Wall clock time and date at job start Mon Mar 30 2020 03:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00224 * 2 1 4 4 H 1.48494 * 109.47675 * 239.99976 * 3 2 1 5 5 H 1.48504 * 109.46897 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47005 * 119.99415 * 3 2 1 7 7 C 1.37874 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00190 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47297 * 304.96593 * 9 7 2 11 11 C 1.53007 * 109.47047 * 64.96000 * 9 7 2 12 12 N 1.46895 * 109.46975 * 175.48856 * 11 9 7 13 13 N 1.46903 * 109.47523 * 184.96105 * 9 7 2 14 14 C 1.46425 * 110.99703 * 295.54339 * 13 9 7 15 15 C 1.53378 * 108.67968 * 178.95055 * 14 13 9 16 16 C 1.53038 * 107.94112 * 291.84594 * 15 14 13 17 17 C 1.50804 * 109.65488 * 47.39714 * 16 15 14 18 18 C 1.38612 * 118.12733 * 164.57587 * 17 16 15 19 19 C 1.38051 * 120.48449 * 179.69364 * 18 17 16 20 20 C 1.38307 * 119.88748 * 359.39578 * 19 18 17 21 21 C 1.37811 * 119.95674 * 0.43368 * 20 19 18 22 22 C 1.38372 * 122.00230 * 343.96028 * 17 16 15 23 23 H 0.97002 * 120.00329 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47008 * 295.48930 * 11 9 7 25 25 H 1.08999 * 109.47043 * 55.48861 * 11 9 7 26 26 H 1.00902 * 110.99704 * 174.28648 * 12 11 9 27 27 H 1.00897 * 111.00772 * 298.23770 * 12 11 9 28 28 H 1.08997 * 109.60057 * 59.19666 * 14 13 9 29 29 H 1.08993 * 109.60590 * 298.71136 * 14 13 9 30 30 H 1.09003 * 109.76191 * 172.23812 * 15 14 13 31 31 H 1.08991 * 109.77205 * 51.45934 * 15 14 13 32 32 H 1.09004 * 109.44289 * 287.34056 * 16 15 14 33 33 H 1.09007 * 109.44249 * 167.45053 * 16 15 14 34 34 H 1.08007 * 119.75882 * 359.40927 * 18 17 16 35 35 H 1.07997 * 120.05594 * 179.68034 * 19 18 17 36 36 H 1.07999 * 120.02376 * 180.45583 * 20 19 18 37 37 H 1.08002 * 119.79240 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.5590 -2.5192 0.8424 11 6 0.4678 -2.6358 -1.3067 12 7 -0.1797 -3.9536 -1.3541 13 7 2.2010 -3.6131 0.1209 14 6 3.0806 -3.6812 -1.0477 15 6 4.0644 -4.8420 -0.8551 16 6 5.0108 -4.4729 0.2895 17 6 4.2135 -3.9526 1.4590 18 6 4.8399 -3.8726 2.6930 19 6 4.1577 -3.3975 3.7952 20 6 2.8434 -2.9859 3.6675 21 6 2.2152 -3.0593 2.4432 22 6 2.8968 -3.5481 1.3271 23 1 -0.4851 0.8400 -0.0004 24 1 -0.2917 -1.8558 -1.3585 25 1 1.1497 -2.5355 -2.1511 26 1 -0.7779 -4.0336 -2.1627 27 1 0.5054 -4.6940 -1.3365 28 1 3.6326 -2.7464 -1.1449 29 1 2.4849 -3.8517 -1.9444 30 1 4.6357 -4.9966 -1.7705 31 1 3.5178 -5.7506 -0.6030 32 1 5.7050 -3.7030 -0.0476 33 1 5.5708 -5.3563 0.5965 34 1 5.8677 -4.1886 2.7940 35 1 4.6508 -3.3430 4.7544 36 1 2.3100 -2.6070 4.5267 37 1 1.1890 -2.7368 2.3465 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261315893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:33 Heat of formation + Delta-G solvation = 29.844166 kcal Electronic energy + Delta-G solvation = -18668.330912 eV Core-core repulsion = 16023.945184 eV Total energy + Delta-G solvation = -2644.385728 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.88294 -36.60333 -34.59029 -32.50965 -32.30611 -29.62358 -28.95200 -27.32260 -24.37364 -23.74014 -22.54646 -21.79297 -19.39522 -18.81198 -16.76435 -16.25543 -15.42128 -15.03110 -14.68846 -14.50794 -13.88514 -13.68701 -13.22149 -12.98348 -12.84482 -12.58498 -12.26343 -11.94996 -11.72254 -11.14307 -11.12993 -10.88460 -10.71307 -10.55494 -10.35587 -10.27317 -10.01466 -9.85633 -9.46559 -8.71651 -8.53006 -7.99621 -7.65071 -6.73799 -6.09317 -4.22830 2.13367 2.25637 3.24728 3.29661 3.33645 4.32708 4.45316 4.90642 5.14507 5.21021 5.32282 5.51176 5.60382 5.72252 5.72930 5.85058 5.98354 6.06363 6.18971 6.26765 6.29276 6.43019 6.51848 6.59932 6.67279 6.72656 6.79514 7.05351 7.14472 7.26138 7.44541 7.51611 7.62325 7.77061 7.92076 8.06785 8.32666 8.37137 8.40859 8.85148 9.44678 10.90726 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.010678 C = 0.008539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.876579 B = 2621.607569 C = 3278.175479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.073 3.927 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.057 0.943 9 C 0.220 3.780 10 H 0.062 0.938 11 C 0.071 3.929 12 N -0.850 5.850 13 N -0.490 5.490 14 C 0.061 3.939 15 C -0.124 4.124 16 C -0.069 4.069 17 C -0.150 4.150 18 C -0.101 4.101 19 C -0.172 4.172 20 C -0.104 4.104 21 C -0.134 4.134 22 C 0.175 3.825 23 H 0.264 0.736 24 H 0.096 0.904 25 H 0.003 0.997 26 H 0.318 0.682 27 H 0.331 0.669 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.284 -7.079 0.177 9.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.131 4.131 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.075 0.925 9 C 0.116 3.884 10 H 0.080 0.920 11 C -0.060 4.060 12 N -0.378 5.378 13 N -0.202 5.202 14 C -0.066 4.066 15 C -0.162 4.162 16 C -0.106 4.106 17 C -0.153 4.153 18 C -0.120 4.120 19 C -0.192 4.192 20 C -0.122 4.122 21 C -0.154 4.154 22 C 0.073 3.927 23 H 0.074 0.926 24 H 0.114 0.886 25 H 0.021 0.979 26 H 0.128 0.872 27 H 0.144 0.856 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.452 -7.137 0.758 9.013 hybrid contribution 1.391 1.608 -0.893 2.306 sum 6.843 -5.528 -0.135 8.798 Atomic orbital electron populations 1.69890 1.05759 1.27068 1.49309 1.24874 0.94797 0.98997 0.94387 0.86688 0.79745 0.83110 0.78776 1.20316 1.21135 1.20080 1.21531 0.93068 0.91039 1.52487 0.92480 1.19572 0.89195 0.84189 0.95429 0.92011 1.22097 0.97531 0.89648 0.96678 1.58816 1.26325 1.05676 1.47002 1.58479 1.17480 1.44280 0.99953 1.21992 0.93958 0.97606 0.93052 1.21747 0.97402 0.99166 0.97841 1.20380 0.96962 0.99760 0.93472 1.19375 0.93281 1.07284 0.95379 1.20688 0.98569 1.00393 0.92366 1.20704 0.95488 1.05047 0.97948 1.20829 0.94905 0.99480 0.97035 1.21239 1.01311 1.01133 0.91744 1.18507 0.90182 0.92684 0.91282 0.92574 0.88598 0.97900 0.87194 0.85642 0.92886 0.91197 0.91759 0.91302 0.91763 0.91756 0.87491 0.87511 0.87115 0.85225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.10 11.74 55.43 0.65 -23.45 16 2 C 0.07 1.94 5.33 -17.82 -0.09 1.84 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.54 -14.09 6.80 -34.44 -0.23 -14.33 16 8 H 0.06 1.54 6.59 -52.48 -0.35 1.20 16 9 C 0.22 5.25 1.55 -68.86 -0.11 5.14 16 10 H 0.06 1.67 5.94 -51.93 -0.31 1.36 16 11 C 0.07 1.60 5.47 -3.82 -0.02 1.58 16 12 N -0.85 -16.45 9.56 -10.37 -0.10 -16.55 16 13 N -0.49 -10.27 3.82 -165.06 -0.63 -10.90 16 14 C 0.06 1.13 4.49 -3.89 -0.02 1.12 16 15 C -0.12 -1.89 6.19 -26.52 -0.16 -2.05 16 16 C -0.07 -1.07 5.81 -27.81 -0.16 -1.23 16 17 C -0.15 -2.80 5.74 -104.38 -0.60 -3.40 16 18 C -0.10 -1.74 9.63 -39.51 -0.38 -2.12 16 19 C -0.17 -2.96 10.05 -39.62 -0.40 -3.36 16 20 C -0.10 -1.94 10.03 -39.71 -0.40 -2.34 16 21 C -0.13 -2.86 8.62 -39.22 -0.34 -3.20 16 22 C 0.17 3.68 4.99 -83.85 -0.42 3.26 16 23 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.10 2.44 6.58 -51.93 -0.34 2.09 16 25 H 0.00 0.06 6.64 -51.93 -0.34 -0.28 16 26 H 0.32 5.36 9.08 -39.29 -0.36 5.00 16 27 H 0.33 6.07 7.67 -39.29 -0.30 5.77 16 28 H 0.05 1.10 6.60 -51.93 -0.34 0.76 16 29 H 0.07 1.26 5.96 -51.93 -0.31 0.95 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 35 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.13 2.99 5.83 -52.49 -0.31 2.69 16 LS Contribution 286.63 15.07 4.32 4.32 Total: -1.00 -27.32 286.63 -9.17 -36.48 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -5.05 Total: 13.25 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -3.33 Total: -19.09 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.08 Total: -50.91 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.32 -9.17 -36.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261315893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.328 kcal (2) G-P(sol) polarization free energy of solvation -27.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds