Wall clock time and date at job start Mon Mar 30 2020 03:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00224 * 2 1 4 4 H 1.48494 * 109.47675 * 239.99976 * 3 2 1 5 5 H 1.48504 * 109.46897 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47005 * 119.99415 * 3 2 1 7 7 C 1.37874 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00190 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47297 * 304.96593 * 9 7 2 11 11 C 1.53007 * 109.47047 * 64.96000 * 9 7 2 12 12 N 1.46895 * 109.46975 * 175.48856 * 11 9 7 13 13 N 1.46903 * 109.47523 * 184.96105 * 9 7 2 14 14 C 1.46425 * 110.99703 * 295.54339 * 13 9 7 15 15 C 1.53378 * 108.67968 * 178.95055 * 14 13 9 16 16 C 1.53038 * 107.94112 * 291.84594 * 15 14 13 17 17 C 1.50804 * 109.65488 * 47.39714 * 16 15 14 18 18 C 1.38612 * 118.12733 * 164.57587 * 17 16 15 19 19 C 1.38051 * 120.48449 * 179.69364 * 18 17 16 20 20 C 1.38307 * 119.88748 * 359.39578 * 19 18 17 21 21 C 1.37811 * 119.95674 * 0.43368 * 20 19 18 22 22 C 1.38372 * 122.00230 * 343.96028 * 17 16 15 23 23 H 0.97002 * 120.00329 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47008 * 295.48930 * 11 9 7 25 25 H 1.08999 * 109.47043 * 55.48861 * 11 9 7 26 26 H 1.00902 * 110.99704 * 174.28648 * 12 11 9 27 27 H 1.00897 * 111.00772 * 298.23770 * 12 11 9 28 28 H 1.08997 * 109.60057 * 59.19666 * 14 13 9 29 29 H 1.08993 * 109.60590 * 298.71136 * 14 13 9 30 30 H 1.09003 * 109.76191 * 172.23812 * 15 14 13 31 31 H 1.08991 * 109.77205 * 51.45934 * 15 14 13 32 32 H 1.09004 * 109.44289 * 287.34056 * 16 15 14 33 33 H 1.09007 * 109.44249 * 167.45053 * 16 15 14 34 34 H 1.08007 * 119.75882 * 359.40927 * 18 17 16 35 35 H 1.07997 * 120.05594 * 179.68034 * 19 18 17 36 36 H 1.07999 * 120.02376 * 180.45583 * 20 19 18 37 37 H 1.08002 * 119.79240 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.5590 -2.5192 0.8424 11 6 0.4678 -2.6358 -1.3067 12 7 -0.1797 -3.9536 -1.3541 13 7 2.2010 -3.6131 0.1209 14 6 3.0806 -3.6812 -1.0477 15 6 4.0644 -4.8420 -0.8551 16 6 5.0108 -4.4729 0.2895 17 6 4.2135 -3.9526 1.4590 18 6 4.8399 -3.8726 2.6930 19 6 4.1577 -3.3975 3.7952 20 6 2.8434 -2.9859 3.6675 21 6 2.2152 -3.0593 2.4432 22 6 2.8968 -3.5481 1.3271 23 1 -0.4851 0.8400 -0.0004 24 1 -0.2917 -1.8558 -1.3585 25 1 1.1497 -2.5355 -2.1511 26 1 -0.7779 -4.0336 -2.1627 27 1 0.5054 -4.6940 -1.3365 28 1 3.6326 -2.7464 -1.1449 29 1 2.4849 -3.8517 -1.9444 30 1 4.6357 -4.9966 -1.7705 31 1 3.5178 -5.7506 -0.6030 32 1 5.7050 -3.7030 -0.0476 33 1 5.5708 -5.3563 0.5965 34 1 5.8677 -4.1886 2.7940 35 1 4.6508 -3.3430 4.7544 36 1 2.3100 -2.6070 4.5267 37 1 1.1890 -2.7368 2.3465 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261315893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:32 Heat of formation + Delta-G solvation = 12.440594 kcal Electronic energy + Delta-G solvation = -18669.085587 eV Core-core repulsion = 16023.945184 eV Total energy + Delta-G solvation = -2645.140404 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.39171 -38.17695 -36.10381 -34.25763 -34.07366 -31.03436 -30.47985 -29.08530 -26.13610 -25.38364 -23.95143 -23.34161 -21.09706 -20.26192 -18.59261 -17.92773 -16.97549 -16.68754 -16.32507 -16.06112 -15.56184 -15.30724 -14.73872 -14.43234 -14.33941 -14.10434 -13.82100 -13.52928 -13.25692 -12.91995 -12.90566 -12.53874 -12.27376 -12.21809 -12.08152 -11.84999 -11.65807 -11.38754 -11.08849 -10.59695 -10.34205 -9.43648 -9.32547 -8.43111 -8.01728 -6.31625 0.67452 0.78131 1.34264 1.36334 1.43045 2.35981 2.95092 3.09838 3.39189 3.90635 4.00738 4.09947 4.19393 4.28754 4.34361 4.54787 4.63095 4.67672 4.71366 4.82685 4.84719 4.97968 5.01765 5.06434 5.17700 5.28857 5.35483 5.47874 5.50526 5.64564 5.72526 5.81714 5.86540 6.04365 6.15852 6.36847 6.55029 6.78383 6.83972 6.92937 7.38035 8.86143 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.010678 C = 0.008539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.876579 B = 2621.607569 C = 3278.175479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.029 3.971 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.043 0.957 9 C 0.231 3.769 10 H 0.021 0.979 11 C 0.086 3.914 12 N -0.848 5.848 13 N -0.490 5.490 14 C 0.059 3.941 15 C -0.114 4.114 16 C -0.068 4.068 17 C -0.157 4.157 18 C -0.101 4.101 19 C -0.167 4.167 20 C -0.114 4.114 21 C -0.166 4.166 22 C 0.143 3.857 23 H 0.264 0.736 24 H 0.065 0.935 25 H 0.004 0.996 26 H 0.335 0.665 27 H 0.341 0.659 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.125 0.875 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.900 -8.231 0.238 12.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.172 4.172 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.062 0.938 9 C 0.126 3.874 10 H 0.039 0.961 11 C -0.045 4.045 12 N -0.378 5.378 13 N -0.202 5.202 14 C -0.067 4.067 15 C -0.152 4.152 16 C -0.105 4.105 17 C -0.160 4.160 18 C -0.119 4.119 19 C -0.186 4.186 20 C -0.132 4.132 21 C -0.187 4.187 22 C 0.042 3.958 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.022 0.978 26 H 0.147 0.853 27 H 0.154 0.846 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.143 0.857 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.078 -8.309 0.816 11.617 hybrid contribution 0.607 1.917 -0.829 2.175 sum 8.685 -6.392 -0.013 10.784 Atomic orbital electron populations 1.70006 1.06809 1.27516 1.50313 1.25524 0.95493 1.01745 0.94453 0.85839 0.78666 0.79996 0.78575 1.19620 1.20595 1.20485 1.21643 0.92413 0.92305 1.51736 0.93836 1.19195 0.89262 0.84710 0.94273 0.96103 1.21709 0.96482 0.90305 0.96009 1.58654 1.26543 1.04438 1.48195 1.58445 1.17906 1.42868 1.00976 1.22062 0.94274 0.98106 0.92275 1.21728 0.96699 0.97311 0.99432 1.20484 0.96727 1.01089 0.92220 1.19852 0.92397 1.06308 0.97476 1.21172 1.00165 0.99058 0.91494 1.21133 0.94520 1.03226 0.99702 1.21083 0.96108 0.99550 0.96482 1.21170 1.00335 1.03455 0.93697 1.18765 0.91675 0.94434 0.90876 0.92693 0.91688 0.97815 0.85259 0.84579 0.95480 0.90931 0.88550 0.91022 0.91147 0.88583 0.83705 0.84002 0.85669 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.53 11.74 21.45 0.25 -51.28 16 2 C 0.03 1.57 5.33 84.65 0.45 2.02 16 3 Si 0.94 43.76 29.54 68.60 2.03 45.79 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 7 C -0.54 -29.20 6.80 25.60 0.17 -29.03 16 8 H 0.04 2.42 6.59 -2.91 -0.02 2.40 16 9 C 0.23 11.53 1.55 44.17 0.07 11.59 16 10 H 0.02 1.22 5.94 -2.39 -0.01 1.21 16 11 C 0.09 4.02 5.47 86.31 0.47 4.50 16 12 N -0.85 -33.14 9.56 -186.72 -1.79 -34.93 16 13 N -0.49 -20.94 3.82 -676.13 -2.58 -23.52 16 14 C 0.06 2.18 4.49 86.52 0.39 2.57 16 15 C -0.11 -3.16 6.19 30.73 0.19 -2.97 16 16 C -0.07 -1.88 5.81 29.89 0.17 -1.71 16 17 C -0.16 -5.55 5.74 -19.71 -0.11 -5.67 16 18 C -0.10 -3.10 9.63 22.31 0.21 -2.89 16 19 C -0.17 -5.26 10.05 22.24 0.22 -5.04 16 20 C -0.11 -4.23 10.03 22.18 0.22 -4.01 16 21 C -0.17 -7.39 8.62 22.50 0.19 -7.20 16 22 C 0.14 6.07 4.99 38.30 0.19 6.26 16 23 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 24 H 0.06 3.45 6.58 -2.39 -0.02 3.43 16 25 H 0.00 0.17 6.64 -2.39 -0.02 0.16 16 26 H 0.34 11.18 9.08 -89.69 -0.81 10.37 16 27 H 0.34 12.38 7.67 -89.70 -0.69 11.69 16 28 H 0.03 1.13 6.60 -2.39 -0.02 1.11 16 29 H 0.07 2.57 5.96 -2.39 -0.01 2.55 16 30 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 35 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 36 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 37 H 0.09 4.79 5.83 -2.91 -0.02 4.77 16 Total: -1.00 -61.57 286.63 0.35 -61.22 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: -0.41 Total: 34.28 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: 2.85 Total: -31.56 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -4.12 Total: -109.72 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -61.57 0.35 -61.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261315893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.658 kcal (2) G-P(sol) polarization free energy of solvation -61.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds