Wall clock time and date at job start Mon Mar 30 2020 03:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 H 1.09008 * 109.46682 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47315 * 299.99864 * 9 7 2 12 12 C 1.50699 * 109.47111 * 185.00124 * 11 9 7 13 13 C 1.38229 * 120.00253 * 269.72576 * 12 11 9 14 14 C 1.38233 * 120.00301 * 179.76991 * 13 12 11 15 15 C 1.38234 * 119.99879 * 0.50262 * 14 13 12 16 16 C 1.38237 * 119.99807 * 359.75337 * 15 14 13 17 17 C 1.38231 * 120.00125 * 359.97438 * 16 15 14 18 18 N 1.46901 * 109.47048 * 60.00279 * 9 7 2 19 19 C 1.47480 * 110.99940 * 155.97076 * 18 9 7 20 20 C 1.53515 * 87.93032 * 221.29295 * 19 18 9 21 21 N 1.46900 * 114.16864 * 272.37384 * 20 19 18 22 22 C 1.47483 * 111.00248 * 59.99730 * 18 9 7 23 23 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47373 * 305.00305 * 11 9 7 25 25 H 1.09001 * 109.47176 * 65.00058 * 11 9 7 26 26 H 1.08006 * 119.99980 * 359.97438 * 13 12 11 27 27 H 1.07994 * 120.00155 * 180.23312 * 14 13 12 28 28 H 1.07998 * 120.00525 * 179.72878 * 15 14 13 29 29 H 1.08001 * 119.99830 * 179.97438 * 16 15 14 30 30 H 1.07997 * 120.00148 * 179.97438 * 17 16 15 31 31 H 1.09002 * 113.47574 * 336.05628 * 19 18 9 32 32 H 1.08993 * 113.47795 * 106.52778 * 19 18 9 33 33 H 1.09007 * 114.17015 * 139.66991 * 20 19 18 34 34 H 1.00905 * 111.00214 * 273.84167 * 21 20 19 35 35 H 1.00895 * 110.99931 * 37.79693 * 21 20 19 36 36 H 1.08995 * 113.47271 * 253.46924 * 22 18 9 37 37 H 1.08994 * 113.47403 * 23.87543 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 1 3.8747 -2.2220 0.0165 11 6 4.0267 -0.4760 -1.2367 12 6 5.5289 -0.5826 -1.2936 13 6 6.3137 0.3884 -0.7003 14 6 7.6915 0.2881 -0.7484 15 6 8.2847 -0.7777 -1.3988 16 6 7.4999 -1.7460 -1.9967 17 6 6.1220 -1.6487 -1.9438 18 7 3.9961 -0.4988 1.2119 19 6 5.3564 -0.9440 1.5675 20 6 4.9134 -0.9400 3.0373 21 7 5.0773 0.3549 3.7114 22 6 3.5180 -1.1646 2.4380 23 1 -0.4849 0.8401 -0.0004 24 1 3.5958 -0.9376 -2.1252 25 1 3.7382 0.5743 -1.1968 26 1 5.8503 1.2237 -0.1963 27 1 8.3046 1.0448 -0.2816 28 1 9.3612 -0.8538 -1.4402 29 1 7.9633 -2.5785 -2.5052 30 1 5.5089 -2.4049 -2.4112 31 1 5.6007 -1.9371 1.1904 32 1 6.1270 -0.2063 1.3443 33 1 5.2898 -1.7814 3.6193 34 1 6.0090 0.4520 4.0864 35 1 4.8570 1.1173 3.0883 36 1 2.7307 -0.6137 2.9524 37 1 3.2708 -2.2162 2.2929 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261150867.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:28 Heat of formation + Delta-G solvation = 58.750585 kcal Electronic energy + Delta-G solvation = -18664.619468 eV Core-core repulsion = 16021.487216 eV Total energy + Delta-G solvation = -2643.132252 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.45467 -39.72535 -36.18503 -34.06021 -32.86520 -31.76357 -30.70025 -27.09936 -26.63254 -26.04429 -23.41388 -22.84724 -21.77683 -20.29718 -18.67461 -17.64258 -17.22226 -17.11757 -16.30352 -15.91845 -15.76652 -15.17959 -14.98339 -14.78452 -14.34126 -14.10754 -13.99400 -13.57089 -13.43143 -13.30634 -12.77075 -12.42416 -12.23851 -12.11840 -11.82342 -11.71948 -11.65241 -11.18785 -10.96997 -10.77355 -9.70669 -9.57602 -9.38575 -9.04251 -8.32056 -6.42597 0.55876 0.58707 1.38839 1.49294 1.79838 2.48116 2.95494 3.05249 3.45658 3.57378 3.90493 4.01823 4.04689 4.21657 4.25665 4.35792 4.41780 4.58500 4.67412 4.69674 4.74945 4.81009 4.85065 4.91971 5.09734 5.11823 5.19406 5.26335 5.27417 5.49931 5.68025 5.69338 5.74256 5.89309 6.19310 6.24266 6.29906 6.44070 6.68590 6.74873 7.34245 8.82226 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020411 B = 0.010600 C = 0.008593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.489409 B = 2640.791956 C = 3257.633964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.035 3.965 3 Si 0.922 3.078 4 H -0.298 1.298 5 H -0.325 1.325 6 H -0.152 1.152 7 C -0.525 4.525 8 H 0.023 0.977 9 C 0.173 3.827 10 H 0.016 0.984 11 C -0.075 4.075 12 C -0.083 4.083 13 C -0.118 4.118 14 C -0.122 4.122 15 C -0.128 4.128 16 C -0.121 4.121 17 C -0.136 4.136 18 N -0.467 5.467 19 C -0.034 4.034 20 C 0.078 3.922 21 N -0.824 5.824 22 C 0.022 3.978 23 H 0.262 0.738 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.113 0.887 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.141 0.859 30 H 0.114 0.886 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.354 0.646 35 H 0.347 0.653 36 H 0.053 0.947 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.016 0.098 1.152 20.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.164 4.164 3 Si 0.750 3.250 4 H -0.226 1.226 5 H -0.255 1.255 6 H -0.073 1.073 7 C -0.563 4.563 8 H 0.042 0.958 9 C 0.066 3.934 10 H 0.034 0.966 11 C -0.113 4.113 12 C -0.083 4.083 13 C -0.136 4.136 14 C -0.139 4.139 15 C -0.145 4.145 16 C -0.139 4.139 17 C -0.154 4.154 18 N -0.191 5.191 19 C -0.165 4.165 20 C -0.036 4.036 21 N -0.354 5.354 22 C -0.108 4.108 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.131 0.869 27 H 0.161 0.839 28 H 0.165 0.835 29 H 0.158 0.842 30 H 0.132 0.868 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.168 0.832 35 H 0.160 0.840 36 H 0.071 0.929 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 19.153 0.614 1.511 19.223 hybrid contribution -0.433 -0.227 -1.149 1.249 sum 18.721 0.387 0.361 18.728 Atomic orbital electron populations 1.70084 1.08840 1.28025 1.51715 1.25809 0.95013 1.03339 0.92280 0.86568 0.84147 0.76734 0.77524 1.22630 1.25502 1.07296 1.21044 0.90791 0.92534 1.51920 0.95847 1.19853 0.92844 0.92039 0.88712 0.96610 1.20856 0.91439 1.00214 0.98811 1.20002 0.94875 0.95639 0.97751 1.21074 0.94461 0.98660 0.99372 1.21355 0.93767 0.99091 0.99732 1.21403 1.00850 0.94286 0.97988 1.21346 0.92781 0.99902 0.99886 1.21173 0.95945 0.97894 1.00422 1.69279 1.03410 1.44643 1.01750 1.24796 0.94593 0.99871 0.97217 1.22642 0.95082 0.93628 0.92209 1.58522 1.33402 1.02848 1.40636 1.23488 0.97553 0.97576 0.92219 0.92916 0.92560 0.93001 0.86864 0.83946 0.83509 0.84161 0.86796 0.92779 0.88856 0.87695 0.83184 0.83989 0.92868 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.00 13.96 21.45 0.30 -60.70 16 2 C 0.03 2.05 5.45 84.66 0.46 2.51 16 3 Si 0.92 45.39 23.81 68.60 1.63 47.03 16 4 H -0.30 -14.67 6.91 99.48 0.69 -13.98 16 5 H -0.32 -16.76 7.11 99.48 0.71 -16.05 16 6 H -0.15 -6.50 5.16 99.48 0.51 -5.99 16 7 C -0.52 -30.08 8.55 25.60 0.22 -29.86 16 8 H 0.02 1.51 8.06 -2.91 -0.02 1.48 16 9 C 0.17 7.88 1.53 44.17 0.07 7.95 16 10 H 0.02 0.73 7.52 -2.38 -0.02 0.71 16 11 C -0.08 -3.17 4.49 29.85 0.13 -3.03 16 12 C -0.08 -2.78 4.07 -19.87 -0.08 -2.86 16 13 C -0.12 -3.44 6.24 22.27 0.14 -3.30 16 14 C -0.12 -2.74 9.92 22.27 0.22 -2.52 16 15 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16 16 C -0.12 -2.80 10.05 22.27 0.22 -2.58 16 17 C -0.14 -4.04 9.70 22.27 0.22 -3.82 16 18 N -0.47 -18.42 2.49 -906.88 -2.26 -20.68 16 19 C -0.03 -1.05 5.15 83.58 0.43 -0.62 16 20 C 0.08 2.26 5.42 45.37 0.25 2.51 16 21 N -0.82 -21.64 9.68 -167.93 -1.63 -23.26 16 22 C 0.02 0.84 6.67 83.58 0.56 1.40 16 23 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 24 H 0.06 2.46 8.09 -2.39 -0.02 2.44 16 25 H 0.05 2.31 3.36 -2.39 -0.01 2.30 16 26 H 0.11 3.45 7.97 -2.91 -0.02 3.42 16 27 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 28 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 29 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 30 H 0.11 3.35 8.06 -2.91 -0.02 3.33 16 31 H 0.05 1.74 7.54 -2.39 -0.02 1.72 16 32 H 0.09 2.62 5.43 -2.39 -0.01 2.61 16 33 H 0.11 2.62 8.14 -2.38 -0.02 2.60 16 34 H 0.35 6.93 9.08 -89.69 -0.81 6.12 16 35 H 0.35 9.81 8.71 -89.70 -0.78 9.03 16 36 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.05 2.20 7.89 -2.39 -0.02 2.18 16 Total: -1.00 -68.21 286.85 0.38 -67.83 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: -0.73 Total: 26.39 kcal Atomic # 6 Polarization: -39.67 SS G_CDS: 3.06 Total: -36.61 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -3.58 Total: -104.64 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.63 Total: 47.03 kcal Total: -68.21 0.38 -67.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150867.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.585 kcal (2) G-P(sol) polarization free energy of solvation -68.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds