Wall clock time and date at job start Mon Mar 30 2020 03:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99944 * 2 1 4 4 H 1.48499 * 109.46847 * 240.00430 * 3 2 1 5 5 H 1.48494 * 109.46984 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47061 * 120.00621 * 3 2 1 7 7 C 1.37871 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00325 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00007 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46791 * 305.45846 * 9 7 2 11 11 C 1.53003 * 109.46872 * 65.45257 * 9 7 2 12 12 N 1.46906 * 109.46810 * 182.91291 * 11 9 7 13 13 N 1.46895 * 109.47310 * 185.45564 * 9 7 2 14 14 C 1.46944 * 111.01149 * 42.18267 * 13 9 7 15 15 C 1.52889 * 108.62857 * 52.09414 * 14 13 9 16 16 C 1.50719 * 109.87862 * 50.41221 * 15 14 13 17 17 C 1.38677 * 118.49360 * 163.18313 * 16 15 14 18 18 C 1.38036 * 120.34933 * 179.83670 * 17 16 15 19 19 C 1.38256 * 119.83075 * 359.97438 * 18 17 16 20 20 C 1.38019 * 119.86750 * 0.07292 * 19 18 17 21 21 C 1.37839 * 121.66308 * 343.13261 * 16 15 14 22 22 C 1.46626 * 111.00040 * 165.11931 * 13 9 7 23 23 H 0.97003 * 120.00085 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47145 * 302.91682 * 11 9 7 25 25 H 1.09004 * 109.46874 * 62.91432 * 11 9 7 26 26 H 1.00902 * 110.99545 * 56.04911 * 12 11 9 27 27 H 1.00895 * 110.99453 * 180.02562 * 12 11 9 28 28 H 1.09004 * 109.50663 * 292.39523 * 14 13 9 29 29 H 1.08995 * 109.64262 * 171.88521 * 14 13 9 30 30 H 1.08995 * 109.39598 * 290.31384 * 15 14 13 31 31 H 1.09003 * 109.39223 * 170.50744 * 15 14 13 32 32 H 1.08001 * 119.82351 * 359.86369 * 17 16 15 33 33 H 1.08000 * 120.08246 * 179.97438 * 18 17 16 34 34 H 1.07999 * 120.06843 * 180.09123 * 19 18 17 35 35 H 1.08004 * 119.81101 * 180.02562 * 20 19 18 36 36 H 1.09008 * 109.30014 * 168.81447 * 22 13 9 37 37 H 1.09003 * 109.13249 * 49.34015 * 22 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5534 -2.5159 0.8368 11 6 0.4765 -2.6409 -1.3124 12 7 -0.3128 -3.8795 -1.2837 13 7 2.2002 -3.6126 0.1305 14 6 3.2364 -3.3071 1.1266 15 6 2.5539 -2.8711 2.4233 16 6 1.4975 -3.8745 2.8090 17 6 1.0147 -3.8604 4.1089 18 6 0.0446 -4.7600 4.5025 19 6 -0.4489 -5.6797 3.5958 20 6 0.0316 -5.6953 2.3020 21 6 1.0079 -4.7931 1.9054 22 6 1.5070 -4.8549 0.4856 23 1 -0.4850 0.8401 0.0004 24 1 -0.1906 -1.7876 -1.4345 25 1 1.1777 -2.6761 -2.1463 26 1 -0.9252 -3.8995 -0.4820 27 1 -0.8335 -3.9963 -2.1400 28 1 3.8699 -2.5006 0.7571 29 1 3.8403 -4.1954 1.3113 30 1 2.0903 -1.8954 2.2780 31 1 3.2966 -2.8040 3.2184 32 1 1.3996 -3.1414 4.8170 33 1 -0.3280 -4.7455 5.5161 34 1 -1.2090 -6.3844 3.8991 35 1 -0.3549 -6.4139 1.5943 36 1 2.1953 -5.6938 0.3819 37 1 0.6616 -4.9973 -0.1875 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261359712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:09 Heat of formation + Delta-G solvation = 37.910792 kcal Electronic energy + Delta-G solvation = -18706.176118 eV Core-core repulsion = 16062.140185 eV Total energy + Delta-G solvation = -2644.035933 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.75734 -36.91240 -33.78969 -32.56087 -31.60454 -30.39443 -28.34466 -27.54978 -24.13210 -23.33033 -22.33170 -21.55335 -20.53247 -18.17871 -16.50738 -16.05117 -15.27332 -14.79774 -14.64691 -14.24999 -13.98904 -13.79573 -13.18182 -12.99202 -12.74607 -12.59276 -11.95794 -11.75711 -11.58726 -11.14703 -11.01935 -10.94134 -10.77793 -10.65056 -10.39896 -10.08166 -9.89744 -9.67641 -8.93996 -8.54671 -8.26241 -7.99834 -7.41477 -7.00579 -6.09435 -4.12704 1.88976 1.92043 3.27207 3.32407 3.35033 4.28538 4.35862 5.19574 5.21111 5.33243 5.40393 5.48249 5.58010 5.66682 5.88559 6.01265 6.06858 6.20970 6.24842 6.42052 6.54669 6.59157 6.72620 6.81469 6.89294 6.96254 7.02876 7.06897 7.09111 7.34642 7.39175 7.57836 7.72720 7.74263 7.92303 8.12373 8.33720 8.39323 8.67642 8.98543 9.52255 10.97628 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023501 B = 0.008867 C = 0.007876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.134506 B = 3156.850360 C = 3554.305380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.511 4.511 8 H 0.067 0.933 9 C 0.219 3.781 10 H 0.013 0.987 11 C 0.070 3.930 12 N -0.847 5.847 13 N -0.517 5.517 14 C 0.066 3.934 15 C -0.121 4.121 16 C -0.061 4.061 17 C -0.126 4.126 18 C -0.134 4.134 19 C -0.136 4.136 20 C -0.121 4.121 21 C -0.095 4.095 22 C 0.057 3.943 23 H 0.261 0.739 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.328 0.672 27 H 0.318 0.682 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.060 0.940 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.015 -7.869 4.223 8.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.550 4.550 8 H 0.085 0.915 9 C 0.112 3.888 10 H 0.031 0.969 11 C -0.060 4.060 12 N -0.375 5.375 13 N -0.238 5.238 14 C -0.062 4.062 15 C -0.159 4.159 16 C -0.062 4.062 17 C -0.144 4.144 18 C -0.152 4.152 19 C -0.154 4.154 20 C -0.139 4.139 21 C -0.097 4.097 22 C -0.072 4.072 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.139 0.861 27 H 0.129 0.871 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.124 0.876 31 H 0.076 0.924 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.078 0.922 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.810 -8.136 3.767 9.002 hybrid contribution -0.913 1.756 0.960 2.200 sum -0.103 -6.380 4.727 7.941 Atomic orbital electron populations 1.69908 1.05910 1.26742 1.50379 1.24954 0.94835 0.99134 0.95099 0.86643 0.79572 0.83024 0.78731 1.20152 1.21434 1.20237 1.21239 0.93468 0.89794 1.50502 0.91540 1.19241 0.89813 0.87160 0.92619 0.96926 1.22019 0.95719 0.88351 0.99946 1.59120 1.30661 1.41350 1.06335 1.62531 1.14255 1.03812 1.43244 1.21961 0.95109 0.99409 0.89769 1.21235 0.96241 0.99686 0.98705 1.19784 0.97484 0.96102 0.92801 1.21059 0.98145 0.99134 0.96058 1.20907 0.98300 0.96903 0.99061 1.20928 1.00694 0.99614 0.94134 1.21042 0.97644 0.99334 0.95907 1.20757 0.95970 0.94681 0.98279 1.22020 1.00949 0.93547 0.90662 0.92918 0.92703 0.92914 0.86065 0.87143 0.90024 0.93503 0.87555 0.92434 0.86968 0.87086 0.87054 0.86630 0.92232 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.47 11.72 55.43 0.65 -23.82 16 2 C 0.06 1.63 5.31 -17.82 -0.09 1.54 16 3 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.51 -13.18 6.36 -34.44 -0.22 -13.40 16 8 H 0.07 1.71 5.78 -52.49 -0.30 1.41 16 9 C 0.22 5.22 1.03 -68.86 -0.07 5.15 16 10 H 0.01 0.35 6.24 -51.93 -0.32 0.03 16 11 C 0.07 1.60 6.28 -3.82 -0.02 1.58 16 12 N -0.85 -15.84 6.52 -10.37 -0.07 -15.91 16 13 N -0.52 -11.10 4.87 -229.78 -1.12 -12.22 16 14 C 0.07 1.33 5.44 -3.86 -0.02 1.31 16 15 C -0.12 -2.39 5.13 -27.93 -0.14 -2.54 16 16 C -0.06 -1.19 5.10 -104.60 -0.53 -1.73 16 17 C -0.13 -2.21 9.66 -39.49 -0.38 -2.59 16 18 C -0.13 -2.11 10.05 -39.65 -0.40 -2.51 16 19 C -0.14 -2.09 10.05 -39.66 -0.40 -2.48 16 20 C -0.12 -2.00 9.65 -39.48 -0.38 -2.38 16 21 C -0.10 -1.79 5.09 -104.63 -0.53 -2.32 16 22 C 0.06 1.10 5.40 -5.16 -0.03 1.07 16 23 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 24 H 0.05 1.40 6.45 -51.93 -0.34 1.06 16 25 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.33 6.18 8.70 -39.29 -0.34 5.84 16 27 H 0.32 5.18 9.08 -39.29 -0.36 4.83 16 28 H 0.08 1.69 6.12 -51.93 -0.32 1.37 16 29 H 0.05 0.86 8.04 -51.93 -0.42 0.44 16 30 H 0.11 2.46 6.05 -51.93 -0.31 2.15 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 36 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 37 H 0.14 2.64 4.40 -51.93 -0.23 2.41 16 LS Contribution 284.34 15.07 4.28 4.28 Total: -1.00 -27.21 284.34 -9.53 -36.74 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -3.23 Total: -19.32 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.54 Total: -51.95 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.21 -9.53 -36.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261359712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.651 kcal (2) G-P(sol) polarization free energy of solvation -27.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds