Wall clock time and date at job start Mon Mar 30 2020 03:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 120.00186 * 2 1 4 4 H 1.48499 * 109.46725 * 270.00047 * 3 2 1 5 5 H 1.48499 * 109.47050 * 30.00164 * 3 2 1 6 6 H 1.48496 * 109.46965 * 150.00365 * 3 2 1 7 7 C 1.37876 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99720 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00244 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.47479 * 54.21711 * 9 7 2 11 11 C 1.53007 * 109.46693 * 294.21922 * 9 7 2 12 12 N 1.46907 * 109.46773 * 185.12240 * 11 9 7 13 13 N 1.46901 * 109.47491 * 174.22277 * 9 7 2 14 14 C 1.47156 * 111.00275 * 194.46666 * 13 9 7 15 15 C 1.52900 * 108.50573 * 52.15302 * 14 13 9 16 16 C 1.50717 * 109.95455 * 50.38932 * 15 14 13 17 17 C 1.38687 * 118.48480 * 163.22593 * 16 15 14 18 18 C 1.38031 * 120.34690 * 179.70964 * 17 16 15 19 19 C 1.38261 * 119.82822 * 359.81741 * 18 17 16 20 20 C 1.38012 * 119.86811 * 0.54463 * 19 18 17 21 21 C 1.37824 * 121.66708 * 343.10361 * 16 15 14 22 22 C 1.46633 * 110.99526 * 317.45808 * 13 9 7 23 23 H 0.97004 * 119.99883 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47332 * 305.12035 * 11 9 7 25 25 H 1.08997 * 109.47171 * 65.12319 * 11 9 7 26 26 H 1.00898 * 110.99719 * 84.52838 * 12 11 9 27 27 H 1.00898 * 110.99678 * 208.47893 * 12 11 9 28 28 H 1.08998 * 109.62780 * 171.85709 * 14 13 9 29 29 H 1.08998 * 109.63147 * 292.24972 * 14 13 9 30 30 H 1.09001 * 109.38932 * 170.54248 * 15 14 13 31 31 H 1.09003 * 109.38557 * 290.34089 * 15 14 13 32 32 H 1.08006 * 119.82226 * 359.73388 * 17 16 15 33 33 H 1.08000 * 120.07947 * 180.02562 * 18 17 16 34 34 H 1.08000 * 120.06522 * 180.30976 * 19 18 17 35 35 H 1.07996 * 119.81405 * 179.71645 * 20 19 18 36 36 H 1.09003 * 109.29895 * 168.78695 * 22 13 9 37 37 H 1.09000 * 109.13330 * 49.30611 * 22 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8746 -0.5930 0.8348 11 6 4.0219 -0.6026 -1.3144 12 7 5.4858 -0.7147 -1.3663 13 7 4.0012 -2.5720 0.1410 14 6 5.4310 -2.5909 0.4885 15 6 5.6467 -1.6907 1.7054 16 6 4.6647 -2.0494 2.7910 17 6 4.9145 -1.6071 4.0815 18 6 4.0376 -1.9082 5.1040 19 6 2.9022 -2.6516 4.8397 20 6 2.6565 -3.0986 3.5573 21 6 3.5367 -2.7966 2.5284 22 6 3.2250 -3.3059 1.1455 23 1 -0.4850 0.8401 0.0004 24 1 3.5860 -1.1479 -2.1514 25 1 3.7355 0.4473 -1.3761 26 1 5.7671 -1.6219 -1.7067 27 1 5.8851 0.0221 -1.9282 28 1 5.7362 -3.6095 0.7278 29 1 6.0172 -2.2210 -0.3528 30 1 6.6624 -1.8231 2.0780 31 1 5.5001 -0.6500 1.4162 32 1 5.7998 -1.0235 4.2873 33 1 4.2362 -1.5612 6.1073 34 1 2.2109 -2.8852 5.6359 35 1 1.7717 -3.6831 3.3527 36 1 3.4721 -4.3660 1.0878 37 1 2.1622 -3.1723 0.9435 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261359711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:07 Heat of formation + Delta-G solvation = 57.584962 kcal Electronic energy + Delta-G solvation = -18799.610496 eV Core-core repulsion = 16156.427699 eV Total energy + Delta-G solvation = -2643.182797 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.86617 -37.13226 -33.79781 -32.69122 -31.90557 -30.25001 -29.03233 -27.81695 -24.27682 -23.13675 -22.62240 -21.58675 -20.62699 -18.25282 -16.94903 -16.18264 -15.88070 -14.86420 -14.63633 -14.41131 -14.01566 -13.93778 -13.36357 -13.07482 -12.95463 -12.62454 -12.33650 -11.90116 -11.83011 -11.36244 -11.15083 -10.95205 -10.80579 -10.66214 -10.33991 -10.17410 -9.76490 -9.57228 -8.92374 -8.61700 -8.21483 -8.05888 -7.92979 -7.20663 -6.09514 -4.08494 1.90756 1.93126 3.22509 3.35622 3.39837 4.29074 4.37857 4.96647 5.10912 5.27148 5.37417 5.41188 5.48981 5.53864 5.79163 5.83489 5.99347 6.04099 6.15752 6.20114 6.34240 6.45923 6.48992 6.54844 6.64668 6.66570 6.79408 6.88947 6.98315 7.01092 7.27154 7.36169 7.54309 7.57766 7.72840 7.92928 8.04328 8.19302 8.66158 8.95072 9.52702 11.02345 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019419 B = 0.011090 C = 0.009051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.513586 B = 2524.083263 C = 3092.886075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.075 3.925 3 Si 0.873 3.127 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.261 1.261 7 C -0.512 4.512 8 H 0.086 0.914 9 C 0.183 3.817 10 H 0.023 0.977 11 C 0.064 3.936 12 N -0.850 5.850 13 N -0.515 5.515 14 C 0.043 3.957 15 C -0.109 4.109 16 C -0.076 4.076 17 C -0.127 4.127 18 C -0.135 4.135 19 C -0.130 4.130 20 C -0.112 4.112 21 C -0.080 4.080 22 C 0.085 3.915 23 H 0.264 0.736 24 H 0.038 0.962 25 H 0.051 0.949 26 H 0.338 0.662 27 H 0.318 0.682 28 H 0.050 0.950 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.065 0.935 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.119 -3.968 3.931 11.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.127 4.127 3 Si 0.702 3.298 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.186 1.186 7 C -0.551 4.551 8 H 0.104 0.896 9 C 0.075 3.925 10 H 0.040 0.960 11 C -0.067 4.067 12 N -0.382 5.382 13 N -0.236 5.236 14 C -0.086 4.086 15 C -0.148 4.148 16 C -0.076 4.076 17 C -0.145 4.145 18 C -0.153 4.153 19 C -0.148 4.148 20 C -0.130 4.130 21 C -0.081 4.081 22 C -0.043 4.043 23 H 0.073 0.927 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.153 0.847 27 H 0.130 0.870 28 H 0.068 0.932 29 H 0.124 0.876 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.083 0.917 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.850 -3.984 4.212 11.430 hybrid contribution 0.208 1.484 -0.064 1.500 sum 10.058 -2.500 4.148 11.163 Atomic orbital electron populations 1.69872 1.06096 1.26864 1.50667 1.24895 0.94660 0.98653 0.94539 0.87024 0.80587 0.84181 0.77983 1.20678 1.22109 1.18607 1.21136 0.88553 0.94582 1.50786 0.89641 1.19836 0.94922 0.85234 0.92518 0.95997 1.22315 0.85138 0.99052 1.00157 1.59445 1.11573 1.07119 1.60016 1.62505 1.01174 1.17062 1.42852 1.22610 0.91743 0.97264 0.96982 1.21016 0.96288 1.02634 0.94832 1.19687 0.95915 0.97517 0.94458 1.20997 0.99748 1.00860 0.92879 1.20901 0.95561 1.00319 0.98494 1.20958 0.97486 0.99565 0.96776 1.21069 0.98953 1.00410 0.92599 1.20511 0.93410 0.96712 0.97488 1.21321 1.02101 0.95913 0.84930 0.92651 0.94339 0.93132 0.84652 0.87016 0.93173 0.87618 0.92044 0.89485 0.87062 0.87018 0.86862 0.86387 0.91697 0.86929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 2 C 0.07 2.12 5.46 -17.82 -0.10 2.02 16 3 Si 0.87 21.83 24.66 -169.99 -4.19 17.64 16 4 H -0.28 -6.77 6.92 56.52 0.39 -6.38 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 6 H -0.26 -6.47 6.38 56.52 0.36 -6.11 16 7 C -0.51 -13.87 8.22 -34.44 -0.28 -14.15 16 8 H 0.09 2.48 5.97 -52.49 -0.31 2.17 16 9 C 0.18 4.22 1.03 -68.86 -0.07 4.15 16 10 H 0.02 0.56 3.78 -51.93 -0.20 0.37 16 11 C 0.06 1.34 6.01 -3.82 -0.02 1.32 16 12 N -0.85 -14.01 7.44 -10.36 -0.08 -14.08 16 13 N -0.51 -10.42 4.87 -229.59 -1.12 -11.54 16 14 C 0.04 0.74 5.38 -3.74 -0.02 0.72 16 15 C -0.11 -1.93 5.15 -27.93 -0.14 -2.07 16 16 C -0.08 -1.43 5.20 -104.60 -0.54 -1.97 16 17 C -0.13 -2.18 9.66 -39.49 -0.38 -2.56 16 18 C -0.13 -2.17 10.05 -39.65 -0.40 -2.57 16 19 C -0.13 -2.15 10.05 -39.66 -0.40 -2.55 16 20 C -0.11 -2.04 9.65 -39.48 -0.38 -2.42 16 21 C -0.08 -1.56 5.43 -104.63 -0.57 -2.13 16 22 C 0.09 1.70 5.20 -5.16 -0.03 1.68 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 1.13 4.13 -51.93 -0.21 0.92 16 26 H 0.34 4.99 7.05 -39.29 -0.28 4.71 16 27 H 0.32 4.56 9.08 -39.29 -0.36 4.21 16 28 H 0.05 0.80 8.05 -51.93 -0.42 0.38 16 29 H 0.11 1.67 4.18 -51.93 -0.22 1.46 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.09 1.73 6.53 -51.93 -0.34 1.39 16 32 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 35 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.11 2.53 5.21 -51.93 -0.27 2.26 16 LS Contribution 276.75 15.07 4.17 4.17 Total: -1.00 -29.86 276.75 -8.53 -38.39 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -4.75 Total: 12.14 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -3.34 Total: -20.55 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.42 Total: -51.79 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.19 Total: 17.64 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.86 -8.53 -38.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261359711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.975 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds