Wall clock time and date at job start Mon Mar 30 2020 04:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48052 * 111.00441 * 2 1 4 4 C 1.51171 * 105.67723 * 146.96454 * 3 2 1 5 5 C 1.38184 * 131.78026 * 162.50079 * 4 3 2 6 6 C 1.38220 * 120.03211 * 179.97438 * 5 4 3 7 7 C 1.38258 * 120.00112 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99939 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47316 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47252 * 300.02683 * 8 7 6 11 11 H 1.08001 * 120.00109 * 5.43701 * 10 8 7 12 12 C 1.37881 * 120.00161 * 185.44478 * 10 8 7 13 13 N 1.31510 * 119.99720 * 9.43928 * 12 10 8 14 14 Si 1.86802 * 119.99966 * 189.44713 * 12 10 8 15 15 H 1.48498 * 109.47081 * 84.98909 * 14 12 10 16 16 H 1.48502 * 109.46712 * 204.99174 * 14 12 10 17 17 H 1.48501 * 109.46859 * 324.98931 * 14 12 10 18 18 C 1.53005 * 109.46917 * 60.02011 * 8 7 6 19 19 N 1.46903 * 109.46829 * 63.60612 * 18 8 7 20 20 C 1.38219 * 120.00232 * 0.02562 * 7 6 5 21 21 C 1.38178 * 120.03205 * 359.97438 * 20 7 6 22 22 C 1.48054 * 111.00350 * 115.00859 * 2 1 3 23 23 H 1.09004 * 109.47045 * 59.87508 * 1 2 3 24 24 H 1.08997 * 109.47322 * 299.86968 * 1 2 3 25 25 H 1.09002 * 109.47660 * 179.87224 * 1 2 3 26 26 H 1.09002 * 110.21139 * 266.02174 * 3 2 1 27 27 H 1.09005 * 110.20381 * 27.83542 * 3 2 1 28 28 H 1.08001 * 119.98369 * 359.97438 * 5 4 3 29 29 H 1.07998 * 120.00086 * 179.97438 * 6 5 4 30 30 H 0.97006 * 120.00038 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.47052 * 183.59869 * 18 8 7 32 32 H 1.08999 * 109.47247 * 303.60417 * 18 8 7 33 33 H 1.00894 * 111.00384 * 179.97438 * 19 18 8 34 34 H 1.00902 * 110.99749 * 303.94943 * 19 18 8 35 35 H 1.07999 * 119.98552 * 180.02562 * 20 7 6 36 36 H 1.09010 * 110.20144 * 332.08596 * 22 2 1 37 37 H 1.08995 * 110.21062 * 93.97861 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9996 1.3821 0.0000 4 6 3.2851 1.3261 0.7935 5 6 4.3571 2.1946 0.8722 6 6 5.4286 1.8982 1.6934 7 6 5.4286 0.7321 2.4361 8 6 6.5973 0.4087 3.3310 9 1 6.4191 -0.5430 3.8316 10 6 7.8528 0.3135 2.5030 11 1 7.8257 0.5571 1.4511 12 6 9.0360 -0.0847 3.0882 13 7 9.0361 -0.5580 4.3152 14 14 10.6390 0.0482 2.1382 15 1 11.1910 1.4186 2.2881 16 1 11.6128 -0.9388 2.6700 17 1 10.3872 -0.2296 0.7013 18 6 6.7592 1.5131 4.3775 19 7 5.5704 1.5485 5.2399 20 6 4.3573 -0.1376 2.3571 21 6 3.2856 0.1579 1.5364 22 6 1.9996 -0.5843 1.2526 23 1 -0.3633 0.5158 -0.8889 24 1 -0.3634 0.5118 0.8911 25 1 -0.3634 -1.0276 -0.0023 26 1 2.2008 1.7083 -1.0204 27 1 1.2900 2.0578 0.4777 28 1 4.3575 3.1054 0.2918 29 1 6.2663 2.5771 1.7542 30 1 9.8686 -0.8378 4.7270 31 1 7.6422 1.3122 4.9841 32 1 6.8734 2.4744 3.8766 33 1 5.6531 2.2700 5.9403 34 1 4.7308 1.6691 4.6935 35 1 4.3574 -1.0483 2.9377 36 1 1.2906 -0.4358 2.0672 37 1 2.2008 -1.6469 1.1167 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261096262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:55 Heat of formation + Delta-G solvation = 11.852202 kcal Electronic energy + Delta-G solvation = -17665.032231 eV Core-core repulsion = 15019.866312 eV Total energy + Delta-G solvation = -2645.165918 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.30906 -38.68182 -36.31618 -34.22090 -32.57802 -32.29989 -30.01832 -28.33455 -26.96614 -25.71213 -23.31494 -23.14079 -22.10417 -20.63575 -18.42824 -17.15170 -16.99889 -16.65735 -16.44003 -16.11186 -15.92223 -15.17987 -14.78299 -14.64225 -14.15777 -14.07251 -13.90570 -13.61183 -13.32522 -13.00558 -12.89281 -12.59052 -12.51931 -12.39483 -12.33888 -12.12892 -11.63672 -11.28270 -11.16638 -10.53080 -9.84641 -9.59111 -9.37751 -8.99196 -8.14072 -6.25148 0.51773 0.58186 1.41009 1.41992 1.51568 2.41810 2.91912 3.05439 3.14246 3.50525 3.64047 4.02355 4.17136 4.30449 4.35612 4.39779 4.49920 4.62646 4.64114 4.65917 4.68434 4.85709 4.89898 4.92413 5.03294 5.18432 5.25181 5.47702 5.50134 5.54415 5.65881 5.82903 5.87394 6.03309 6.07545 6.19390 6.25909 6.51822 6.74219 6.88869 7.41913 8.92693 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031279 B = 0.005744 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.959768 B = 4873.220172 C = 5151.020728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.525 5.525 3 C 0.086 3.914 4 C -0.135 4.135 5 C -0.098 4.098 6 C -0.127 4.127 7 C -0.048 4.048 8 C 0.085 3.915 9 H 0.007 0.993 10 C -0.528 4.528 11 H 0.052 0.948 12 C 0.020 3.980 13 N -0.912 5.912 14 Si 0.951 3.049 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.271 1.271 18 C 0.091 3.909 19 N -0.851 5.851 20 C -0.118 4.118 21 C -0.113 4.113 22 C 0.082 3.918 23 H 0.085 0.915 24 H 0.038 0.962 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.142 0.858 29 H 0.115 0.885 30 H 0.262 0.738 31 H 0.053 0.947 32 H 0.007 0.993 33 H 0.338 0.662 34 H 0.334 0.666 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.035 5.373 -6.368 17.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.249 5.249 3 C -0.041 4.041 4 C -0.135 4.135 5 C -0.116 4.116 6 C -0.145 4.145 7 C -0.048 4.048 8 C 0.066 3.934 9 H 0.026 0.974 10 C -0.567 4.567 11 H 0.070 0.930 12 C -0.180 4.180 13 N -0.550 5.550 14 Si 0.776 3.224 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.196 1.196 18 C -0.039 4.039 19 N -0.380 5.380 20 C -0.136 4.136 21 C -0.114 4.114 22 C -0.046 4.046 23 H 0.104 0.896 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.115 0.885 27 H 0.092 0.908 28 H 0.160 0.840 29 H 0.133 0.867 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.026 0.974 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.124 0.876 36 H 0.090 0.910 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.582 4.241 -6.514 16.524 hybrid contribution 1.011 1.124 0.319 1.546 sum -13.570 5.365 -6.195 15.853 Atomic orbital electron populations 1.22686 0.85383 1.03412 1.01994 1.65212 1.10375 1.15281 1.34010 1.21589 0.91749 0.90547 1.00209 1.20713 0.97196 0.95749 0.99866 1.20613 0.92205 0.99859 0.98903 1.20982 0.98414 0.97479 0.97601 1.20257 0.94521 0.93721 0.96278 1.17668 0.90383 0.94096 0.91214 0.97444 1.21329 0.93802 1.46033 0.95518 0.92984 1.25717 1.02176 0.94149 0.95967 1.70116 1.27714 1.41935 1.15261 0.85679 0.79576 0.78147 0.78964 1.19599 1.20978 1.19613 1.21617 0.92127 0.96015 0.94184 1.58751 1.04879 1.55306 1.19112 1.20415 0.93282 0.99734 1.00187 1.20679 0.96120 0.97146 0.97416 1.21608 0.92010 0.99403 0.91563 0.89592 0.94367 0.90119 0.88504 0.90839 0.83990 0.86659 0.92857 0.92869 0.97445 0.84986 0.85407 0.87561 0.90968 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.35 127.69 1.19 1.41 16 2 N -0.53 -12.38 5.76 -923.39 -5.32 -17.70 16 3 C 0.09 2.00 6.61 85.48 0.57 2.56 16 4 C -0.13 -4.11 6.26 -19.68 -0.12 -4.24 16 5 C -0.10 -3.09 10.04 22.25 0.22 -2.87 16 6 C -0.13 -4.88 8.62 22.27 0.19 -4.69 16 7 C -0.05 -2.06 3.72 -19.86 -0.07 -2.14 16 8 C 0.09 4.35 2.03 -12.28 -0.02 4.33 16 9 H 0.01 0.43 7.82 -2.39 -0.02 0.41 16 10 C -0.53 -29.26 8.19 25.60 0.21 -29.05 16 11 H 0.05 2.88 7.55 -2.91 -0.02 2.86 16 12 C 0.02 1.10 5.17 84.66 0.44 1.54 16 13 N -0.91 -53.30 12.16 21.45 0.26 -53.04 16 14 Si 0.95 43.71 29.55 68.60 2.03 45.73 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 18 C 0.09 4.31 6.01 86.30 0.52 4.83 16 19 N -0.85 -33.87 9.62 -186.71 -1.80 -35.66 16 20 C -0.12 -4.68 9.67 22.25 0.22 -4.46 16 21 C -0.11 -3.77 6.26 -19.68 -0.12 -3.89 16 22 C 0.08 2.14 6.61 85.49 0.57 2.71 16 23 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.04 0.56 7.91 -2.39 -0.02 0.54 16 25 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.07 1.43 7.77 -2.38 -0.02 1.41 16 28 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 29 H 0.12 4.52 7.55 -2.91 -0.02 4.50 16 30 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 31 H 0.05 2.86 6.83 -2.39 -0.02 2.84 16 32 H 0.01 0.34 7.27 -2.39 -0.02 0.32 16 33 H 0.34 11.45 9.08 -89.70 -0.81 10.63 16 34 H 0.33 12.42 8.01 -89.69 -0.72 11.70 16 35 H 0.11 4.31 7.95 -2.91 -0.02 4.29 16 36 H 0.07 1.66 7.69 -2.38 -0.02 1.65 16 37 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -63.09 301.31 -1.51 -64.60 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: -0.46 Total: 30.04 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 3.78 Total: -33.97 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -6.85 Total: -106.41 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -63.09 -1.51 -64.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.452 kcal (2) G-P(sol) polarization free energy of solvation -63.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds