Wall clock time and date at job start Mon Mar 30 2020 03:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48501 * 109.47122 * 240.00305 * 3 2 1 5 5 H 1.48500 * 109.47487 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46849 * 120.00432 * 3 2 1 7 7 C 1.37873 * 120.00367 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00580 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99594 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47254 * 299.99506 * 9 7 2 11 11 N 1.46895 * 109.47347 * 60.00045 * 9 7 2 12 12 C 1.53003 * 109.47012 * 180.02562 * 9 7 2 13 13 N 1.46901 * 109.47290 * 64.18150 * 12 9 7 14 14 C 1.47157 * 110.99784 * 195.81803 * 13 12 9 15 15 C 1.52895 * 108.49971 * 165.32916 * 14 13 12 16 16 C 1.50716 * 109.94692 * 50.46203 * 15 14 13 17 17 C 1.38679 * 118.48517 * 163.23285 * 16 15 14 18 18 C 1.38027 * 120.34611 * 180.02562 * 17 16 15 19 19 C 1.38265 * 119.82591 * 359.47089 * 18 17 16 20 20 C 1.38008 * 119.86981 * 0.34512 * 19 18 17 21 21 C 1.37833 * 121.65901 * 342.90818 * 16 15 14 22 22 C 1.46611 * 111.00069 * 72.78821 * 13 12 9 23 23 H 0.97001 * 120.00077 * 359.97438 * 1 2 3 24 24 H 1.00901 * 111.00009 * 65.42990 * 11 9 7 25 25 H 1.00904 * 111.00172 * 189.37942 * 11 9 7 26 26 H 1.09001 * 109.47190 * 304.17885 * 12 9 7 27 27 H 1.08998 * 109.47215 * 184.18653 * 12 9 7 28 28 H 1.09000 * 109.63647 * 45.62251 * 14 13 12 29 29 H 1.09002 * 109.63324 * 285.02803 * 14 13 12 30 30 H 1.09000 * 109.38975 * 290.31802 * 15 14 13 31 31 H 1.09000 * 109.31499 * 170.55966 * 15 14 13 32 32 H 1.08004 * 119.82881 * 359.80307 * 17 16 15 33 33 H 1.08001 * 120.09090 * 179.74576 * 18 17 16 34 34 H 1.07999 * 120.06011 * 180.36848 * 19 18 17 35 35 H 1.07999 * 119.81068 * 180.02562 * 20 19 18 36 36 H 1.09003 * 109.27501 * 55.65656 * 22 13 12 37 37 H 1.08999 * 109.27010 * 296.18292 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6249 -2.5571 0.8897 11 7 0.4061 -2.5767 -1.1996 12 6 2.2454 -3.6620 -0.0005 13 7 3.0221 -3.6422 1.2462 14 6 4.2211 -4.4880 1.1340 15 6 5.1635 -4.1493 2.2893 16 6 4.4107 -4.1855 3.5945 17 6 5.1357 -4.2571 4.7744 18 6 4.4855 -4.2928 5.9914 19 6 3.1043 -4.2459 6.0347 20 6 2.3820 -4.1709 4.8611 21 6 3.0337 -4.1426 3.6368 22 6 2.2019 -4.0715 2.3831 23 1 -0.4850 0.8400 0.0004 24 1 0.9685 -2.6142 -2.0365 25 1 -0.2209 -3.3657 -1.1497 26 1 2.9203 -3.5630 -0.8507 27 1 1.7025 -4.6042 -0.0756 28 1 4.7200 -4.2921 0.1849 29 1 3.9350 -5.5383 1.1906 30 1 5.5779 -3.1526 2.1380 31 1 5.9740 -4.8776 2.3187 32 1 6.2148 -4.2887 4.7409 33 1 5.0541 -4.3527 6.9077 34 1 2.5918 -4.2676 6.9851 35 1 1.3032 -4.1340 4.8961 36 1 1.7828 -5.0557 2.1731 37 1 1.3899 -3.3594 2.5301 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261358133.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:03 Heat of formation + Delta-G solvation = 32.001212 kcal Electronic energy + Delta-G solvation = -17865.220204 eV Core-core repulsion = 15220.928013 eV Total energy + Delta-G solvation = -2644.292192 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.80563 -37.12509 -34.41375 -32.48222 -31.50839 -30.77033 -28.96099 -26.64578 -25.13045 -23.66101 -22.50954 -21.89878 -19.87193 -19.13148 -16.57617 -16.26287 -15.42640 -15.21599 -14.64728 -14.35096 -14.21767 -14.09877 -13.57483 -13.19122 -12.91520 -12.54898 -12.30804 -11.92122 -11.91615 -11.70821 -11.39500 -11.18663 -10.76113 -10.62019 -10.50084 -10.37160 -10.17912 -9.55523 -8.84983 -8.59071 -8.32146 -8.21477 -7.65896 -6.93895 -5.68295 -3.76845 1.57192 1.58473 3.46943 3.50751 3.54460 3.94872 4.43217 4.64664 4.93004 4.96293 5.14920 5.19285 5.38801 5.51703 5.58013 5.62706 5.70680 5.73429 5.82719 6.03049 6.04513 6.13218 6.16584 6.21056 6.35399 6.39045 6.43277 6.64541 6.66620 6.74450 6.88840 7.20961 7.50828 7.68102 7.72991 8.14357 8.46082 8.78713 9.10816 9.36009 9.88751 11.37714 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022688 B = 0.006682 C = 0.006215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.858998 B = 4189.268490 C = 4504.288778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.077 3.923 3 Si 0.879 3.121 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.504 4.504 8 H 0.055 0.945 9 C 0.226 3.774 10 H 0.035 0.965 11 N -0.812 5.812 12 C 0.034 3.966 13 N -0.505 5.505 14 C 0.050 3.950 15 C -0.075 4.075 16 C -0.066 4.066 17 C -0.124 4.124 18 C -0.129 4.129 19 C -0.127 4.127 20 C -0.116 4.116 21 C -0.064 4.064 22 C 0.095 3.905 23 H 0.251 0.749 24 H 0.314 0.686 25 H 0.294 0.706 26 H 0.060 0.940 27 H 0.003 0.997 28 H 0.075 0.925 29 H 0.026 0.974 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.035 0.965 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.678 -11.072 7.658 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.127 4.127 3 Si 0.707 3.293 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.543 4.543 8 H 0.074 0.926 9 C 0.116 3.884 10 H 0.052 0.948 11 N -0.337 5.337 12 C -0.096 4.096 13 N -0.228 5.228 14 C -0.079 4.079 15 C -0.112 4.112 16 C -0.067 4.067 17 C -0.142 4.142 18 C -0.147 4.147 19 C -0.145 4.145 20 C -0.135 4.135 21 C -0.064 4.064 22 C -0.033 4.033 23 H 0.061 0.939 24 H 0.125 0.875 25 H 0.104 0.896 26 H 0.079 0.921 27 H 0.021 0.979 28 H 0.093 0.907 29 H 0.044 0.956 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.053 0.947 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.357 -9.734 7.953 14.564 hybrid contribution 0.706 -0.755 -0.215 1.056 sum 8.063 -10.489 7.738 15.326 Atomic orbital electron populations 1.70089 1.05634 1.25231 1.48574 1.24948 0.94527 0.98353 0.94886 0.86913 0.79733 0.84294 0.78319 1.20653 1.21735 1.20550 1.20796 0.92271 0.89557 1.51665 0.92640 1.19041 0.88312 0.91185 0.89817 0.94751 1.59263 1.23426 1.46542 1.04518 1.23368 0.97351 0.98710 0.90198 1.62164 1.06407 1.50633 1.03624 1.22171 0.92961 0.94383 0.98381 1.20541 0.96909 1.02511 0.91257 1.19607 0.93096 0.98917 0.95053 1.21044 0.99419 1.01638 0.92145 1.20986 0.94631 1.01638 0.97426 1.20983 0.94227 1.01437 0.97839 1.21069 0.99969 1.00549 0.91887 1.19739 0.93384 0.98443 0.94883 1.20993 0.95439 0.98700 0.88173 0.93878 0.87515 0.89601 0.92107 0.97912 0.90665 0.95602 0.89682 0.91161 0.86510 0.86571 0.86426 0.86112 0.94707 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.72 12.77 55.43 0.71 -25.01 16 2 C 0.08 2.22 5.39 -17.82 -0.10 2.13 16 3 Si 0.88 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.50 -13.96 8.47 -34.44 -0.29 -14.25 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.23 5.52 2.71 -68.87 -0.19 5.33 16 10 H 0.03 0.93 6.72 -51.93 -0.35 0.59 16 11 N -0.81 -19.01 8.54 -5.66 -0.05 -19.05 16 12 C 0.03 0.68 4.56 -3.82 -0.02 0.66 16 13 N -0.50 -9.68 4.33 -236.21 -1.02 -10.70 16 14 C 0.05 0.78 5.57 -3.74 -0.02 0.76 16 15 C -0.07 -1.07 5.94 -27.93 -0.17 -1.24 16 16 C -0.07 -1.03 5.77 -104.60 -0.60 -1.63 16 17 C -0.12 -1.67 9.66 -39.50 -0.38 -2.05 16 18 C -0.13 -1.62 10.05 -39.65 -0.40 -2.02 16 19 C -0.13 -1.65 10.05 -39.66 -0.40 -2.05 16 20 C -0.12 -1.72 9.65 -39.48 -0.38 -2.10 16 21 C -0.06 -1.06 5.79 -104.63 -0.61 -1.67 16 22 C 0.09 1.70 5.00 -5.17 -0.03 1.68 16 23 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.31 6.91 8.97 -39.29 -0.35 6.56 16 25 H 0.29 6.10 9.08 -39.29 -0.36 5.74 16 26 H 0.06 1.22 7.76 -51.93 -0.40 0.81 16 27 H 0.00 0.05 7.95 -51.93 -0.41 -0.36 16 28 H 0.07 1.13 7.78 -51.93 -0.40 0.72 16 29 H 0.03 0.39 8.05 -51.93 -0.42 -0.03 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.04 0.59 8.01 -51.93 -0.42 0.17 16 37 H 0.10 1.95 6.78 -51.93 -0.35 1.59 16 LS Contribution 300.75 15.07 4.53 4.53 Total: -1.00 -31.00 300.75 -9.97 -40.96 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -5.54 Total: 8.56 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -3.57 Total: -16.45 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.36 Total: -54.76 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.00 -9.97 -40.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261358133.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.965 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds