Wall clock time and date at job start Mon Mar 30 2020 03:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 H 1.09008 * 109.46682 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47315 * 299.99864 * 9 7 2 12 12 C 1.50699 * 109.47111 * 185.00124 * 11 9 7 13 13 C 1.38229 * 120.00253 * 269.72576 * 12 11 9 14 14 C 1.38233 * 120.00301 * 179.76991 * 13 12 11 15 15 C 1.38234 * 119.99879 * 0.50262 * 14 13 12 16 16 C 1.38237 * 119.99807 * 359.75337 * 15 14 13 17 17 C 1.38231 * 120.00125 * 359.97438 * 16 15 14 18 18 N 1.46901 * 109.47048 * 60.00279 * 9 7 2 19 19 C 1.47480 * 110.99940 * 155.97076 * 18 9 7 20 20 C 1.53515 * 87.93032 * 221.29295 * 19 18 9 21 21 N 1.46900 * 114.16864 * 272.37384 * 20 19 18 22 22 C 1.47483 * 111.00248 * 59.99730 * 18 9 7 23 23 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47373 * 305.00305 * 11 9 7 25 25 H 1.09001 * 109.47176 * 65.00058 * 11 9 7 26 26 H 1.08006 * 119.99980 * 359.97438 * 13 12 11 27 27 H 1.07994 * 120.00155 * 180.23312 * 14 13 12 28 28 H 1.07998 * 120.00525 * 179.72878 * 15 14 13 29 29 H 1.08001 * 119.99830 * 179.97438 * 16 15 14 30 30 H 1.07997 * 120.00148 * 179.97438 * 17 16 15 31 31 H 1.09002 * 113.47574 * 336.05628 * 19 18 9 32 32 H 1.08993 * 113.47795 * 106.52778 * 19 18 9 33 33 H 1.09007 * 114.17015 * 139.66991 * 20 19 18 34 34 H 1.00905 * 111.00214 * 273.84167 * 21 20 19 35 35 H 1.00895 * 110.99931 * 37.79693 * 21 20 19 36 36 H 1.08995 * 113.47271 * 253.46924 * 22 18 9 37 37 H 1.08994 * 113.47403 * 23.87543 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 1 3.8747 -2.2220 0.0165 11 6 4.0267 -0.4760 -1.2367 12 6 5.5289 -0.5826 -1.2936 13 6 6.3137 0.3884 -0.7003 14 6 7.6915 0.2881 -0.7484 15 6 8.2847 -0.7777 -1.3988 16 6 7.4999 -1.7460 -1.9967 17 6 6.1220 -1.6487 -1.9438 18 7 3.9961 -0.4988 1.2119 19 6 5.3564 -0.9440 1.5675 20 6 4.9134 -0.9400 3.0373 21 7 5.0773 0.3549 3.7114 22 6 3.5180 -1.1646 2.4380 23 1 -0.4849 0.8401 -0.0004 24 1 3.5958 -0.9376 -2.1252 25 1 3.7382 0.5743 -1.1968 26 1 5.8503 1.2237 -0.1963 27 1 8.3046 1.0448 -0.2816 28 1 9.3612 -0.8538 -1.4402 29 1 7.9633 -2.5785 -2.5052 30 1 5.5089 -2.4049 -2.4112 31 1 5.6007 -1.9371 1.1904 32 1 6.1270 -0.2063 1.3443 33 1 5.2898 -1.7814 3.6193 34 1 6.0090 0.4520 4.0864 35 1 4.8570 1.1173 3.0883 36 1 2.7307 -0.6137 2.9524 37 1 3.2708 -2.2162 2.2929 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261150867.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:29 Heat of formation + Delta-G solvation = 79.548140 kcal Electronic energy + Delta-G solvation = -18663.717618 eV Core-core repulsion = 16021.487216 eV Total energy + Delta-G solvation = -2642.230402 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.98030 -38.50141 -34.53012 -32.09058 -31.56099 -30.64570 -29.15147 -25.45824 -25.16165 -24.34558 -22.25069 -21.31214 -20.26354 -18.86339 -16.76987 -16.46429 -15.75293 -15.44423 -14.82499 -14.61859 -14.37215 -13.72380 -13.25909 -13.17235 -13.05173 -12.69614 -12.42979 -12.27939 -11.93642 -11.81054 -11.13666 -10.85668 -10.65886 -10.43919 -10.28751 -10.08792 -9.99049 -9.47151 -9.15162 -8.65115 -8.57017 -8.33339 -8.05808 -7.39316 -6.08484 -4.16564 1.69500 1.71392 3.40753 3.54602 3.78917 4.11707 4.57949 4.78093 4.94721 5.17714 5.18461 5.20243 5.29545 5.38358 5.49858 5.64150 5.80667 5.86814 5.97124 6.12431 6.16476 6.26970 6.27947 6.39720 6.43800 6.51116 6.57461 6.77024 6.78174 6.81232 6.96135 7.13425 7.23202 7.36590 7.52383 7.71654 7.80769 8.09765 8.48570 8.89745 9.56487 11.01934 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020411 B = 0.010600 C = 0.008593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.489409 B = 2640.791956 C = 3257.633964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.087 3.913 3 Si 0.863 3.137 4 H -0.295 1.295 5 H -0.309 1.309 6 H -0.191 1.191 7 C -0.527 4.527 8 H 0.070 0.930 9 C 0.162 3.838 10 H 0.021 0.979 11 C -0.081 4.081 12 C -0.061 4.061 13 C -0.107 4.107 14 C -0.128 4.128 15 C -0.138 4.138 16 C -0.124 4.124 17 C -0.123 4.123 18 N -0.458 5.458 19 C -0.048 4.048 20 C 0.053 3.947 21 N -0.822 5.822 22 C 0.035 3.965 23 H 0.264 0.736 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.120 0.880 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.332 0.668 35 H 0.350 0.650 36 H 0.079 0.921 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.231 -0.560 0.583 15.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.117 4.117 3 Si 0.693 3.307 4 H -0.224 1.224 5 H -0.238 1.238 6 H -0.113 1.113 7 C -0.564 4.564 8 H 0.088 0.912 9 C 0.055 3.945 10 H 0.039 0.961 11 C -0.119 4.119 12 C -0.061 4.061 13 C -0.125 4.125 14 C -0.146 4.146 15 C -0.156 4.156 16 C -0.142 4.142 17 C -0.142 4.142 18 N -0.182 5.182 19 C -0.179 4.179 20 C -0.060 4.060 21 N -0.351 5.351 22 C -0.095 4.095 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.138 0.862 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.144 0.856 35 H 0.164 0.836 36 H 0.097 0.903 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.325 -0.025 0.930 14.355 hybrid contribution 1.011 0.119 -0.952 1.393 sum 15.336 0.093 -0.022 15.336 Atomic orbital electron populations 1.69937 1.06930 1.27393 1.48844 1.25017 0.94514 0.99791 0.92423 0.87400 0.84086 0.81639 0.77593 1.22363 1.23776 1.11280 1.20808 0.87765 0.94552 1.53305 0.91190 1.20097 0.96263 0.91503 0.86644 0.96094 1.21130 0.88235 1.01955 1.00587 1.20338 0.97258 0.93573 0.94901 1.21085 0.93233 0.99237 0.98968 1.21048 0.94823 0.98331 1.00381 1.20956 0.99074 0.95550 1.00019 1.21029 0.93911 0.98912 1.00386 1.21087 0.94524 0.98322 1.00220 1.69532 1.00962 1.44867 1.02835 1.24847 0.96503 0.99601 0.96920 1.22798 0.98849 0.92157 0.92242 1.58604 1.31664 1.03721 1.41088 1.23439 0.95659 0.98716 0.91676 0.92684 0.90950 0.91532 0.86161 0.86886 0.87000 0.86840 0.86401 0.92652 0.90603 0.90210 0.85605 0.83594 0.90267 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 2 C 0.09 2.47 5.45 -17.82 -0.10 2.37 16 3 Si 0.86 21.28 23.81 -169.99 -4.05 17.23 16 4 H -0.30 -7.35 6.91 56.52 0.39 -6.96 16 5 H -0.31 -7.99 7.11 56.52 0.40 -7.59 16 6 H -0.19 -4.27 5.16 56.52 0.29 -3.98 16 7 C -0.53 -14.29 8.55 -34.44 -0.29 -14.59 16 8 H 0.07 2.10 8.06 -52.49 -0.42 1.67 16 9 C 0.16 3.61 1.53 -68.87 -0.11 3.51 16 10 H 0.02 0.47 7.52 -51.92 -0.39 0.08 16 11 C -0.08 -1.70 4.49 -27.89 -0.13 -1.83 16 12 C -0.06 -1.07 4.07 -104.63 -0.43 -1.50 16 13 C -0.11 -1.75 6.24 -39.59 -0.25 -2.00 16 14 C -0.13 -1.77 9.92 -39.58 -0.39 -2.16 16 15 C -0.14 -1.80 10.05 -39.58 -0.40 -2.20 16 16 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 17 C -0.12 -1.96 9.70 -39.58 -0.38 -2.34 16 18 N -0.46 -9.22 2.49 -237.99 -0.59 -9.81 16 19 C -0.05 -0.80 5.15 -7.54 -0.04 -0.84 16 20 C 0.05 0.84 5.42 -67.50 -0.37 0.48 16 21 N -0.82 -12.23 9.68 -4.43 -0.04 -12.27 16 22 C 0.03 0.68 6.67 -7.54 -0.05 0.63 16 23 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.07 1.52 8.09 -51.93 -0.42 1.10 16 25 H 0.07 1.49 3.36 -51.93 -0.17 1.32 16 26 H 0.12 2.03 7.97 -52.48 -0.42 1.61 16 27 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 28 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 29 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.06 0.97 7.54 -51.93 -0.39 0.58 16 32 H 0.08 1.23 5.43 -51.93 -0.28 0.95 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.33 4.01 9.08 -39.29 -0.36 3.65 16 35 H 0.35 5.55 8.71 -39.29 -0.34 5.21 16 36 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 37 H 0.07 1.31 7.89 -51.93 -0.41 0.90 16 LS Contribution 286.85 15.07 4.32 4.32 Total: -1.00 -29.56 286.85 -8.31 -37.86 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -5.40 Total: 11.74 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -3.32 Total: -22.57 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.14 Total: -48.59 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.05 Total: 17.23 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.56 -8.31 -37.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150867.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.413 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds