Wall clock time and date at job start Mon Mar 30 2020 03:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48501 * 109.47122 * 240.00305 * 3 2 1 5 5 H 1.48500 * 109.47487 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46849 * 120.00432 * 3 2 1 7 7 C 1.37873 * 120.00367 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00580 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99594 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47254 * 299.99506 * 9 7 2 11 11 N 1.46895 * 109.47347 * 60.00045 * 9 7 2 12 12 C 1.53003 * 109.47012 * 180.02562 * 9 7 2 13 13 N 1.46901 * 109.47290 * 64.18150 * 12 9 7 14 14 C 1.47157 * 110.99784 * 195.81803 * 13 12 9 15 15 C 1.52895 * 108.49971 * 165.32916 * 14 13 12 16 16 C 1.50716 * 109.94692 * 50.46203 * 15 14 13 17 17 C 1.38679 * 118.48517 * 163.23285 * 16 15 14 18 18 C 1.38027 * 120.34611 * 180.02562 * 17 16 15 19 19 C 1.38265 * 119.82591 * 359.47089 * 18 17 16 20 20 C 1.38008 * 119.86981 * 0.34512 * 19 18 17 21 21 C 1.37833 * 121.65901 * 342.90818 * 16 15 14 22 22 C 1.46611 * 111.00069 * 72.78821 * 13 12 9 23 23 H 0.97001 * 120.00077 * 359.97438 * 1 2 3 24 24 H 1.00901 * 111.00009 * 65.42990 * 11 9 7 25 25 H 1.00904 * 111.00172 * 189.37942 * 11 9 7 26 26 H 1.09001 * 109.47190 * 304.17885 * 12 9 7 27 27 H 1.08998 * 109.47215 * 184.18653 * 12 9 7 28 28 H 1.09000 * 109.63647 * 45.62251 * 14 13 12 29 29 H 1.09002 * 109.63324 * 285.02803 * 14 13 12 30 30 H 1.09000 * 109.38975 * 290.31802 * 15 14 13 31 31 H 1.09000 * 109.31499 * 170.55966 * 15 14 13 32 32 H 1.08004 * 119.82881 * 359.80307 * 17 16 15 33 33 H 1.08001 * 120.09090 * 179.74576 * 18 17 16 34 34 H 1.07999 * 120.06011 * 180.36848 * 19 18 17 35 35 H 1.07999 * 119.81068 * 180.02562 * 20 19 18 36 36 H 1.09003 * 109.27501 * 55.65656 * 22 13 12 37 37 H 1.08999 * 109.27010 * 296.18292 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6249 -2.5571 0.8897 11 7 0.4061 -2.5767 -1.1996 12 6 2.2454 -3.6620 -0.0005 13 7 3.0221 -3.6422 1.2462 14 6 4.2211 -4.4880 1.1340 15 6 5.1635 -4.1493 2.2893 16 6 4.4107 -4.1855 3.5945 17 6 5.1357 -4.2571 4.7744 18 6 4.4855 -4.2928 5.9914 19 6 3.1043 -4.2459 6.0347 20 6 2.3820 -4.1709 4.8611 21 6 3.0337 -4.1426 3.6368 22 6 2.2019 -4.0715 2.3831 23 1 -0.4850 0.8400 0.0004 24 1 0.9685 -2.6142 -2.0365 25 1 -0.2209 -3.3657 -1.1497 26 1 2.9203 -3.5630 -0.8507 27 1 1.7025 -4.6042 -0.0756 28 1 4.7200 -4.2921 0.1849 29 1 3.9350 -5.5383 1.1906 30 1 5.5779 -3.1526 2.1380 31 1 5.9740 -4.8776 2.3187 32 1 6.2148 -4.2887 4.7409 33 1 5.0541 -4.3527 6.9077 34 1 2.5918 -4.2676 6.9851 35 1 1.3032 -4.1340 4.8961 36 1 1.7828 -5.0557 2.1731 37 1 1.3899 -3.3594 2.5301 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261358133.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:03 Heat of formation + Delta-G solvation = 11.232181 kcal Electronic energy + Delta-G solvation = -17866.120817 eV Core-core repulsion = 15220.928013 eV Total energy + Delta-G solvation = -2645.192805 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.97954 -38.51097 -36.14011 -33.87512 -33.26975 -32.19661 -30.13012 -28.38819 -26.93152 -25.09117 -23.81023 -23.00035 -21.69495 -20.35106 -18.48234 -17.54466 -16.75753 -16.53040 -16.47263 -15.94829 -15.77797 -15.43227 -14.94727 -14.56050 -14.14187 -14.04870 -13.89822 -13.53775 -13.43580 -12.93612 -12.83201 -12.64993 -12.50988 -12.32987 -12.18602 -11.77880 -11.51589 -11.42763 -10.91282 -10.41761 -9.69492 -9.43656 -9.12719 -8.75714 -7.86613 -6.00728 0.48785 0.51597 1.44553 1.46087 1.52661 2.53896 2.86622 3.03361 3.40299 3.78742 3.82997 4.07669 4.17591 4.27194 4.33745 4.35953 4.42569 4.52360 4.56633 4.60665 4.69342 4.77512 4.84348 4.90021 4.94234 5.08977 5.15659 5.29902 5.58749 5.62141 5.63356 5.73851 5.91251 6.12079 6.21804 6.28628 6.45136 6.81920 7.23004 7.34231 7.68069 9.17950 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022688 B = 0.006682 C = 0.006215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.858998 B = 4189.268490 C = 4504.288778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.027 3.973 3 Si 0.938 3.062 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.509 4.509 8 H 0.048 0.952 9 C 0.230 3.770 10 H 0.000 1.000 11 N -0.826 5.826 12 C 0.049 3.951 13 N -0.529 5.529 14 C 0.050 3.950 15 C -0.071 4.071 16 C -0.085 4.085 17 C -0.127 4.127 18 C -0.125 4.125 19 C -0.128 4.128 20 C -0.133 4.133 21 C -0.095 4.095 22 C 0.103 3.897 23 H 0.249 0.751 24 H 0.322 0.678 25 H 0.310 0.690 26 H 0.063 0.937 27 H 0.017 0.983 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.122 0.878 36 H 0.040 0.960 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.761 -11.785 8.686 17.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.175 4.175 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.548 4.548 8 H 0.066 0.934 9 C 0.120 3.880 10 H 0.018 0.982 11 N -0.353 5.353 12 C -0.081 4.081 13 N -0.253 5.253 14 C -0.078 4.078 15 C -0.108 4.108 16 C -0.085 4.085 17 C -0.145 4.145 18 C -0.143 4.143 19 C -0.146 4.146 20 C -0.151 4.151 21 C -0.095 4.095 22 C -0.025 4.025 23 H 0.058 0.942 24 H 0.134 0.866 25 H 0.121 0.879 26 H 0.082 0.918 27 H 0.035 0.965 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.162 0.838 33 H 0.167 0.833 34 H 0.162 0.838 35 H 0.140 0.860 36 H 0.057 0.943 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.458 -10.460 8.978 16.717 hybrid contribution 0.067 -0.587 -0.467 0.753 sum 9.525 -11.047 8.511 16.887 Atomic orbital electron populations 1.70222 1.06917 1.25663 1.50186 1.25635 0.95294 1.01506 0.95029 0.85959 0.78513 0.80632 0.78348 1.19828 1.21582 1.20543 1.21092 0.92070 0.91109 1.50503 0.93425 1.18796 0.88560 0.91855 0.88814 0.98228 1.59001 1.24009 1.47861 1.04478 1.22983 0.96633 0.97362 0.91137 1.62066 1.07440 1.52557 1.03207 1.22249 0.91693 0.94305 0.99554 1.20556 0.97194 1.02849 0.90192 1.19844 0.92768 0.99499 0.96427 1.21380 1.00789 1.00662 0.91637 1.21431 0.94607 0.99725 0.98509 1.21335 0.94849 1.00291 0.98125 1.21249 1.00448 1.01162 0.92283 1.19771 0.94196 1.00971 0.94555 1.20799 0.94927 0.97746 0.89020 0.94226 0.86568 0.87868 0.91804 0.96533 0.89983 0.94623 0.90759 0.87889 0.83848 0.83273 0.83814 0.85989 0.94270 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.45 12.77 21.45 0.27 -54.17 16 2 C 0.03 1.54 5.39 84.65 0.46 1.99 16 3 Si 0.94 46.03 29.54 68.60 2.03 48.06 16 4 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 6 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.51 -28.61 8.47 25.60 0.22 -28.39 16 8 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 9 C 0.23 11.48 2.71 44.17 0.12 11.60 16 10 H 0.00 -0.01 6.72 -2.39 -0.02 -0.02 16 11 N -0.83 -39.10 8.54 -171.81 -1.47 -40.56 16 12 C 0.05 1.98 4.56 86.30 0.39 2.38 16 13 N -0.53 -20.39 4.33 -901.24 -3.90 -24.29 16 14 C 0.05 1.51 5.57 86.22 0.48 1.99 16 15 C -0.07 -1.90 5.94 29.82 0.18 -1.72 16 16 C -0.09 -2.51 5.77 -19.85 -0.11 -2.62 16 17 C -0.13 -3.03 9.66 22.33 0.22 -2.81 16 18 C -0.13 -2.72 10.05 22.23 0.22 -2.49 16 19 C -0.13 -3.05 10.05 22.22 0.22 -2.83 16 20 C -0.13 -3.90 9.65 22.33 0.22 -3.69 16 21 C -0.09 -3.14 5.79 -19.87 -0.12 -3.25 16 22 C 0.10 3.82 5.00 85.59 0.43 4.25 16 23 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 24 H 0.32 14.19 8.97 -89.69 -0.80 13.38 16 25 H 0.31 12.96 9.08 -89.69 -0.81 12.15 16 26 H 0.06 2.52 7.76 -2.39 -0.02 2.50 16 27 H 0.02 0.62 7.95 -2.39 -0.02 0.60 16 28 H 0.08 2.33 7.78 -2.39 -0.02 2.31 16 29 H 0.04 1.01 8.05 -2.39 -0.02 0.99 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 33 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 35 H 0.12 3.37 8.06 -2.91 -0.02 3.34 16 36 H 0.04 1.37 8.01 -2.39 -0.02 1.35 16 37 H 0.06 2.70 6.78 -2.39 -0.02 2.68 16 Total: -1.00 -66.97 300.75 -0.70 -67.66 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -0.55 Total: 28.90 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 2.92 Total: -25.59 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -5.09 Total: -119.02 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -66.97 -0.70 -67.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261358133.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.897 kcal (2) G-P(sol) polarization free energy of solvation -66.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds