Wall clock time and date at job start Mon Mar 30 2020 03:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99856 * 2 1 4 4 H 1.48492 * 109.47004 * 239.99795 * 3 2 1 5 5 H 1.48496 * 109.46983 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46818 * 119.99768 * 3 2 1 7 7 C 1.37877 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99801 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.47738 * 300.00463 * 9 7 2 11 11 N 1.46898 * 109.46973 * 60.00734 * 9 7 2 12 12 C 1.53002 * 109.46832 * 179.97438 * 9 7 2 13 13 N 1.46901 * 109.46955 * 185.00002 * 12 9 7 14 14 C 1.46427 * 110.99834 * 167.22512 * 13 12 9 15 15 C 1.53387 * 108.66302 * 72.19292 * 14 13 12 16 16 C 1.53046 * 107.92735 * 68.23266 * 15 14 13 17 17 C 1.50804 * 109.65704 * 312.69093 * 16 15 14 18 18 C 1.38618 * 118.12603 * 195.76057 * 17 16 15 19 19 C 1.38047 * 120.48711 * 180.71336 * 18 17 16 20 20 C 1.38316 * 119.88596 * 359.39046 * 19 18 17 21 21 C 1.37807 * 119.95380 * 0.15709 * 20 19 18 22 22 C 1.38372 * 122.01456 * 15.66407 * 17 16 15 23 23 H 0.97004 * 120.00018 * 0.02562 * 1 2 3 24 24 H 1.00895 * 111.00577 * 59.99019 * 11 9 7 25 25 H 1.00899 * 111.00411 * 183.95248 * 11 9 7 26 26 H 1.09002 * 109.46770 * 65.00374 * 12 9 7 27 27 H 1.08996 * 109.47536 * 305.00419 * 12 9 7 28 28 H 1.08997 * 109.60758 * 191.94442 * 14 13 12 29 29 H 1.09001 * 109.60634 * 312.28003 * 14 13 12 30 30 H 1.08996 * 109.77320 * 187.83739 * 15 14 13 31 31 H 1.09000 * 109.76792 * 308.57174 * 15 14 13 32 32 H 1.09000 * 109.44257 * 72.75013 * 16 15 14 33 33 H 1.09000 * 109.43664 * 192.67501 * 16 15 14 34 34 H 1.08003 * 119.75624 * 0.42299 * 18 17 16 35 35 H 1.08002 * 120.05904 * 179.67613 * 19 18 17 36 36 H 1.08008 * 120.01933 * 180.12973 * 20 19 18 37 37 H 1.08000 * 119.78677 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8895 11 7 0.4062 -2.5767 -1.1997 12 6 2.2453 -3.6621 -0.0018 13 7 1.5147 -4.9308 -0.1225 14 6 2.4268 -6.0344 -0.4293 15 6 3.2519 -6.3521 0.8242 16 6 2.3073 -6.9452 1.8721 17 6 1.0657 -6.0956 1.9747 18 6 0.2479 -6.2644 3.0812 19 6 -0.9084 -5.5227 3.2172 20 6 -1.2496 -4.5945 2.2501 21 6 -0.4367 -4.4146 1.1520 22 6 0.7312 -5.1655 1.0064 23 1 -0.4850 0.8401 -0.0004 24 1 0.9638 -2.5250 -2.0390 25 1 -0.1578 -3.4133 -1.1913 26 1 2.8122 -3.6564 0.9292 27 1 2.9288 -3.5548 -0.8440 28 1 1.8523 -6.9134 -0.7213 29 1 3.0910 -5.7445 -1.2434 30 1 4.0311 -7.0739 0.5796 31 1 3.7040 -5.4381 1.2094 32 1 2.0307 -7.9581 1.5794 33 1 2.8092 -6.9715 2.8394 34 1 0.5150 -6.9849 3.8402 35 1 -1.5432 -5.6636 4.0795 36 1 -2.1527 -4.0115 2.3554 37 1 -0.7055 -3.6888 0.3987 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261351301.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:27 Heat of formation + Delta-G solvation = 19.620771 kcal Electronic energy + Delta-G solvation = -18381.696770 eV Core-core repulsion = 15736.867722 eV Total energy + Delta-G solvation = -2644.829048 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.60632 -38.01695 -36.65923 -34.44758 -32.86287 -31.19521 -30.73036 -28.72993 -26.95455 -25.10681 -23.97062 -22.92129 -22.19399 -20.02236 -18.55805 -17.65017 -17.06086 -16.68203 -16.42316 -15.90294 -15.51869 -15.28287 -14.90538 -14.56019 -14.30036 -13.88008 -13.82221 -13.76509 -13.26974 -13.06296 -12.82292 -12.62849 -12.52872 -12.20380 -12.10531 -11.77502 -11.53954 -11.43318 -10.99596 -10.49048 -10.14726 -9.49064 -8.79265 -8.64198 -7.94438 -6.15348 0.50542 0.57556 1.43163 1.44095 1.51186 2.46393 2.80839 3.08292 3.30004 3.83267 3.86930 3.98769 4.11502 4.27391 4.34073 4.42409 4.49294 4.55265 4.64660 4.70000 4.80426 4.83227 4.90457 4.96118 4.99203 5.11079 5.23176 5.31648 5.50109 5.60162 5.67622 5.73679 5.78124 5.95368 6.17835 6.26393 6.59513 6.77271 7.23024 7.40882 7.56631 9.08919 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025904 B = 0.007422 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.647633 B = 3771.650430 C = 4296.713280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.036 3.964 3 Si 0.946 3.054 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.558 4.558 8 H 0.046 0.954 9 C 0.227 3.773 10 H 0.019 0.981 11 N -0.814 5.814 12 C 0.051 3.949 13 N -0.507 5.507 14 C 0.053 3.947 15 C -0.153 4.153 16 C -0.070 4.070 17 C -0.135 4.135 18 C -0.115 4.115 19 C -0.137 4.137 20 C -0.129 4.129 21 C -0.139 4.139 22 C 0.096 3.904 23 H 0.253 0.747 24 H 0.315 0.685 25 H 0.312 0.688 26 H 0.015 0.985 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.124 0.876 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.047 -15.072 4.074 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.168 4.168 3 Si 0.771 3.229 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.597 4.597 8 H 0.064 0.936 9 C 0.116 3.884 10 H 0.036 0.964 11 N -0.342 5.342 12 C -0.076 4.076 13 N -0.224 5.224 14 C -0.074 4.074 15 C -0.192 4.192 16 C -0.107 4.107 17 C -0.138 4.138 18 C -0.133 4.133 19 C -0.155 4.155 20 C -0.148 4.148 21 C -0.159 4.159 22 C 0.000 4.000 23 H 0.062 0.938 24 H 0.126 0.874 25 H 0.125 0.875 26 H 0.033 0.967 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.165 0.835 35 H 0.163 0.837 36 H 0.142 0.858 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.262 -14.228 3.899 14.925 hybrid contribution 1.243 0.447 0.224 1.340 sum 3.506 -13.781 4.123 14.805 Atomic orbital electron populations 1.70234 1.06958 1.26153 1.47904 1.25636 0.95411 1.01649 0.94084 0.85852 0.78516 0.79959 0.78524 1.19803 1.21154 1.20061 1.21248 0.92192 0.92075 1.54168 0.93590 1.18949 0.89016 0.89900 0.90494 0.96370 1.59077 1.28319 1.42985 1.03844 1.22880 0.96694 0.89336 0.98688 1.58647 1.25171 1.04239 1.34339 1.22321 0.94162 0.93223 0.97661 1.22151 0.98873 1.01532 0.96633 1.20535 0.91758 0.98155 1.00272 1.20280 0.98706 1.00590 0.94213 1.21245 0.94510 1.00224 0.97345 1.21309 0.98094 0.96614 0.99497 1.21190 0.99946 0.99005 0.94623 1.21660 0.94481 0.99770 0.99957 1.18637 0.94079 0.97144 0.90140 0.93773 0.87359 0.87465 0.96706 0.91496 0.89615 0.89813 0.88114 0.93489 0.88822 0.89503 0.83468 0.83660 0.85807 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.48 12.77 21.45 0.27 -52.20 16 2 C 0.04 2.05 5.39 84.65 0.46 2.50 16 3 Si 0.95 44.63 29.54 68.60 2.03 46.65 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.56 -31.40 8.73 25.60 0.22 -31.18 16 8 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 9 C 0.23 11.52 1.96 44.17 0.09 11.61 16 10 H 0.02 1.05 5.47 -2.39 -0.01 1.04 16 11 N -0.81 -39.84 8.17 -171.81 -1.40 -41.24 16 12 C 0.05 2.16 4.11 86.30 0.36 2.52 16 13 N -0.51 -18.22 3.82 -695.82 -2.66 -20.88 16 14 C 0.05 1.46 5.81 86.52 0.50 1.97 16 15 C -0.15 -3.65 6.03 30.74 0.19 -3.46 16 16 C -0.07 -1.60 5.81 29.90 0.17 -1.42 16 17 C -0.14 -4.09 5.74 -19.71 -0.11 -4.21 16 18 C -0.11 -3.09 9.63 22.32 0.21 -2.87 16 19 C -0.14 -3.88 10.05 22.24 0.22 -3.65 16 20 C -0.13 -4.48 10.03 22.19 0.22 -4.26 16 21 C -0.14 -5.58 7.40 22.50 0.17 -5.41 16 22 C 0.10 3.54 5.07 38.30 0.19 3.73 16 23 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 24 H 0.32 14.95 8.99 -89.70 -0.81 14.15 16 25 H 0.31 14.24 6.41 -89.70 -0.57 13.66 16 26 H 0.01 0.65 6.99 -2.39 -0.02 0.63 16 27 H 0.07 2.75 7.84 -2.39 -0.02 2.73 16 28 H 0.09 2.14 8.11 -2.39 -0.02 2.12 16 29 H 0.08 2.16 7.85 -2.39 -0.02 2.14 16 30 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.34 6.69 -2.39 -0.02 1.32 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 35 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 36 H 0.12 4.01 8.06 -2.91 -0.02 3.98 16 37 H 0.12 5.48 4.30 -2.91 -0.01 5.46 16 Total: -1.00 -64.30 288.68 0.83 -63.47 By element: Atomic # 1 Polarization: 38.63 SS G_CDS: -0.30 Total: 38.33 kcal Atomic # 6 Polarization: -37.02 SS G_CDS: 2.89 Total: -34.13 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -3.79 Total: -114.32 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -64.30 0.83 -63.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261351301.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.091 kcal (2) G-P(sol) polarization free energy of solvation -64.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds