Wall clock time and date at job start Mon Mar 30 2020 03:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 120.00186 * 2 1 4 4 H 1.48499 * 109.46725 * 270.00047 * 3 2 1 5 5 H 1.48499 * 109.47050 * 30.00164 * 3 2 1 6 6 H 1.48496 * 109.46965 * 150.00365 * 3 2 1 7 7 C 1.37876 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99720 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00244 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.47479 * 54.21711 * 9 7 2 11 11 C 1.53007 * 109.46693 * 294.21922 * 9 7 2 12 12 N 1.46907 * 109.46773 * 185.12240 * 11 9 7 13 13 N 1.46901 * 109.47491 * 174.22277 * 9 7 2 14 14 C 1.47156 * 111.00275 * 194.46666 * 13 9 7 15 15 C 1.52900 * 108.50573 * 52.15302 * 14 13 9 16 16 C 1.50717 * 109.95455 * 50.38932 * 15 14 13 17 17 C 1.38687 * 118.48480 * 163.22593 * 16 15 14 18 18 C 1.38031 * 120.34690 * 179.70964 * 17 16 15 19 19 C 1.38261 * 119.82822 * 359.81741 * 18 17 16 20 20 C 1.38012 * 119.86811 * 0.54463 * 19 18 17 21 21 C 1.37824 * 121.66708 * 343.10361 * 16 15 14 22 22 C 1.46633 * 110.99526 * 317.45808 * 13 9 7 23 23 H 0.97004 * 119.99883 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47332 * 305.12035 * 11 9 7 25 25 H 1.08997 * 109.47171 * 65.12319 * 11 9 7 26 26 H 1.00898 * 110.99719 * 84.52838 * 12 11 9 27 27 H 1.00898 * 110.99678 * 208.47893 * 12 11 9 28 28 H 1.08998 * 109.62780 * 171.85709 * 14 13 9 29 29 H 1.08998 * 109.63147 * 292.24972 * 14 13 9 30 30 H 1.09001 * 109.38932 * 170.54248 * 15 14 13 31 31 H 1.09003 * 109.38557 * 290.34089 * 15 14 13 32 32 H 1.08006 * 119.82226 * 359.73388 * 17 16 15 33 33 H 1.08000 * 120.07947 * 180.02562 * 18 17 16 34 34 H 1.08000 * 120.06522 * 180.30976 * 19 18 17 35 35 H 1.07996 * 119.81405 * 179.71645 * 20 19 18 36 36 H 1.09003 * 109.29895 * 168.78695 * 22 13 9 37 37 H 1.09000 * 109.13330 * 49.30611 * 22 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8746 -0.5930 0.8348 11 6 4.0219 -0.6026 -1.3144 12 7 5.4858 -0.7147 -1.3663 13 7 4.0012 -2.5720 0.1410 14 6 5.4310 -2.5909 0.4885 15 6 5.6467 -1.6907 1.7054 16 6 4.6647 -2.0494 2.7910 17 6 4.9145 -1.6071 4.0815 18 6 4.0376 -1.9082 5.1040 19 6 2.9022 -2.6516 4.8397 20 6 2.6565 -3.0986 3.5573 21 6 3.5367 -2.7966 2.5284 22 6 3.2250 -3.3059 1.1455 23 1 -0.4850 0.8401 0.0004 24 1 3.5860 -1.1479 -2.1514 25 1 3.7355 0.4473 -1.3761 26 1 5.7671 -1.6219 -1.7067 27 1 5.8851 0.0221 -1.9282 28 1 5.7362 -3.6095 0.7278 29 1 6.0172 -2.2210 -0.3528 30 1 6.6624 -1.8231 2.0780 31 1 5.5001 -0.6500 1.4162 32 1 5.7998 -1.0235 4.2873 33 1 4.2362 -1.5612 6.1073 34 1 2.2109 -2.8852 5.6359 35 1 1.7717 -3.6831 3.3527 36 1 3.4721 -4.3660 1.0878 37 1 2.1622 -3.1723 0.9435 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261359711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:06 Heat of formation + Delta-G solvation = 35.714563 kcal Electronic energy + Delta-G solvation = -18800.558868 eV Core-core repulsion = 16156.427699 eV Total energy + Delta-G solvation = -2644.131169 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.32034 -38.61938 -35.38056 -34.55269 -33.45758 -31.72172 -30.61643 -29.35985 -26.06907 -24.75104 -24.06199 -22.97007 -22.23389 -19.89803 -18.82172 -17.77810 -17.25949 -16.56672 -16.05016 -15.94103 -15.69793 -15.53543 -14.91661 -14.61134 -14.49091 -14.26526 -13.91862 -13.52836 -13.34718 -12.91991 -12.69029 -12.51806 -12.48291 -12.21574 -11.98761 -11.72154 -11.66515 -11.25541 -10.81194 -10.70177 -9.57203 -9.51264 -9.33144 -8.80628 -8.27504 -6.28845 0.55278 0.57089 1.23222 1.31797 1.40784 2.29610 2.93058 3.06196 3.40187 3.83182 4.01574 4.04238 4.16833 4.25545 4.42052 4.45736 4.51312 4.63867 4.66662 4.71200 4.80367 4.93427 5.02143 5.08969 5.18074 5.21134 5.27575 5.39233 5.56917 5.63330 5.68005 5.70812 5.87817 6.03949 6.24039 6.31056 6.46771 6.72960 6.79483 6.85200 7.35831 8.87596 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019419 B = 0.011090 C = 0.009051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.513586 B = 2524.083263 C = 3092.886075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.020 3.980 3 Si 0.931 3.069 4 H -0.264 1.264 5 H -0.300 1.300 6 H -0.255 1.255 7 C -0.506 4.506 8 H 0.052 0.948 9 C 0.192 3.808 10 H 0.007 0.993 11 C 0.072 3.928 12 N -0.838 5.838 13 N -0.520 5.520 14 C 0.044 3.956 15 C -0.104 4.104 16 C -0.096 4.096 17 C -0.134 4.134 18 C -0.133 4.133 19 C -0.133 4.133 20 C -0.134 4.134 21 C -0.106 4.106 22 C 0.089 3.911 23 H 0.263 0.737 24 H 0.028 0.972 25 H 0.040 0.960 26 H 0.352 0.648 27 H 0.338 0.662 28 H 0.065 0.935 29 H 0.123 0.877 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.136 0.864 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.933 -3.444 4.739 14.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.190 1.190 5 H -0.227 1.227 6 H -0.179 1.179 7 C -0.544 4.544 8 H 0.070 0.930 9 C 0.084 3.916 10 H 0.025 0.975 11 C -0.059 4.059 12 N -0.373 5.373 13 N -0.241 5.241 14 C -0.084 4.084 15 C -0.142 4.142 16 C -0.097 4.097 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.151 4.151 20 C -0.152 4.152 21 C -0.108 4.108 22 C -0.039 4.039 23 H 0.072 0.928 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.168 0.832 27 H 0.151 0.849 28 H 0.084 0.916 29 H 0.140 0.860 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.154 0.846 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.136 0.864 36 H 0.100 0.900 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.705 -3.477 5.004 14.091 hybrid contribution -0.667 1.196 -0.246 1.391 sum 12.038 -2.281 4.758 13.144 Atomic orbital electron populations 1.70016 1.07792 1.27580 1.53173 1.25624 0.95273 1.02080 0.94812 0.86082 0.79306 0.80036 0.78730 1.18962 1.22708 1.17898 1.21436 0.91078 0.93166 1.48751 0.93048 1.19578 0.92108 0.86847 0.93103 0.97513 1.21951 0.87897 0.97807 0.98273 1.59226 1.08436 1.08730 1.60859 1.62492 1.03038 1.15199 1.43417 1.22730 0.89599 0.98414 0.97700 1.20967 0.97540 1.01097 0.94587 1.19964 0.96060 0.97812 0.95837 1.21359 1.00807 1.00651 0.92372 1.21343 0.94677 0.99096 0.99939 1.21321 0.98256 0.98942 0.96601 1.21280 0.99121 1.01257 0.93585 1.20566 0.94677 0.98304 0.97260 1.21153 0.99952 0.97000 0.85786 0.92777 0.95395 0.94218 0.83164 0.84892 0.91610 0.85957 0.89196 0.91606 0.84622 0.83628 0.84245 0.86416 0.89968 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.85 13.96 21.45 0.30 -58.55 16 2 C 0.02 1.14 5.46 84.66 0.46 1.60 16 3 Si 0.93 45.41 24.66 68.60 1.69 47.11 16 4 H -0.26 -12.08 6.92 99.48 0.69 -11.39 16 5 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 6 H -0.25 -12.04 6.38 99.48 0.63 -11.41 16 7 C -0.51 -28.29 8.22 25.60 0.21 -28.08 16 8 H 0.05 3.18 5.97 -2.91 -0.02 3.16 16 9 C 0.19 8.84 1.03 44.17 0.05 8.88 16 10 H 0.01 0.36 3.78 -2.39 -0.01 0.36 16 11 C 0.07 2.94 6.01 86.30 0.52 3.45 16 12 N -0.84 -25.18 7.44 -186.70 -1.39 -26.57 16 13 N -0.52 -20.82 4.87 -880.28 -4.29 -25.11 16 14 C 0.04 1.39 5.38 86.22 0.46 1.86 16 15 C -0.10 -3.40 5.15 29.82 0.15 -3.25 16 16 C -0.10 -3.50 5.20 -19.85 -0.10 -3.60 16 17 C -0.13 -4.24 9.66 22.33 0.22 -4.03 16 18 C -0.13 -3.89 10.05 22.23 0.22 -3.67 16 19 C -0.13 -4.19 10.05 22.22 0.22 -3.96 16 20 C -0.13 -4.91 9.65 22.33 0.22 -4.70 16 21 C -0.11 -4.18 5.43 -19.87 -0.11 -4.29 16 22 C 0.09 3.64 5.20 85.58 0.44 4.09 16 23 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 24 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.04 1.70 4.13 -2.39 -0.01 1.69 16 26 H 0.35 9.20 7.05 -89.70 -0.63 8.57 16 27 H 0.34 8.46 9.08 -89.70 -0.81 7.65 16 28 H 0.07 1.92 8.05 -2.39 -0.02 1.90 16 29 H 0.12 3.46 4.18 -2.39 -0.01 3.45 16 30 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.07 2.46 6.53 -2.39 -0.02 2.45 16 32 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 33 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 34 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 35 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 36 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 37 H 0.08 3.61 5.21 -2.39 -0.01 3.59 16 Total: -1.00 -66.12 276.75 -1.15 -67.27 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: -0.43 Total: 31.54 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 2.97 Total: -35.68 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -5.37 Total: -110.23 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.69 Total: 47.11 kcal Total: -66.12 -1.15 -67.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261359711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.984 kcal (2) G-P(sol) polarization free energy of solvation -66.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds