Wall clock time and date at job start Mon Mar 30 2020 03:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99822 * 2 1 4 4 H 1.48502 * 109.46905 * 270.00467 * 3 2 1 5 5 H 1.48496 * 109.46748 * 30.00112 * 3 2 1 6 6 H 1.48495 * 109.47428 * 150.00231 * 3 2 1 7 7 C 1.37880 * 120.00444 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99706 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99703 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47016 * 54.65896 * 9 7 2 11 11 C 1.52999 * 109.47099 * 294.65246 * 9 7 2 12 12 N 1.46892 * 109.46923 * 185.30700 * 11 9 7 13 13 N 1.46901 * 109.46755 * 174.65118 * 9 7 2 14 14 C 1.46436 * 110.99794 * 65.03777 * 13 9 7 15 15 C 1.53368 * 108.67384 * 181.01824 * 14 13 9 16 16 C 1.53044 * 107.94435 * 68.15969 * 15 14 13 17 17 C 1.50798 * 109.66215 * 312.63337 * 16 15 14 18 18 C 1.38613 * 118.13628 * 195.63624 * 17 16 15 19 19 C 1.38053 * 120.49004 * 180.66018 * 18 17 16 20 20 C 1.38318 * 119.88620 * 0.23729 * 19 18 17 21 21 C 1.37805 * 119.94939 * 359.34982 * 20 19 18 22 22 C 1.38378 * 122.00453 * 15.99379 * 17 16 15 23 23 H 0.96993 * 120.00236 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46738 * 305.30760 * 11 9 7 25 25 H 1.09001 * 109.46912 * 65.30522 * 11 9 7 26 26 H 1.00905 * 110.99815 * 180.02562 * 12 11 9 27 27 H 1.00902 * 110.99716 * 303.95253 * 12 11 9 28 28 H 1.09003 * 109.60048 * 300.77795 * 14 13 9 29 29 H 1.08996 * 109.59979 * 61.26063 * 14 13 9 30 30 H 1.09005 * 109.76611 * 187.76432 * 15 14 13 31 31 H 1.08994 * 109.77109 * 308.48752 * 15 14 13 32 32 H 1.09004 * 109.43585 * 192.57877 * 16 15 14 33 33 H 1.08998 * 109.44310 * 72.69776 * 16 15 14 34 34 H 1.08002 * 119.75197 * 0.63213 * 18 17 16 35 35 H 1.07999 * 120.05299 * 179.97438 * 19 18 17 36 36 H 1.07996 * 120.01858 * 179.59224 * 20 19 18 37 37 H 1.08000 * 119.78801 * 180.27380 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4404 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.5544 -2.5164 -0.8385 11 6 0.4756 -2.6403 1.3108 12 7 -0.1559 -3.9654 1.3659 13 7 2.2005 -3.6126 -0.1303 14 6 3.0780 -3.6930 1.0393 15 6 4.0607 -4.8530 0.8372 16 6 5.0097 -4.4739 -0.3021 17 6 4.2155 -3.9405 -1.4677 18 6 4.8426 -3.8534 -2.7008 19 6 4.1654 -3.3595 -3.7977 20 6 2.8528 -2.9432 -3.6674 21 6 2.2201 -3.0348 -2.4466 22 6 2.8988 -3.5361 -1.3344 23 1 -0.4850 0.8400 0.0004 24 1 1.1602 -2.5287 2.1515 25 1 -0.2929 -1.8691 1.3631 26 1 -0.6750 -4.0832 2.2231 27 1 -0.7464 -4.1183 0.5621 28 1 3.6308 -2.7597 1.1465 29 1 2.4803 -3.8715 1.9332 30 1 4.6302 -5.0173 1.7520 31 1 3.5133 -5.7587 0.5763 32 1 5.5686 -5.3552 -0.6169 33 1 5.7046 -3.7088 0.0439 34 1 5.8688 -4.1738 -2.8040 35 1 4.6611 -3.2943 -4.7551 36 1 2.3231 -2.5503 -4.5226 37 1 1.1937 -2.7131 -2.3488 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261315892.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:31 Heat of formation + Delta-G solvation = 12.261872 kcal Electronic energy + Delta-G solvation = -18654.598752 eV Core-core repulsion = 16009.450598 eV Total energy + Delta-G solvation = -2645.148154 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.32134 -38.09636 -36.11301 -34.22336 -34.05895 -30.98870 -30.47884 -29.00249 -26.09077 -25.38451 -23.92997 -23.25016 -21.13067 -20.21601 -18.56623 -17.90204 -16.95883 -16.62484 -16.38197 -15.97503 -15.42572 -15.23934 -14.65247 -14.37354 -14.14657 -14.06006 -13.86930 -13.52127 -13.38457 -12.95475 -12.91443 -12.75064 -12.27933 -12.21398 -11.89067 -11.80376 -11.65734 -11.26982 -11.06680 -10.55011 -10.31957 -9.41782 -9.29876 -8.40365 -7.97511 -6.31923 0.69581 0.81405 1.32884 1.35803 1.43793 2.35435 2.98713 3.08713 3.45011 3.94730 4.06171 4.10704 4.22861 4.32444 4.37041 4.58424 4.65179 4.72844 4.77863 4.87488 4.90343 5.02276 5.08992 5.13757 5.21007 5.31189 5.39760 5.44063 5.52292 5.66194 5.73382 5.80812 5.87223 6.06966 6.19017 6.38356 6.48741 6.77948 6.90546 6.93201 7.37533 8.83905 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017682 B = 0.010702 C = 0.008545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.128354 B = 2615.702781 C = 3276.115716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.030 3.970 3 Si 0.942 3.058 4 H -0.280 1.280 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.042 0.958 9 C 0.229 3.771 10 H 0.019 0.981 11 C 0.084 3.916 12 N -0.836 5.836 13 N -0.477 5.477 14 C 0.068 3.932 15 C -0.113 4.113 16 C -0.068 4.068 17 C -0.161 4.161 18 C -0.100 4.100 19 C -0.170 4.170 20 C -0.112 4.112 21 C -0.168 4.168 22 C 0.142 3.858 23 H 0.263 0.737 24 H 0.044 0.956 25 H 0.027 0.973 26 H 0.334 0.666 27 H 0.333 0.667 28 H 0.021 0.979 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.126 0.874 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.004 -7.439 -1.177 10.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.171 4.171 3 Si 0.768 3.232 4 H -0.206 1.206 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.060 0.940 9 C 0.124 3.876 10 H 0.037 0.963 11 C -0.048 4.048 12 N -0.364 5.364 13 N -0.188 5.188 14 C -0.058 4.058 15 C -0.151 4.151 16 C -0.105 4.105 17 C -0.164 4.164 18 C -0.118 4.118 19 C -0.189 4.189 20 C -0.131 4.131 21 C -0.189 4.189 22 C 0.041 3.959 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.146 0.854 27 H 0.144 0.856 28 H 0.040 0.960 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.144 0.856 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.274 -8.015 -1.077 10.877 hybrid contribution -0.770 2.539 -0.015 2.653 sum 6.504 -5.476 -1.092 8.573 Atomic orbital electron populations 1.69980 1.06747 1.27424 1.50751 1.25487 0.95505 1.01644 0.94448 0.85797 0.78933 0.80359 0.78085 1.20610 1.20464 1.19786 1.21673 0.92468 0.92258 1.51273 0.93951 1.19200 0.89859 0.84840 0.93727 0.96312 1.21691 0.96960 0.88416 0.97706 1.58799 1.39622 1.31239 1.06754 1.58292 1.17653 1.42203 1.00637 1.21960 0.93866 0.97248 0.92747 1.21692 0.96658 0.97508 0.99240 1.20477 0.96730 1.00854 0.92422 1.19851 0.92570 1.06598 0.97427 1.21157 1.00109 0.98983 0.91543 1.21112 0.94702 1.03454 0.99665 1.21074 0.96030 0.99472 0.96516 1.21126 1.00337 1.03725 0.93684 1.18889 0.91589 0.94042 0.91331 0.92757 0.93735 0.95479 0.85403 0.85569 0.96030 0.90481 0.88895 0.91537 0.88805 0.91218 0.83875 0.84086 0.85641 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.56 11.77 21.45 0.25 -50.31 16 2 C 0.03 1.61 5.33 84.66 0.45 2.06 16 3 Si 0.94 43.58 29.54 68.60 2.03 45.61 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -28.80 6.76 25.60 0.17 -28.63 16 8 H 0.04 2.37 6.61 -2.91 -0.02 2.36 16 9 C 0.23 11.26 1.49 44.17 0.07 11.32 16 10 H 0.02 1.05 5.98 -2.39 -0.01 1.04 16 11 C 0.08 3.82 5.35 86.30 0.46 4.28 16 12 N -0.84 -31.50 9.30 -186.73 -1.74 -33.24 16 13 N -0.48 -20.89 4.27 -676.13 -2.89 -23.78 16 14 C 0.07 2.67 4.70 86.51 0.41 3.08 16 15 C -0.11 -3.46 6.19 30.73 0.19 -3.26 16 16 C -0.07 -2.00 5.81 29.89 0.17 -1.82 16 17 C -0.16 -5.88 5.74 -19.71 -0.11 -5.99 16 18 C -0.10 -3.15 9.63 22.32 0.21 -2.94 16 19 C -0.17 -5.43 10.05 22.24 0.22 -5.21 16 20 C -0.11 -4.17 10.04 22.19 0.22 -3.95 16 21 C -0.17 -7.42 8.59 22.50 0.19 -7.23 16 22 C 0.14 6.14 4.98 38.30 0.19 6.34 16 23 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 24 H 0.04 2.05 6.69 -2.39 -0.02 2.04 16 25 H 0.03 1.38 6.64 -2.39 -0.02 1.37 16 26 H 0.33 10.72 9.08 -89.69 -0.81 9.91 16 27 H 0.33 12.50 8.99 -89.69 -0.81 11.70 16 28 H 0.02 0.94 6.63 -2.39 -0.02 0.92 16 29 H 0.08 3.02 6.38 -2.39 -0.02 3.01 16 30 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 35 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 36 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 37 H 0.10 4.73 5.85 -2.91 -0.02 4.71 16 Total: -1.00 -59.78 288.74 -0.02 -59.80 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: -0.53 Total: 33.87 kcal Atomic # 6 Polarization: -34.81 SS G_CDS: 2.85 Total: -31.95 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -4.37 Total: -107.33 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -59.78 -0.02 -59.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261315892.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.064 kcal (2) G-P(sol) polarization free energy of solvation -59.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds