Wall clock time and date at job start Mon Mar 30 2020 04:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47912 * 110.99848 * 2 1 4 4 C 1.54603 * 102.62445 * 149.11335 * 3 2 1 5 5 C 1.51569 * 102.83350 * 334.46041 * 4 3 2 6 6 C 1.37918 * 131.56335 * 196.06926 * 5 4 3 7 7 C 1.38300 * 120.08172 * 179.64869 * 6 5 4 8 8 C 1.50705 * 120.05694 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47490 * 340.00474 * 8 7 6 10 10 N 1.46898 * 109.47002 * 220.00030 * 8 7 6 11 11 C 1.53001 * 109.46659 * 100.00393 * 8 7 6 12 12 C 1.50707 * 109.46859 * 184.99877 * 11 8 7 13 13 H 1.08004 * 119.99810 * 0.02562 * 12 11 8 14 14 C 1.37872 * 120.00326 * 179.97438 * 12 11 8 15 15 N 1.31523 * 119.99644 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00308 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47257 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47312 * 119.99964 * 16 14 12 19 19 H 1.48504 * 109.47327 * 239.99835 * 16 14 12 20 20 C 1.38308 * 119.88440 * 0.02562 * 7 6 5 21 21 C 1.37902 * 120.26348 * 0.09498 * 20 7 6 22 22 C 1.38965 * 107.95560 * 15.94250 * 5 4 3 23 23 H 1.08993 * 109.47071 * 300.03241 * 1 2 3 24 24 H 1.09000 * 109.46980 * 60.03040 * 1 2 3 25 25 H 1.08999 * 109.46775 * 180.02562 * 1 2 3 26 26 H 1.09000 * 110.78136 * 30.82780 * 3 2 1 27 27 H 1.08998 * 110.77768 * 267.39361 * 3 2 1 28 28 H 1.09003 * 110.73663 * 216.12766 * 4 3 2 29 29 H 1.08999 * 110.89530 * 92.86968 * 4 3 2 30 30 H 1.07995 * 119.95906 * 359.67212 * 6 5 4 31 31 H 1.00905 * 110.99755 * 176.04610 * 10 8 7 32 32 H 1.00899 * 111.00423 * 300.00363 * 10 8 7 33 33 H 1.08994 * 109.47592 * 304.99584 * 11 8 7 34 34 H 1.08995 * 109.47135 * 65.00481 * 11 8 7 35 35 H 0.96993 * 119.99863 * 179.97438 * 15 14 12 36 36 H 1.08001 * 119.86417 * 180.11928 * 20 7 6 37 37 H 1.08005 * 119.90139 * 180.28449 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 3.3288 1.2324 0.7745 5 6 3.0803 0.0129 1.6395 6 6 3.7400 -0.4714 2.7496 7 6 3.2974 -1.6251 3.3706 8 6 4.0184 -2.1535 4.5840 9 1 5.0254 -1.7379 4.6179 10 7 4.0955 -3.6185 4.5084 11 6 3.2563 -1.7473 5.8470 12 6 4.0396 -2.1686 7.0636 13 1 4.9865 -2.6750 6.9475 14 6 3.5481 -1.9068 8.3248 15 7 2.3957 -1.2888 8.4662 16 14 4.5193 -2.4283 9.8327 17 1 5.7732 -3.0999 9.4060 18 1 4.8506 -1.2312 10.6466 19 1 3.7061 -3.3691 10.6444 20 6 2.1919 -2.2932 2.8762 21 6 1.5301 -1.8145 1.7650 22 6 1.9709 -0.6530 1.1326 23 1 -0.3633 0.5143 0.8896 24 1 -0.3633 0.5134 -0.8903 25 1 -0.3633 -1.0277 0.0005 26 1 1.3206 2.0555 0.5222 27 1 2.1809 1.7253 -1.0180 28 1 3.5165 2.1114 1.3912 29 1 4.1595 1.0579 0.0907 30 1 4.6032 0.0512 3.1346 31 1 4.6305 -3.9926 5.2778 32 1 3.1739 -4.0279 4.4758 33 1 3.1217 -0.6658 5.8582 34 1 2.2816 -2.2350 5.8557 35 1 2.0497 -1.1049 9.3534 36 1 1.8453 -3.1930 3.3626 37 1 0.6647 -2.3383 1.3866 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261105999.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:44 Heat of formation + Delta-G solvation = 25.910540 kcal Electronic energy + Delta-G solvation = -17450.953695 eV Core-core repulsion = 14806.397392 eV Total energy + Delta-G solvation = -2644.556303 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.47881 -37.42818 -34.57960 -32.64713 -32.33260 -29.53044 -28.51893 -27.89651 -25.78954 -24.12936 -22.66993 -21.53948 -20.77204 -19.13304 -16.77282 -16.37144 -15.95040 -15.51921 -15.07580 -14.61037 -13.96643 -13.80494 -13.40897 -13.21277 -12.93938 -12.56936 -12.42303 -12.34023 -12.06855 -11.84268 -11.56337 -11.37939 -11.19531 -10.97464 -10.62152 -10.52642 -10.20442 -9.95436 -9.49140 -9.13827 -8.48442 -8.39416 -7.82203 -7.26999 -6.08127 -4.12628 1.76159 1.79790 3.25727 3.33944 3.37390 3.75590 4.18720 4.39141 4.65864 4.70028 5.05629 5.10414 5.26634 5.32575 5.35935 5.42287 5.52406 5.60741 5.68184 5.74677 5.84408 5.88560 5.90019 6.10036 6.20768 6.39659 6.66522 6.72050 6.75918 6.95790 7.13065 7.18447 7.46774 7.53013 7.61285 7.86625 8.08761 8.23182 8.35736 8.94645 9.52617 11.02516 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.037832 B = 0.004795 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.944336 B = 5837.531492 C = 5901.667249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.480 5.480 3 C 0.045 3.955 4 C -0.082 4.082 5 C -0.141 4.141 6 C -0.080 4.080 7 C -0.064 4.064 8 C 0.128 3.872 9 H 0.075 0.925 10 N -0.840 5.840 11 C 0.001 3.999 12 C -0.525 4.525 13 H 0.057 0.943 14 C 0.059 3.941 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.083 4.083 21 C -0.133 4.133 22 C 0.070 3.930 23 H 0.037 0.963 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.119 0.881 31 H 0.346 0.654 32 H 0.328 0.672 33 H 0.019 0.981 34 H 0.017 0.983 35 H 0.260 0.740 36 H 0.122 0.878 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.145 3.344 -14.957 15.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.195 5.195 3 C -0.081 4.081 4 C -0.119 4.119 5 C -0.144 4.144 6 C -0.099 4.099 7 C -0.065 4.065 8 C 0.017 3.983 9 H 0.093 0.907 10 N -0.368 5.368 11 C -0.038 4.038 12 C -0.563 4.563 13 H 0.076 0.924 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.720 3.280 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.102 4.102 21 C -0.154 4.154 22 C -0.027 4.027 23 H 0.055 0.945 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.137 0.863 31 H 0.159 0.841 32 H 0.140 0.860 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.140 0.860 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.770 3.312 -16.045 16.479 hybrid contribution -0.431 0.181 2.490 2.534 sum -2.201 3.493 -13.555 14.170 Atomic orbital electron populations 1.22528 0.86453 1.02868 1.01110 1.60671 1.08692 1.14214 1.35938 1.23239 0.95545 0.88236 1.01068 1.21238 0.97443 0.96165 0.97080 1.20336 0.98463 0.98285 0.97269 1.20228 0.99587 0.96064 0.94066 1.19999 0.95618 0.94380 0.96523 1.20479 0.98327 0.88047 0.91441 0.90725 1.59260 1.20636 1.05348 1.51573 1.19804 0.95530 0.97580 0.90882 1.21217 1.05868 1.38344 0.90849 0.92434 1.25020 0.94971 0.95056 0.99189 1.69987 1.18860 1.41260 1.22930 0.86535 0.80154 0.78345 0.82974 1.19620 1.21005 1.21033 1.20652 0.95002 0.99404 0.95184 1.20336 1.01542 0.96205 0.97305 1.19488 0.96901 0.96165 0.90189 0.94454 0.91072 0.90852 0.92446 0.89149 0.90313 0.89818 0.86298 0.84108 0.86035 0.96265 0.96475 0.92984 0.85980 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.16 60.06 0.55 0.74 16 2 N -0.48 -6.39 5.31 -176.84 -0.94 -7.32 16 3 C 0.05 0.50 6.91 -2.42 -0.02 0.49 16 4 C -0.08 -1.00 7.04 -26.61 -0.19 -1.19 16 5 C -0.14 -2.25 6.23 -104.04 -0.65 -2.89 16 6 C -0.08 -1.42 9.66 -39.68 -0.38 -1.80 16 7 C -0.06 -1.21 4.96 -104.57 -0.52 -1.73 16 8 C 0.13 2.66 2.99 -68.86 -0.21 2.45 16 9 H 0.07 1.58 8.01 -51.93 -0.42 1.16 16 10 N -0.84 -15.94 9.02 -5.65 -0.05 -15.99 16 11 C 0.00 0.01 4.60 -27.88 -0.13 -0.12 16 12 C -0.52 -14.20 8.55 -34.44 -0.29 -14.50 16 13 H 0.06 1.50 7.15 -52.48 -0.38 1.13 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 16 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 C -0.08 -1.47 9.28 -39.68 -0.37 -1.83 16 21 C -0.13 -2.13 9.53 -39.27 -0.37 -2.50 16 22 C 0.07 1.10 5.95 -83.40 -0.50 0.60 16 23 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.76 7.31 -51.93 -0.38 0.38 16 26 H 0.06 0.59 7.84 -51.93 -0.41 0.19 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.12 1.95 8.04 -52.49 -0.42 1.53 16 31 H 0.35 6.65 7.90 -39.29 -0.31 6.34 16 32 H 0.33 5.93 7.35 -39.29 -0.29 5.64 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.12 2.03 6.67 -52.49 -0.35 1.68 16 37 H 0.11 1.56 7.38 -52.48 -0.39 1.18 16 LS Contribution 301.68 15.07 4.55 4.55 Total: -1.00 -30.35 301.68 -9.32 -39.68 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -5.43 Total: 9.30 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -3.17 Total: -20.72 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.25 Total: -48.98 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.35 -9.32 -39.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261105999.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.586 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds