Wall clock time and date at job start Mon Mar 30 2020 04:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47912 * 110.99848 * 2 1 4 4 C 1.54603 * 102.62445 * 149.11335 * 3 2 1 5 5 C 1.51569 * 102.83350 * 334.46041 * 4 3 2 6 6 C 1.37918 * 131.56335 * 196.06926 * 5 4 3 7 7 C 1.38300 * 120.08172 * 179.64869 * 6 5 4 8 8 C 1.50705 * 120.05694 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47490 * 340.00474 * 8 7 6 10 10 N 1.46898 * 109.47002 * 220.00030 * 8 7 6 11 11 C 1.53001 * 109.46659 * 100.00393 * 8 7 6 12 12 C 1.50707 * 109.46859 * 184.99877 * 11 8 7 13 13 H 1.08004 * 119.99810 * 0.02562 * 12 11 8 14 14 C 1.37872 * 120.00326 * 179.97438 * 12 11 8 15 15 N 1.31523 * 119.99644 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00308 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47257 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47312 * 119.99964 * 16 14 12 19 19 H 1.48504 * 109.47327 * 239.99835 * 16 14 12 20 20 C 1.38308 * 119.88440 * 0.02562 * 7 6 5 21 21 C 1.37902 * 120.26348 * 0.09498 * 20 7 6 22 22 C 1.38965 * 107.95560 * 15.94250 * 5 4 3 23 23 H 1.08993 * 109.47071 * 300.03241 * 1 2 3 24 24 H 1.09000 * 109.46980 * 60.03040 * 1 2 3 25 25 H 1.08999 * 109.46775 * 180.02562 * 1 2 3 26 26 H 1.09000 * 110.78136 * 30.82780 * 3 2 1 27 27 H 1.08998 * 110.77768 * 267.39361 * 3 2 1 28 28 H 1.09003 * 110.73663 * 216.12766 * 4 3 2 29 29 H 1.08999 * 110.89530 * 92.86968 * 4 3 2 30 30 H 1.07995 * 119.95906 * 359.67212 * 6 5 4 31 31 H 1.00905 * 110.99755 * 176.04610 * 10 8 7 32 32 H 1.00899 * 111.00423 * 300.00363 * 10 8 7 33 33 H 1.08994 * 109.47592 * 304.99584 * 11 8 7 34 34 H 1.08995 * 109.47135 * 65.00481 * 11 8 7 35 35 H 0.96993 * 119.99863 * 179.97438 * 15 14 12 36 36 H 1.08001 * 119.86417 * 180.11928 * 20 7 6 37 37 H 1.08005 * 119.90139 * 180.28449 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 3.3288 1.2324 0.7745 5 6 3.0803 0.0129 1.6395 6 6 3.7400 -0.4714 2.7496 7 6 3.2974 -1.6251 3.3706 8 6 4.0184 -2.1535 4.5840 9 1 5.0254 -1.7379 4.6179 10 7 4.0955 -3.6185 4.5084 11 6 3.2563 -1.7473 5.8470 12 6 4.0396 -2.1686 7.0636 13 1 4.9865 -2.6750 6.9475 14 6 3.5481 -1.9068 8.3248 15 7 2.3957 -1.2888 8.4662 16 14 4.5193 -2.4283 9.8327 17 1 5.7732 -3.0999 9.4060 18 1 4.8506 -1.2312 10.6466 19 1 3.7061 -3.3691 10.6444 20 6 2.1919 -2.2932 2.8762 21 6 1.5301 -1.8145 1.7650 22 6 1.9709 -0.6530 1.1326 23 1 -0.3633 0.5143 0.8896 24 1 -0.3633 0.5134 -0.8903 25 1 -0.3633 -1.0277 0.0005 26 1 1.3206 2.0555 0.5222 27 1 2.1809 1.7253 -1.0180 28 1 3.5165 2.1114 1.3912 29 1 4.1595 1.0579 0.0907 30 1 4.6032 0.0512 3.1346 31 1 4.6305 -3.9926 5.2778 32 1 3.1739 -4.0279 4.4758 33 1 3.1217 -0.6658 5.8582 34 1 2.2816 -2.2350 5.8557 35 1 2.0497 -1.1049 9.3534 36 1 1.8453 -3.1930 3.3626 37 1 0.6647 -2.3383 1.3866 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261105999.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:44 Heat of formation + Delta-G solvation = 6.004922 kcal Electronic energy + Delta-G solvation = -17451.816867 eV Core-core repulsion = 14806.397392 eV Total energy + Delta-G solvation = -2645.419476 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.62486 -38.80757 -36.16654 -34.37557 -33.67821 -30.80865 -29.87984 -29.65198 -26.93013 -25.79137 -23.86314 -23.17031 -21.88533 -20.60824 -18.73494 -17.57084 -17.17754 -16.72339 -16.59617 -16.39663 -15.22716 -15.14810 -14.68007 -14.61082 -14.27670 -14.13306 -13.92985 -13.64313 -13.58318 -13.08828 -12.91681 -12.68035 -12.57821 -12.31873 -12.26127 -12.16836 -11.84055 -11.67677 -11.14853 -10.70828 -10.61632 -9.69570 -9.42861 -8.53989 -8.21719 -6.35000 0.46393 0.49868 1.38599 1.39835 1.52527 2.38103 2.66546 2.95649 3.10571 3.58354 3.73513 3.90394 4.09614 4.20135 4.24158 4.27434 4.44703 4.49892 4.55560 4.60390 4.70145 4.80239 4.87076 4.91605 4.98702 5.02976 5.14347 5.29005 5.39522 5.48728 5.52485 5.73008 5.75438 5.85464 6.03015 6.14989 6.29582 6.41110 6.73119 6.81893 7.35213 8.88816 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.037832 B = 0.004795 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.944336 B = 5837.531492 C = 5901.667249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.487 5.487 3 C 0.046 3.954 4 C -0.081 4.081 5 C -0.153 4.153 6 C -0.094 4.094 7 C -0.094 4.094 8 C 0.144 3.856 9 H 0.067 0.933 10 N -0.828 5.828 11 C 0.013 3.987 12 C -0.536 4.536 13 H 0.066 0.934 14 C 0.002 3.998 15 N -0.933 5.933 16 Si 0.965 3.035 17 H -0.259 1.259 18 H -0.282 1.282 19 H -0.280 1.280 20 C -0.094 4.094 21 C -0.139 4.139 22 C 0.070 3.930 23 H 0.032 0.968 24 H 0.097 0.903 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.118 0.882 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.121 0.879 31 H 0.344 0.656 32 H 0.334 0.666 33 H -0.016 1.016 34 H -0.008 1.008 35 H 0.263 0.737 36 H 0.124 0.876 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.916 3.607 -16.319 16.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.202 5.202 3 C -0.079 4.079 4 C -0.118 4.118 5 C -0.156 4.156 6 C -0.113 4.113 7 C -0.095 4.095 8 C 0.032 3.968 9 H 0.085 0.915 10 N -0.357 5.357 11 C -0.026 4.026 12 C -0.574 4.574 13 H 0.084 0.916 14 C -0.196 4.196 15 N -0.573 5.573 16 Si 0.790 3.210 17 H -0.182 1.182 18 H -0.208 1.208 19 H -0.206 1.206 20 C -0.113 4.113 21 C -0.160 4.160 22 C -0.028 4.028 23 H 0.050 0.950 24 H 0.116 0.884 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.136 0.864 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.139 0.861 31 H 0.157 0.843 32 H 0.146 0.854 33 H 0.003 0.997 34 H 0.010 0.990 35 H 0.071 0.929 36 H 0.142 0.858 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.539 3.571 -17.435 17.863 hybrid contribution -0.559 0.145 2.798 2.857 sum -2.098 3.716 -14.637 15.247 Atomic orbital electron populations 1.22627 0.84839 1.03472 1.02165 1.60689 1.10143 1.15332 1.34058 1.23403 0.94728 0.87139 1.02636 1.21366 0.98715 0.94851 0.96908 1.20754 0.98232 0.99672 0.96903 1.20355 1.00136 0.95844 0.94982 1.19901 0.96926 0.95865 0.96814 1.20163 0.97310 0.88862 0.90448 0.91453 1.59252 1.20982 1.04287 1.51144 1.19659 0.94842 0.94918 0.93181 1.21609 1.06186 1.37924 0.91657 0.91583 1.25955 0.95925 0.95022 1.02661 1.70126 1.20720 1.42694 1.23772 0.85395 0.78973 0.77937 0.78712 1.18242 1.20790 1.20574 1.20744 0.94929 0.99646 0.95994 1.20543 1.02009 0.96620 0.96807 1.19805 0.96674 0.95912 0.90419 0.94952 0.88427 0.90616 0.91601 0.86363 0.89146 0.88579 0.86073 0.84265 0.85388 0.99741 0.98987 0.92871 0.85838 0.84634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.16 127.69 1.17 1.46 16 2 N -0.49 -11.66 5.31 -713.40 -3.79 -15.45 16 3 C 0.05 0.88 6.91 86.65 0.60 1.48 16 4 C -0.08 -1.80 7.04 30.67 0.22 -1.58 16 5 C -0.15 -4.74 6.23 -19.49 -0.12 -4.86 16 6 C -0.09 -3.36 9.66 22.21 0.21 -3.15 16 7 C -0.09 -3.65 4.96 -19.83 -0.10 -3.75 16 8 C 0.14 6.15 2.99 44.17 0.13 6.28 16 9 H 0.07 2.94 8.01 -2.39 -0.02 2.92 16 10 N -0.83 -31.81 9.02 -171.80 -1.55 -33.36 16 11 C 0.01 0.67 4.60 29.85 0.14 0.80 16 12 C -0.54 -29.53 8.55 25.60 0.22 -29.31 16 13 H 0.07 3.45 7.15 -2.91 -0.02 3.43 16 14 C 0.00 0.13 5.46 84.65 0.46 0.60 16 15 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 16 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 17 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 C -0.09 -3.36 9.28 22.21 0.21 -3.15 16 21 C -0.14 -4.35 9.53 22.47 0.21 -4.14 16 22 C 0.07 2.10 5.95 38.29 0.23 2.33 16 23 H 0.03 0.65 8.09 -2.39 -0.02 0.63 16 24 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.08 1.39 7.31 -2.39 -0.02 1.37 16 26 H 0.07 1.15 7.84 -2.39 -0.02 1.13 16 27 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.12 4.09 8.04 -2.91 -0.02 4.07 16 31 H 0.34 13.28 7.90 -89.69 -0.71 12.57 16 32 H 0.33 12.24 7.35 -89.69 -0.66 11.58 16 33 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 34 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 35 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 36 H 0.12 4.20 6.67 -2.91 -0.02 4.19 16 37 H 0.14 3.53 7.38 -2.91 -0.02 3.51 16 Total: -1.00 -65.88 301.68 0.26 -65.63 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: -0.29 Total: 30.74 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: 3.58 Total: -36.99 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -5.05 Total: -105.10 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -65.88 0.26 -65.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261105999.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.632 kcal (2) G-P(sol) polarization free energy of solvation -65.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds