Wall clock time and date at job start Mon Mar 30 2020 03:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99944 * 2 1 4 4 H 1.48499 * 109.46847 * 240.00430 * 3 2 1 5 5 H 1.48494 * 109.46984 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47061 * 120.00621 * 3 2 1 7 7 C 1.37871 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00325 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00007 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46791 * 305.45846 * 9 7 2 11 11 C 1.53003 * 109.46872 * 65.45257 * 9 7 2 12 12 N 1.46906 * 109.46810 * 182.91291 * 11 9 7 13 13 N 1.46895 * 109.47310 * 185.45564 * 9 7 2 14 14 C 1.46944 * 111.01149 * 42.18267 * 13 9 7 15 15 C 1.52889 * 108.62857 * 52.09414 * 14 13 9 16 16 C 1.50719 * 109.87862 * 50.41221 * 15 14 13 17 17 C 1.38677 * 118.49360 * 163.18313 * 16 15 14 18 18 C 1.38036 * 120.34933 * 179.83670 * 17 16 15 19 19 C 1.38256 * 119.83075 * 359.97438 * 18 17 16 20 20 C 1.38019 * 119.86750 * 0.07292 * 19 18 17 21 21 C 1.37839 * 121.66308 * 343.13261 * 16 15 14 22 22 C 1.46626 * 111.00040 * 165.11931 * 13 9 7 23 23 H 0.97003 * 120.00085 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47145 * 302.91682 * 11 9 7 25 25 H 1.09004 * 109.46874 * 62.91432 * 11 9 7 26 26 H 1.00902 * 110.99545 * 56.04911 * 12 11 9 27 27 H 1.00895 * 110.99453 * 180.02562 * 12 11 9 28 28 H 1.09004 * 109.50663 * 292.39523 * 14 13 9 29 29 H 1.08995 * 109.64262 * 171.88521 * 14 13 9 30 30 H 1.08995 * 109.39598 * 290.31384 * 15 14 13 31 31 H 1.09003 * 109.39223 * 170.50744 * 15 14 13 32 32 H 1.08001 * 119.82351 * 359.86369 * 17 16 15 33 33 H 1.08000 * 120.08246 * 179.97438 * 18 17 16 34 34 H 1.07999 * 120.06843 * 180.09123 * 19 18 17 35 35 H 1.08004 * 119.81101 * 180.02562 * 20 19 18 36 36 H 1.09008 * 109.30014 * 168.81447 * 22 13 9 37 37 H 1.09003 * 109.13249 * 49.34015 * 22 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5534 -2.5159 0.8368 11 6 0.4765 -2.6409 -1.3124 12 7 -0.3128 -3.8795 -1.2837 13 7 2.2002 -3.6126 0.1305 14 6 3.2364 -3.3071 1.1266 15 6 2.5539 -2.8711 2.4233 16 6 1.4975 -3.8745 2.8090 17 6 1.0147 -3.8604 4.1089 18 6 0.0446 -4.7600 4.5025 19 6 -0.4489 -5.6797 3.5958 20 6 0.0316 -5.6953 2.3020 21 6 1.0079 -4.7931 1.9054 22 6 1.5070 -4.8549 0.4856 23 1 -0.4850 0.8401 0.0004 24 1 -0.1906 -1.7876 -1.4345 25 1 1.1777 -2.6761 -2.1463 26 1 -0.9252 -3.8995 -0.4820 27 1 -0.8335 -3.9963 -2.1400 28 1 3.8699 -2.5006 0.7571 29 1 3.8403 -4.1954 1.3113 30 1 2.0903 -1.8954 2.2780 31 1 3.2966 -2.8040 3.2184 32 1 1.3996 -3.1414 4.8170 33 1 -0.3280 -4.7455 5.5161 34 1 -1.2090 -6.3844 3.8991 35 1 -0.3549 -6.4139 1.5943 36 1 2.1953 -5.6938 0.3819 37 1 0.6616 -4.9973 -0.1875 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261359712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:08 Heat of formation + Delta-G solvation = 20.222817 kcal Electronic energy + Delta-G solvation = -18706.943126 eV Core-core repulsion = 16062.140185 eV Total energy + Delta-G solvation = -2644.802941 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.22515 -38.43765 -35.47600 -34.41009 -33.08501 -31.88542 -29.78944 -29.32901 -26.01086 -24.84098 -23.91136 -22.89923 -22.21225 -19.78147 -18.42779 -17.46718 -16.92737 -16.33363 -16.23617 -15.83885 -15.70856 -15.27668 -14.84773 -14.54373 -14.24772 -13.98348 -13.79645 -13.34472 -13.12574 -12.84381 -12.67427 -12.64026 -12.42347 -12.14646 -11.98087 -11.76023 -11.68945 -11.36283 -10.82567 -10.54032 -9.61032 -9.41850 -9.01011 -8.70725 -8.11192 -6.19444 0.58476 0.60309 1.41598 1.42356 1.49173 2.42122 2.96988 3.18316 3.58099 3.97863 4.04276 4.12228 4.23152 4.29414 4.46986 4.48449 4.69359 4.75450 4.84621 4.88329 4.97595 5.03240 5.16016 5.24214 5.25884 5.35151 5.50396 5.54757 5.68882 5.69685 5.75666 5.84046 5.95528 6.08901 6.27560 6.42230 6.50560 6.80719 6.92398 7.02332 7.48836 8.94405 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023501 B = 0.008867 C = 0.007876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.134506 B = 3156.850360 C = 3554.305380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.018 3.982 3 Si 0.948 3.052 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.062 0.938 9 C 0.233 3.767 10 H -0.020 1.020 11 C 0.082 3.918 12 N -0.831 5.831 13 N -0.526 5.526 14 C 0.067 3.933 15 C -0.111 4.111 16 C -0.091 4.091 17 C -0.141 4.141 18 C -0.133 4.133 19 C -0.131 4.131 20 C -0.125 4.125 21 C -0.115 4.115 22 C 0.059 3.941 23 H 0.259 0.741 24 H 0.026 0.974 25 H 0.042 0.958 26 H 0.331 0.669 27 H 0.335 0.665 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.138 0.862 36 H 0.070 0.930 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.288 -9.311 5.052 10.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.774 3.226 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.080 0.920 9 C 0.125 3.875 10 H -0.002 1.002 11 C -0.049 4.049 12 N -0.359 5.359 13 N -0.247 5.247 14 C -0.062 4.062 15 C -0.150 4.150 16 C -0.092 4.092 17 C -0.159 4.159 18 C -0.151 4.151 19 C -0.149 4.149 20 C -0.143 4.143 21 C -0.116 4.116 22 C -0.070 4.070 23 H 0.068 0.932 24 H 0.044 0.956 25 H 0.060 0.940 26 H 0.142 0.858 27 H 0.148 0.852 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.138 0.862 33 H 0.159 0.841 34 H 0.164 0.836 35 H 0.155 0.845 36 H 0.088 0.912 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.514 -9.598 4.592 10.652 hybrid contribution -0.844 2.111 0.748 2.393 sum -0.329 -7.487 5.339 9.202 Atomic orbital electron populations 1.70029 1.07038 1.27066 1.51576 1.25603 0.95510 1.01958 0.95090 0.85761 0.78437 0.79569 0.78810 1.19732 1.21450 1.19778 1.21497 0.93428 0.91021 1.49679 0.91988 1.18922 0.89454 0.87454 0.91636 1.00217 1.21676 0.95322 0.88928 0.98944 1.58968 1.30864 1.38662 1.07417 1.62485 1.14140 1.03875 1.44211 1.21952 0.94809 0.99753 0.89666 1.21036 0.96770 0.98022 0.99147 1.19872 0.98394 0.96791 0.94102 1.21282 0.98935 1.00061 0.95602 1.21307 0.97170 0.95920 1.00670 1.21366 1.00582 0.99567 0.93372 1.21325 0.96811 0.99052 0.97122 1.20784 0.97273 0.95797 0.97781 1.22000 1.01092 0.92491 0.91384 0.93247 0.95594 0.93983 0.85761 0.85221 0.91365 0.91596 0.91559 0.90749 0.86156 0.84059 0.83556 0.84455 0.91182 0.84257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.69 11.72 21.44 0.25 -51.44 16 2 C 0.02 0.94 5.31 84.65 0.45 1.39 16 3 Si 0.95 43.05 29.54 68.60 2.03 45.07 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.52 -27.37 6.36 25.60 0.16 -27.21 16 8 H 0.06 3.27 5.78 -2.91 -0.02 3.25 16 9 C 0.23 11.37 1.03 44.17 0.05 11.41 16 10 H -0.02 -1.09 6.24 -2.39 -0.01 -1.11 16 11 C 0.08 3.84 6.28 86.30 0.54 4.38 16 12 N -0.83 -30.50 6.52 -186.71 -1.22 -31.72 16 13 N -0.53 -22.65 4.87 -880.89 -4.29 -26.94 16 14 C 0.07 2.69 5.44 86.26 0.47 3.16 16 15 C -0.11 -4.49 5.13 29.82 0.15 -4.34 16 16 C -0.09 -3.52 5.10 -19.85 -0.10 -3.62 16 17 C -0.14 -4.77 9.66 22.33 0.22 -4.56 16 18 C -0.13 -3.80 10.05 22.23 0.22 -3.58 16 19 C -0.13 -3.57 10.05 22.22 0.22 -3.34 16 20 C -0.12 -3.81 9.65 22.33 0.22 -3.60 16 21 C -0.11 -4.20 5.09 -19.87 -0.10 -4.30 16 22 C 0.06 2.20 5.40 85.58 0.46 2.66 16 23 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 24 H 0.03 1.36 6.45 -2.39 -0.02 1.34 16 25 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 26 H 0.33 12.23 8.70 -89.69 -0.78 11.45 16 27 H 0.33 10.51 9.08 -89.70 -0.81 9.69 16 28 H 0.07 2.89 6.12 -2.38 -0.01 2.87 16 29 H 0.07 2.38 8.04 -2.39 -0.02 2.36 16 30 H 0.07 3.20 6.05 -2.39 -0.01 3.18 16 31 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.12 3.73 8.06 -2.91 -0.02 3.71 16 33 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 34 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 35 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 36 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 37 H 0.14 5.14 4.40 -2.39 -0.01 5.13 16 Total: -1.00 -59.16 284.34 -0.77 -59.93 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: -0.50 Total: 36.63 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 2.96 Total: -31.53 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -5.25 Total: -110.10 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -59.16 -0.77 -59.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261359712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.150 kcal (2) G-P(sol) polarization free energy of solvation -59.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds