Wall clock time and date at job start Mon Mar 30 2020 03:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99822 * 2 1 4 4 H 1.48502 * 109.46905 * 270.00467 * 3 2 1 5 5 H 1.48496 * 109.46748 * 30.00112 * 3 2 1 6 6 H 1.48495 * 109.47428 * 150.00231 * 3 2 1 7 7 C 1.37880 * 120.00444 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99706 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99703 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47016 * 54.65896 * 9 7 2 11 11 C 1.52999 * 109.47099 * 294.65246 * 9 7 2 12 12 N 1.46892 * 109.46923 * 185.30700 * 11 9 7 13 13 N 1.46901 * 109.46755 * 174.65118 * 9 7 2 14 14 C 1.46436 * 110.99794 * 65.03777 * 13 9 7 15 15 C 1.53368 * 108.67384 * 181.01824 * 14 13 9 16 16 C 1.53044 * 107.94435 * 68.15969 * 15 14 13 17 17 C 1.50798 * 109.66215 * 312.63337 * 16 15 14 18 18 C 1.38613 * 118.13628 * 195.63624 * 17 16 15 19 19 C 1.38053 * 120.49004 * 180.66018 * 18 17 16 20 20 C 1.38318 * 119.88620 * 0.23729 * 19 18 17 21 21 C 1.37805 * 119.94939 * 359.34982 * 20 19 18 22 22 C 1.38378 * 122.00453 * 15.99379 * 17 16 15 23 23 H 0.96993 * 120.00236 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46738 * 305.30760 * 11 9 7 25 25 H 1.09001 * 109.46912 * 65.30522 * 11 9 7 26 26 H 1.00905 * 110.99815 * 180.02562 * 12 11 9 27 27 H 1.00902 * 110.99716 * 303.95253 * 12 11 9 28 28 H 1.09003 * 109.60048 * 300.77795 * 14 13 9 29 29 H 1.08996 * 109.59979 * 61.26063 * 14 13 9 30 30 H 1.09005 * 109.76611 * 187.76432 * 15 14 13 31 31 H 1.08994 * 109.77109 * 308.48752 * 15 14 13 32 32 H 1.09004 * 109.43585 * 192.57877 * 16 15 14 33 33 H 1.08998 * 109.44310 * 72.69776 * 16 15 14 34 34 H 1.08002 * 119.75197 * 0.63213 * 18 17 16 35 35 H 1.07999 * 120.05299 * 179.97438 * 19 18 17 36 36 H 1.07996 * 120.01858 * 179.59224 * 20 19 18 37 37 H 1.08000 * 119.78801 * 180.27380 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4404 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.5544 -2.5164 -0.8385 11 6 0.4756 -2.6403 1.3108 12 7 -0.1559 -3.9654 1.3659 13 7 2.2005 -3.6126 -0.1303 14 6 3.0780 -3.6930 1.0393 15 6 4.0607 -4.8530 0.8372 16 6 5.0097 -4.4739 -0.3021 17 6 4.2155 -3.9405 -1.4677 18 6 4.8426 -3.8534 -2.7008 19 6 4.1654 -3.3595 -3.7977 20 6 2.8528 -2.9432 -3.6674 21 6 2.2201 -3.0348 -2.4466 22 6 2.8988 -3.5361 -1.3344 23 1 -0.4850 0.8400 0.0004 24 1 1.1602 -2.5287 2.1515 25 1 -0.2929 -1.8691 1.3631 26 1 -0.6750 -4.0832 2.2231 27 1 -0.7464 -4.1183 0.5621 28 1 3.6308 -2.7597 1.1465 29 1 2.4803 -3.8715 1.9332 30 1 4.6302 -5.0173 1.7520 31 1 3.5133 -5.7587 0.5763 32 1 5.5686 -5.3552 -0.6169 33 1 5.7046 -3.7088 0.0439 34 1 5.8688 -4.1738 -2.8040 35 1 4.6611 -3.2943 -4.7551 36 1 2.3231 -2.5503 -4.5226 37 1 1.1937 -2.7131 -2.3488 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261315892.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:31 Heat of formation + Delta-G solvation = 29.406777 kcal Electronic energy + Delta-G solvation = -18653.855293 eV Core-core repulsion = 16009.450598 eV Total energy + Delta-G solvation = -2644.404695 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.78551 -36.50342 -34.56675 -32.50056 -32.28590 -29.53676 -28.93856 -27.23741 -24.30454 -23.75038 -22.47119 -21.69659 -19.43031 -18.71941 -16.67692 -16.29437 -15.36833 -14.92876 -14.76653 -14.36914 -13.79658 -13.68175 -13.06518 -12.86053 -12.70920 -12.38377 -12.22287 -11.94507 -11.79044 -11.33538 -11.05653 -10.99696 -10.74883 -10.58517 -10.25091 -10.18979 -9.93859 -9.70362 -9.38145 -8.68849 -8.53622 -7.95788 -7.63386 -6.64760 -6.10409 -4.25016 2.17597 2.30681 3.22522 3.29428 3.33478 4.31533 4.50394 5.00700 5.12719 5.30530 5.44385 5.62053 5.66424 5.72088 5.76186 5.93916 6.08103 6.15459 6.28896 6.35228 6.41299 6.49055 6.65862 6.67172 6.79678 6.83597 6.84583 7.09687 7.18636 7.29331 7.35700 7.46625 7.66997 7.79113 7.94378 8.02249 8.31087 8.33665 8.49004 8.85197 9.42597 10.87157 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017682 B = 0.010702 C = 0.008545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.128354 B = 2615.702781 C = 3276.115716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.072 3.928 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.059 0.941 9 C 0.219 3.781 10 H 0.051 0.949 11 C 0.067 3.933 12 N -0.847 5.847 13 N -0.475 5.475 14 C 0.068 3.932 15 C -0.122 4.122 16 C -0.069 4.069 17 C -0.151 4.151 18 C -0.100 4.100 19 C -0.176 4.176 20 C -0.103 4.103 21 C -0.139 4.139 22 C 0.175 3.825 23 H 0.263 0.737 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.317 0.683 27 H 0.330 0.670 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.717 -6.459 -0.828 8.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.077 0.923 9 C 0.115 3.885 10 H 0.069 0.931 11 C -0.064 4.064 12 N -0.373 5.373 13 N -0.185 5.185 14 C -0.059 4.059 15 C -0.160 4.160 16 C -0.106 4.106 17 C -0.155 4.155 18 C -0.119 4.119 19 C -0.196 4.196 20 C -0.122 4.122 21 C -0.160 4.160 22 C 0.073 3.927 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.126 0.874 27 H 0.141 0.859 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.983 -7.018 -0.728 8.638 hybrid contribution -0.089 2.276 -0.046 2.279 sum 4.894 -4.741 -0.774 6.858 Atomic orbital electron populations 1.69883 1.05866 1.26971 1.49935 1.24877 0.94798 0.99091 0.94354 0.86602 0.79942 0.83295 0.78359 1.20459 1.21167 1.19879 1.21590 0.93257 0.90896 1.51837 0.92273 1.19510 0.89842 0.84653 0.94481 0.93130 1.22055 0.97893 0.87687 0.98727 1.58923 1.39154 1.33611 1.05660 1.58291 1.17244 1.43211 0.99770 1.21942 0.93606 0.96788 0.93518 1.21725 0.97260 0.99476 0.97559 1.20394 0.97016 0.99548 0.93677 1.19386 0.93317 1.07347 0.95402 1.20693 0.98551 1.00203 0.92422 1.20677 0.95584 1.05314 0.98006 1.20802 0.94915 0.99496 0.96983 1.21168 1.01142 1.01706 0.91946 1.18630 0.90129 0.92274 0.91695 0.92712 0.93204 0.92729 0.87352 0.85879 0.93610 0.90020 0.91926 0.91295 0.91921 0.91873 0.87555 0.87606 0.87270 0.85578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.91 11.77 55.43 0.65 -23.26 16 2 C 0.07 1.89 5.33 -17.82 -0.10 1.80 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -13.90 6.76 -34.44 -0.23 -14.13 16 8 H 0.06 1.61 6.61 -52.49 -0.35 1.26 16 9 C 0.22 5.17 1.49 -68.86 -0.10 5.07 16 10 H 0.05 1.31 5.98 -51.93 -0.31 1.00 16 11 C 0.07 1.48 5.35 -3.83 -0.02 1.46 16 12 N -0.85 -15.80 9.30 -10.37 -0.10 -15.89 16 13 N -0.47 -10.19 4.27 -165.06 -0.71 -10.89 16 14 C 0.07 1.34 4.70 -3.89 -0.02 1.32 16 15 C -0.12 -2.01 6.19 -26.52 -0.16 -2.17 16 16 C -0.07 -1.13 5.81 -27.81 -0.16 -1.29 16 17 C -0.15 -2.90 5.74 -104.38 -0.60 -3.50 16 18 C -0.10 -1.75 9.63 -39.51 -0.38 -2.13 16 19 C -0.18 -3.07 10.05 -39.62 -0.40 -3.47 16 20 C -0.10 -1.95 10.04 -39.71 -0.40 -2.34 16 21 C -0.14 -2.98 8.59 -39.23 -0.34 -3.31 16 22 C 0.17 3.74 4.98 -83.85 -0.42 3.32 16 23 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 24 H 0.05 1.12 6.69 -51.93 -0.35 0.77 16 25 H 0.05 1.34 6.64 -51.93 -0.34 0.99 16 26 H 0.32 5.15 9.08 -39.29 -0.36 4.79 16 27 H 0.33 6.08 8.99 -39.29 -0.35 5.73 16 28 H 0.05 0.98 6.63 -51.93 -0.34 0.64 16 29 H 0.08 1.60 6.38 -51.93 -0.33 1.27 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 36 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 37 H 0.13 2.87 5.85 -52.49 -0.31 2.56 16 LS Contribution 288.74 15.07 4.35 4.35 Total: -1.00 -27.00 288.74 -9.28 -36.28 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -5.14 Total: 12.89 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -3.33 Total: -19.39 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.15 Total: -50.05 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.00 -9.28 -36.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261315892.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.686 kcal (2) G-P(sol) polarization free energy of solvation -26.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds