -0.137 4.137 5 C -0.104 4.104 6 C -0.115 4.115 7 C -0.025 4.025 8 C 0.080 3.920 9 H 0.051 0.949 10 C -0.515 4.515 11 H 0.059 0.941 12 C 0.066 3.934 13 N -0.881 5.881 14 Si 0.889 3.111 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.076 3.924 19 N -0.853 5.853 20 C -0.102 4.102 21 C -0.109 4.109 22 C 0.079 3.921 23 H 0.069 0.931 24 H 0.029 0.971 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.052 0.948 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.262 0.738 31 H 0.086 0.914 32 H 0.002 0.998 33 H 0.321 0.679 34 H 0.324 0.676 35 H 0.117 0.883 36 H 0.056 0.944 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.179 4.221 -4.673 14.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.235 5.235 3 C -0.044 4.044 4 C -0.137 4.137 5 C -0.122 4.122 6 C -0.133 4.133 7 C -0.025 4.025 8 C 0.061 3.939 9 H 0.069 0.931 10 C -0.553 4.553 11 H 0.077 0.923 12 C -0.137 4.137 13 N -0.518 5.518 14 Si 0.717 3.283 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.054 4.054 19 N -0.380 5.380 20 C -0.120 4.120 21 C -0.109 4.109 22 C -0.048 4.048 23 H 0.088 0.912 24 H 0.048 0.952 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.070 0.930 28 H 0.128 0.872 29 H 0.140 0.860 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.020 0.980 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.074 0.926 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.705 3.075 -4.819 13.932 hybrid contribution 0.556 1.496 -0.185 1.607 sum -12.149 4.572 -5.004 13.912 Atomic orbital electron populations 1.22585 0.87697 1.02322 1.00821 1.65187 1.08123 1.15393 1.34748 1.21504 0.93164 0.89915 0.99851 1.20226 0.96258 0.96715 1.00540 1.20357 0.93225 0.98770 0.99860 1.21015 0.97428 0.98108 0.96779 1.20567 0.94821 0.91980 0.95134 1.17915 0.89540 0.95732 0.90699 0.93070 1.21043 0.92402 1.46328 0.95576 0.92289 1.24980 0.99088 0.94460 0.95128 1.69994 1.27050 1.40972 1.13791 0.86649 0.83448 0.77884 0.80344 1.20549 1.21238 1.19870 1.22002 0.92233 0.96399 0.94739 1.58929 1.05654 1.54268 1.19151 1.20468 0.92407 1.00099 0.99032 1.20367 0.95795 0.96270 0.98511 1.21582 0.93218 0.99659 0.90372 0.91189 0.95218 0.91027 0.89894 0.92984 0.87184 0.85953 0.92815 0.89526 0.97970 0.86902 0.86469 0.86492 0.92613 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.35 60.06 0.56 0.71 16 2 N -0.51 -6.92 5.76 -243.21 -1.40 -8.32 16 3 C 0.08 1.13 6.61 -4.11 -0.03 1.10 16 4 C -0.14 -2.27 6.26 -104.34 -0.65 -2.92 16 5 C -0.10 -1.76 10.04 -39.61 -0.40 -2.15 16 6 C -0.12 -2.24 8.62 -39.58 -0.34 -2.58 16 7 C -0.02 -0.53 3.72 -104.62 -0.39 -0.91 16 8 C 0.08 1.95 2.03 -92.92 -0.19 1.76 16 9 H 0.05 1.41 7.82 -51.93 -0.41 1.00 16 10 C -0.52 -13.78 8.19 -34.44 -0.28 -14.06 16 11 H 0.06 1.59 7.55 -52.49 -0.40 1.19 16 12 C 0.07 1.80 5.17 -17.82 -0.09 1.70 16 13 N -0.88 -24.84 12.16 55.43 0.67 -24.17 16 14 Si 0.89 20.96 29.55 -169.99 -5.02 15.93 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.08 1.74 6.01 -3.82 -0.02 1.72 16 19 N -0.85 -16.72 9.62 -10.37 -0.10 -16.82 16 20 C -0.10 -1.98 9.67 -39.61 -0.38 -2.36 16 21 C -0.11 -1.89 6.26 -104.34 -0.65 -2.54 16 22 C 0.08 1.13 6.61 -4.11 -0.03 1.10 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.03 0.28 7.91 -51.93 -0.41 -0.13 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.05 0.63 7.77 -51.93 -0.40 0.23 16 28 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.12 2.38 7.55 -52.49 -0.40 1.99 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.09 2.23 6.83 -51.93 -0.35 1.88 16 32 H 0.00 0.05 7.27 -51.93 -0.38 -0.33 16 33 H 0.32 5.47 9.08 -39.30 -0.36 5.11 16 34 H 0.32 6.02 8.01 -39.29 -0.31 5.70 16 35 H 0.12 2.24 7.95 -52.49 -0.42 1.83 16 36 H 0.06 0.72 7.69 -51.92 -0.40 0.32 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 301.31 15.07 4.54 4.54 Total: -1.00 -28.57 301.31 -9.69 -38.26 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -5.48 Total: 10.02 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -2.90 Total: -19.44 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.83 Total: -49.31 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.57 -9.69 -38.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.892 kcal (2) G-P(sol) polarization free energy of solvation -28.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds