Wall clock time and date at job start Mon Mar 30 2020 04:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48533 * 110.99903 * 2 1 4 4 C 1.54933 * 103.23213 * 200.28260 * 3 2 1 5 5 C 1.54603 * 102.92018 * 37.41214 * 4 3 2 6 6 H 1.08992 * 110.38639 * 97.00339 * 5 4 3 7 7 N 1.46499 * 110.30728 * 219.12847 * 5 4 3 8 8 C 1.36935 * 119.99942 * 270.71456 * 7 5 4 9 9 H 1.07999 * 120.00083 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99632 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00227 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99548 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46845 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47399 * 299.99577 * 12 10 8 15 15 H 1.48498 * 109.47295 * 60.00184 * 12 10 8 16 16 C 1.47902 * 110.99848 * 242.60752 * 2 1 3 17 17 H 1.09002 * 109.91839 * 26.49161 * 16 2 1 18 18 C 1.50701 * 109.91649 * 265.19330 * 16 2 1 19 19 C 1.38229 * 119.99880 * 322.13395 * 18 16 2 20 20 C 1.38241 * 119.99865 * 179.78673 * 19 18 16 21 21 C 1.38236 * 119.99832 * 0.44496 * 20 19 18 22 22 C 1.38241 * 119.99919 * 359.81366 * 21 20 19 23 23 C 1.38231 * 119.99728 * 142.41458 * 18 16 2 24 24 H 1.09001 * 109.46753 * 177.39150 * 1 2 3 25 25 H 1.09002 * 109.46967 * 297.38696 * 1 2 3 26 26 H 1.08996 * 109.47624 * 57.39254 * 1 2 3 27 27 H 1.09003 * 110.66790 * 318.71905 * 3 2 1 28 28 H 1.08999 * 110.66733 * 81.67585 * 3 2 1 29 29 H 1.09006 * 110.71909 * 279.06035 * 4 3 2 30 30 H 1.08993 * 110.73044 * 155.77323 * 4 3 2 31 31 H 0.96999 * 119.99980 * 90.72525 * 7 5 4 32 32 H 0.97000 * 120.00284 * 359.97438 * 11 10 8 33 33 H 1.08001 * 120.00478 * 0.02562 * 19 18 16 34 34 H 1.07991 * 120.00049 * 180.27760 * 20 19 18 35 35 H 1.08001 * 120.00174 * 179.83196 * 21 20 19 36 36 H 1.07998 * 120.00000 * 180.02562 * 22 21 20 37 37 H 1.07998 * 120.00312 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2108 -0.5228 5 6 3.2982 0.1055 -1.5932 6 1 3.2142 0.5473 -2.5860 7 7 4.4390 -0.8122 -1.5407 8 6 5.5586 -0.5559 -2.2863 9 1 5.6009 0.3228 -2.9127 10 6 6.6393 -1.4257 -2.2370 11 7 6.5881 -2.4964 -1.4732 12 14 8.1669 -1.0758 -3.2535 13 1 9.1691 -2.1478 -3.0261 14 1 7.8049 -1.0348 -4.6932 15 1 8.7410 0.2329 -2.8500 16 6 1.9990 -0.6353 -1.2260 17 1 1.2758 -0.5401 -2.0359 18 6 2.2938 -2.0898 -0.9641 19 6 2.8194 -2.4802 0.2533 20 6 3.0857 -3.8150 0.4950 21 6 2.8350 -4.7581 -0.4840 22 6 2.3144 -4.3670 -1.7034 23 6 2.0440 -3.0328 -1.9435 24 1 -0.3633 -1.0266 -0.0468 25 1 -0.3633 0.4727 0.9125 26 1 -0.3634 0.5537 -0.8656 27 1 1.4236 2.0205 -0.6729 28 1 2.0013 1.7987 1.0091 29 1 4.1115 0.8837 0.2787 30 1 3.8122 2.1353 -0.9716 31 1 4.4012 -1.6013 -0.9780 32 1 5.7953 -2.6775 -0.9445 33 1 3.0184 -1.7429 1.0170 34 1 3.4921 -4.1206 1.4478 35 1 3.0456 -5.8006 -0.2961 36 1 2.1181 -5.1039 -2.4682 37 1 1.6373 -2.7272 -2.8962 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284238595.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:42 Heat of formation + Delta-G solvation = 54.076467 kcal Electronic energy + Delta-G solvation = -18499.031349 eV Core-core repulsion = 15855.696412 eV Total energy + Delta-G solvation = -2643.334937 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.71208 -37.58984 -34.48660 -31.76488 -31.32982 -30.30825 -29.00849 -26.81960 -24.86876 -23.20455 -22.13560 -21.83384 -20.43300 -19.22224 -17.41591 -16.38965 -15.63654 -15.19827 -14.74433 -14.32023 -14.09793 -13.67939 -13.46989 -13.29815 -12.79572 -12.72753 -12.20168 -11.97765 -11.76184 -11.46860 -11.26590 -10.84647 -10.70795 -10.58409 -10.54089 -10.39310 -10.03070 -9.89101 -9.09454 -8.84421 -8.31235 -8.21195 -8.03295 -6.92767 -6.00280 -2.99397 1.95957 2.02223 3.54692 3.58511 3.76050 4.18114 4.42324 4.72797 5.09547 5.21630 5.31037 5.41423 5.44996 5.52405 5.60940 5.62196 5.68256 5.70846 5.81195 5.86336 5.96435 6.06308 6.17801 6.20919 6.30283 6.39032 6.51704 6.59224 6.68028 6.84257 7.02065 7.06504 7.09661 7.26178 7.42272 7.60282 7.88938 8.87496 9.35192 10.21212 10.37576 11.48223 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018938 B = 0.009748 C = 0.007160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.171227 B = 2871.781271 C = 3909.929365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.513 5.513 3 C 0.035 3.965 4 C -0.143 4.143 5 C 0.182 3.818 6 H 0.055 0.945 7 N -0.727 5.727 8 C -0.334 4.334 9 H 0.061 0.939 10 C -0.043 4.043 11 N -0.941 5.941 12 Si 1.078 2.922 13 H -0.285 1.285 14 H -0.297 1.297 15 H -0.296 1.296 16 C 0.093 3.907 17 H 0.055 0.945 18 C -0.045 4.045 19 C -0.090 4.090 20 C -0.120 4.120 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.113 4.113 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.024 0.976 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.378 0.622 32 H 0.258 0.742 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.011 2.118 2.442 12.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.237 5.237 3 C -0.093 4.093 4 C -0.185 4.185 5 C 0.070 3.930 6 H 0.073 0.927 7 N -0.372 5.372 8 C -0.466 4.466 9 H 0.079 0.921 10 C -0.241 4.241 11 N -0.586 5.586 12 Si 0.909 3.091 13 H -0.211 1.211 14 H -0.225 1.225 15 H -0.224 1.224 16 C -0.016 4.016 17 H 0.073 0.927 18 C -0.046 4.046 19 C -0.108 4.108 20 C -0.139 4.139 21 C -0.142 4.142 22 C -0.139 4.139 23 C -0.131 4.131 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.216 0.784 32 H 0.070 0.930 33 H 0.142 0.858 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.284 1.438 2.364 10.650 hybrid contribution -1.801 0.894 -0.275 2.029 sum -12.085 2.331 2.089 12.484 Atomic orbital electron populations 1.22476 0.88534 1.01704 1.00273 1.64551 1.07269 1.14958 1.36913 1.23214 0.96470 0.89192 1.00428 1.23311 0.94482 1.00060 1.00609 1.20905 0.86401 0.89724 0.96003 0.92671 1.42769 1.13419 1.26956 1.54102 1.20039 0.94986 1.09047 1.22486 0.92104 1.25683 1.01286 0.95118 1.02035 1.70819 1.31187 1.27124 1.29425 0.83282 0.75793 0.75148 0.74893 1.21081 1.22451 1.22406 1.21725 0.97479 0.91970 0.90442 0.92728 1.19349 0.97723 0.93493 0.94003 1.20905 0.97441 0.95488 0.96987 1.21073 1.00155 0.93411 0.99222 1.20984 1.00031 0.99098 0.94067 1.20925 1.00316 0.95717 0.96948 1.20838 1.01121 0.92991 0.98197 0.91606 0.91626 0.95796 0.94346 0.90680 0.90591 0.91989 0.78389 0.93042 0.85796 0.86671 0.86865 0.86869 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.40 60.07 0.56 0.81 16 2 N -0.51 -8.12 4.37 -232.16 -1.02 -9.13 16 3 C 0.03 0.52 6.56 -1.90 -0.01 0.51 16 4 C -0.14 -2.64 6.78 -24.87 -0.17 -2.81 16 5 C 0.18 3.79 3.62 -66.57 -0.24 3.55 16 6 H 0.06 1.17 8.09 -51.93 -0.42 0.75 16 7 N -0.73 -18.62 4.68 -52.11 -0.24 -18.87 16 8 C -0.33 -9.57 9.96 -15.06 -0.15 -9.72 16 9 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 10 C -0.04 -1.27 5.50 -17.43 -0.10 -1.37 16 11 N -0.94 -29.63 13.70 55.49 0.76 -28.87 16 12 Si 1.08 26.48 29.92 -169.99 -5.09 21.40 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.30 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 16 C 0.09 1.67 2.66 -67.79 -0.18 1.49 16 17 H 0.05 0.92 7.64 -51.93 -0.40 0.53 16 18 C -0.04 -0.85 3.61 -104.63 -0.38 -1.23 16 19 C -0.09 -1.73 7.54 -39.58 -0.30 -2.03 16 20 C -0.12 -2.18 10.05 -39.58 -0.40 -2.58 16 21 C -0.12 -2.15 10.05 -39.58 -0.40 -2.55 16 22 C -0.12 -2.12 10.05 -39.58 -0.40 -2.52 16 23 C -0.11 -2.09 9.68 -39.58 -0.38 -2.47 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.02 0.28 8.00 -51.93 -0.42 -0.13 16 27 H 0.04 0.52 7.96 -51.93 -0.41 0.11 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.57 8.06 -51.93 -0.42 1.15 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.38 9.91 3.30 -40.82 -0.13 9.77 16 32 H 0.26 8.11 6.77 -40.82 -0.28 7.84 16 33 H 0.12 2.42 7.67 -52.49 -0.40 2.02 16 34 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 36 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.11 1.88 8.05 -52.49 -0.42 1.45 16 LS Contribution 299.55 15.07 4.51 4.51 Total: -1.00 -31.94 299.55 -9.07 -41.01 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -5.47 Total: 10.86 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -2.54 Total: -20.91 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.50 Total: -56.87 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: -5.09 Total: 21.40 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.94 -9.07 -41.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284238595.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.085 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds