Wall clock time and date at job start Mon Mar 30 2020 03:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99856 * 2 1 4 4 H 1.48492 * 109.47004 * 239.99795 * 3 2 1 5 5 H 1.48496 * 109.46983 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46818 * 119.99768 * 3 2 1 7 7 C 1.37877 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99801 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.47738 * 300.00463 * 9 7 2 11 11 N 1.46898 * 109.46973 * 60.00734 * 9 7 2 12 12 C 1.53002 * 109.46832 * 179.97438 * 9 7 2 13 13 N 1.46901 * 109.46955 * 185.00002 * 12 9 7 14 14 C 1.46427 * 110.99834 * 167.22512 * 13 12 9 15 15 C 1.53387 * 108.66302 * 72.19292 * 14 13 12 16 16 C 1.53046 * 107.92735 * 68.23266 * 15 14 13 17 17 C 1.50804 * 109.65704 * 312.69093 * 16 15 14 18 18 C 1.38618 * 118.12603 * 195.76057 * 17 16 15 19 19 C 1.38047 * 120.48711 * 180.71336 * 18 17 16 20 20 C 1.38316 * 119.88596 * 359.39046 * 19 18 17 21 21 C 1.37807 * 119.95380 * 0.15709 * 20 19 18 22 22 C 1.38372 * 122.01456 * 15.66407 * 17 16 15 23 23 H 0.97004 * 120.00018 * 0.02562 * 1 2 3 24 24 H 1.00895 * 111.00577 * 59.99019 * 11 9 7 25 25 H 1.00899 * 111.00411 * 183.95248 * 11 9 7 26 26 H 1.09002 * 109.46770 * 65.00374 * 12 9 7 27 27 H 1.08996 * 109.47536 * 305.00419 * 12 9 7 28 28 H 1.08997 * 109.60758 * 191.94442 * 14 13 12 29 29 H 1.09001 * 109.60634 * 312.28003 * 14 13 12 30 30 H 1.08996 * 109.77320 * 187.83739 * 15 14 13 31 31 H 1.09000 * 109.76792 * 308.57174 * 15 14 13 32 32 H 1.09000 * 109.44257 * 72.75013 * 16 15 14 33 33 H 1.09000 * 109.43664 * 192.67501 * 16 15 14 34 34 H 1.08003 * 119.75624 * 0.42299 * 18 17 16 35 35 H 1.08002 * 120.05904 * 179.67613 * 19 18 17 36 36 H 1.08008 * 120.01933 * 180.12973 * 20 19 18 37 37 H 1.08000 * 119.78677 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8895 11 7 0.4062 -2.5767 -1.1997 12 6 2.2453 -3.6621 -0.0018 13 7 1.5147 -4.9308 -0.1225 14 6 2.4268 -6.0344 -0.4293 15 6 3.2519 -6.3521 0.8242 16 6 2.3073 -6.9452 1.8721 17 6 1.0657 -6.0956 1.9747 18 6 0.2479 -6.2644 3.0812 19 6 -0.9084 -5.5227 3.2172 20 6 -1.2496 -4.5945 2.2501 21 6 -0.4367 -4.4146 1.1520 22 6 0.7312 -5.1655 1.0064 23 1 -0.4850 0.8401 -0.0004 24 1 0.9638 -2.5250 -2.0390 25 1 -0.1578 -3.4133 -1.1913 26 1 2.8122 -3.6564 0.9292 27 1 2.9288 -3.5548 -0.8440 28 1 1.8523 -6.9134 -0.7213 29 1 3.0910 -5.7445 -1.2434 30 1 4.0311 -7.0739 0.5796 31 1 3.7040 -5.4381 1.2094 32 1 2.0307 -7.9581 1.5794 33 1 2.8092 -6.9715 2.8394 34 1 0.5150 -6.9849 3.8402 35 1 -1.5432 -5.6636 4.0795 36 1 -2.1527 -4.0115 2.3554 37 1 -0.7055 -3.6888 0.3987 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261351301.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:27 Heat of formation + Delta-G solvation = 38.103766 kcal Electronic energy + Delta-G solvation = -18380.895287 eV Core-core repulsion = 15736.867722 eV Total energy + Delta-G solvation = -2644.027565 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.30691 -36.67228 -35.06391 -32.79639 -30.99237 -29.98060 -29.42380 -26.93858 -25.19699 -23.71844 -22.76948 -21.58876 -20.46582 -18.71331 -16.60581 -16.24175 -15.77710 -15.19387 -14.54377 -14.32097 -14.20557 -13.82632 -13.61625 -13.19807 -12.83804 -12.59387 -12.23075 -11.98154 -11.92710 -11.64987 -11.30062 -10.99158 -10.85869 -10.66111 -10.46349 -10.44602 -10.23030 -9.64399 -8.98644 -8.81481 -8.39125 -8.15933 -7.41444 -6.80136 -5.81130 -3.94932 1.78557 1.86890 3.37587 3.42544 3.44361 4.11407 4.34588 4.55257 4.93132 4.96146 5.06742 5.30388 5.44378 5.49062 5.52366 5.61800 5.76083 5.81295 5.90960 5.97225 5.99715 6.13071 6.25123 6.26114 6.36964 6.52562 6.68276 6.75251 6.82496 6.90419 7.03838 7.30450 7.48125 7.67295 7.92171 7.95245 8.32335 8.79260 9.17720 9.31032 9.72934 11.23666 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025904 B = 0.007422 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.647633 B = 3771.650430 C = 4296.713280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.085 3.915 3 Si 0.881 3.119 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.049 0.951 9 C 0.222 3.778 10 H 0.049 0.951 11 N -0.808 5.808 12 C 0.030 3.970 13 N -0.502 5.502 14 C 0.058 3.942 15 C -0.158 4.158 16 C -0.072 4.072 17 C -0.131 4.131 18 C -0.116 4.116 19 C -0.142 4.142 20 C -0.112 4.112 21 C -0.111 4.111 22 C 0.121 3.879 23 H 0.255 0.745 24 H 0.314 0.686 25 H 0.302 0.698 26 H 0.029 0.971 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.870 -13.283 3.125 13.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.121 4.121 3 Si 0.709 3.291 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.067 0.933 9 C 0.112 3.888 10 H 0.066 0.934 11 N -0.336 5.336 12 C -0.097 4.097 13 N -0.218 5.218 14 C -0.070 4.070 15 C -0.197 4.197 16 C -0.109 4.109 17 C -0.133 4.133 18 C -0.135 4.135 19 C -0.160 4.160 20 C -0.131 4.131 21 C -0.130 4.130 22 C 0.024 3.976 23 H 0.065 0.935 24 H 0.125 0.875 25 H 0.115 0.885 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.076 -12.418 2.950 12.809 hybrid contribution 1.654 -0.036 0.477 1.721 sum 2.729 -12.454 3.427 13.202 Atomic orbital electron populations 1.70089 1.05574 1.25567 1.46763 1.24892 0.94602 0.98333 0.94304 0.86877 0.79779 0.84057 0.78363 1.20453 1.21375 1.20562 1.20824 0.92030 0.90392 1.54618 0.93309 1.19228 0.88900 0.89300 0.91419 0.93351 1.59237 1.28135 1.42082 1.04119 1.23366 0.98008 0.88801 0.99518 1.58784 1.24698 1.04405 1.33901 1.22169 0.94187 0.94062 0.96586 1.22190 0.98365 1.01669 0.97511 1.20435 0.93250 0.97835 0.99400 1.19847 0.97418 1.01278 0.94796 1.20790 0.95266 1.00215 0.97193 1.20943 0.97621 0.97981 0.99482 1.21009 0.99759 0.97909 0.94397 1.21749 0.92730 0.99111 0.99432 1.18502 0.94158 0.95930 0.89020 0.93534 0.87496 0.88501 0.95261 0.91582 0.90941 0.90472 0.91278 0.91250 0.91188 0.91182 0.87037 0.86813 0.86169 0.83086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.63 12.77 55.43 0.71 -23.93 16 2 C 0.09 2.40 5.39 -17.82 -0.10 2.30 16 3 Si 0.88 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.54 -14.84 8.73 -34.44 -0.30 -15.14 16 8 H 0.05 1.33 7.74 -52.49 -0.41 0.92 16 9 C 0.22 5.43 1.96 -68.86 -0.13 5.29 16 10 H 0.05 1.31 5.47 -51.93 -0.28 1.03 16 11 N -0.81 -19.03 8.17 -5.66 -0.05 -19.07 16 12 C 0.03 0.61 4.11 -3.82 -0.02 0.59 16 13 N -0.50 -8.99 3.82 -171.28 -0.65 -9.64 16 14 C 0.06 0.84 5.81 -3.88 -0.02 0.82 16 15 C -0.16 -2.10 6.03 -26.51 -0.16 -2.26 16 16 C -0.07 -0.95 5.81 -27.81 -0.16 -1.11 16 17 C -0.13 -2.11 5.74 -104.38 -0.60 -2.71 16 18 C -0.12 -1.73 9.63 -39.51 -0.38 -2.11 16 19 C -0.14 -2.15 10.05 -39.62 -0.40 -2.54 16 20 C -0.11 -1.92 10.03 -39.71 -0.40 -2.32 16 21 C -0.11 -2.14 7.40 -39.23 -0.29 -2.43 16 22 C 0.12 2.21 5.07 -83.85 -0.43 1.79 16 23 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.31 7.23 8.99 -39.29 -0.35 6.87 16 25 H 0.30 6.57 6.41 -39.29 -0.25 6.32 16 26 H 0.03 0.63 6.99 -51.93 -0.36 0.26 16 27 H 0.07 1.34 7.84 -51.93 -0.41 0.93 16 28 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 29 H 0.08 1.06 7.85 -51.93 -0.41 0.65 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.04 6.69 -51.93 -0.35 0.69 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.11 1.37 8.06 -52.48 -0.42 0.94 16 35 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16 37 H 0.15 3.23 4.30 -52.49 -0.23 3.01 16 LS Contribution 288.68 15.07 4.35 4.35 Total: -1.00 -29.18 288.68 -9.19 -38.36 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -5.14 Total: 13.32 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -3.38 Total: -19.82 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.01 Total: -52.64 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.18 -9.19 -38.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261351301.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.465 kcal (2) G-P(sol) polarization free energy of solvation -29.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds