Wall clock time and date at job start Mon Mar 30 2020 04:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48533 * 110.99903 * 2 1 4 4 C 1.54933 * 103.23213 * 200.28260 * 3 2 1 5 5 C 1.54603 * 102.92018 * 37.41214 * 4 3 2 6 6 H 1.08992 * 110.38639 * 97.00339 * 5 4 3 7 7 N 1.46499 * 110.30728 * 219.12847 * 5 4 3 8 8 C 1.36935 * 119.99942 * 270.71456 * 7 5 4 9 9 H 1.07999 * 120.00083 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99632 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00227 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99548 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46845 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47399 * 299.99577 * 12 10 8 15 15 H 1.48498 * 109.47295 * 60.00184 * 12 10 8 16 16 C 1.47902 * 110.99848 * 242.60752 * 2 1 3 17 17 H 1.09002 * 109.91839 * 26.49161 * 16 2 1 18 18 C 1.50701 * 109.91649 * 265.19330 * 16 2 1 19 19 C 1.38229 * 119.99880 * 322.13395 * 18 16 2 20 20 C 1.38241 * 119.99865 * 179.78673 * 19 18 16 21 21 C 1.38236 * 119.99832 * 0.44496 * 20 19 18 22 22 C 1.38241 * 119.99919 * 359.81366 * 21 20 19 23 23 C 1.38231 * 119.99728 * 142.41458 * 18 16 2 24 24 H 1.09001 * 109.46753 * 177.39150 * 1 2 3 25 25 H 1.09002 * 109.46967 * 297.38696 * 1 2 3 26 26 H 1.08996 * 109.47624 * 57.39254 * 1 2 3 27 27 H 1.09003 * 110.66790 * 318.71905 * 3 2 1 28 28 H 1.08999 * 110.66733 * 81.67585 * 3 2 1 29 29 H 1.09006 * 110.71909 * 279.06035 * 4 3 2 30 30 H 1.08993 * 110.73044 * 155.77323 * 4 3 2 31 31 H 0.96999 * 119.99980 * 90.72525 * 7 5 4 32 32 H 0.97000 * 120.00284 * 359.97438 * 11 10 8 33 33 H 1.08001 * 120.00478 * 0.02562 * 19 18 16 34 34 H 1.07991 * 120.00049 * 180.27760 * 20 19 18 35 35 H 1.08001 * 120.00174 * 179.83196 * 21 20 19 36 36 H 1.07998 * 120.00000 * 180.02562 * 22 21 20 37 37 H 1.07998 * 120.00312 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2108 -0.5228 5 6 3.2982 0.1055 -1.5932 6 1 3.2142 0.5473 -2.5860 7 7 4.4390 -0.8122 -1.5407 8 6 5.5586 -0.5559 -2.2863 9 1 5.6009 0.3228 -2.9127 10 6 6.6393 -1.4257 -2.2370 11 7 6.5881 -2.4964 -1.4732 12 14 8.1669 -1.0758 -3.2535 13 1 9.1691 -2.1478 -3.0261 14 1 7.8049 -1.0348 -4.6932 15 1 8.7410 0.2329 -2.8500 16 6 1.9990 -0.6353 -1.2260 17 1 1.2758 -0.5401 -2.0359 18 6 2.2938 -2.0898 -0.9641 19 6 2.8194 -2.4802 0.2533 20 6 3.0857 -3.8150 0.4950 21 6 2.8350 -4.7581 -0.4840 22 6 2.3144 -4.3670 -1.7034 23 6 2.0440 -3.0328 -1.9435 24 1 -0.3633 -1.0266 -0.0468 25 1 -0.3633 0.4727 0.9125 26 1 -0.3634 0.5537 -0.8656 27 1 1.4236 2.0205 -0.6729 28 1 2.0013 1.7987 1.0091 29 1 4.1115 0.8837 0.2787 30 1 3.8122 2.1353 -0.9716 31 1 4.4012 -1.6013 -0.9780 32 1 5.7953 -2.6775 -0.9445 33 1 3.0184 -1.7429 1.0170 34 1 3.4921 -4.1206 1.4478 35 1 3.0456 -5.8006 -0.2961 36 1 2.1181 -5.1039 -2.4682 37 1 1.6373 -2.7272 -2.8962 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284238595.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:42 Heat of formation + Delta-G solvation = 34.594659 kcal Electronic energy + Delta-G solvation = -18499.876144 eV Core-core repulsion = 15855.696412 eV Total energy + Delta-G solvation = -2644.179732 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.13164 -38.95589 -36.36544 -33.52102 -32.73045 -31.71247 -30.71169 -28.30676 -26.25979 -25.20439 -23.54194 -23.24043 -21.83876 -20.71676 -19.46084 -17.82978 -17.22340 -16.64564 -16.23546 -15.81410 -15.64945 -15.41725 -15.00995 -14.74970 -14.17564 -14.01063 -13.78564 -13.36804 -13.26106 -12.81654 -12.76191 -12.50773 -12.41528 -12.12269 -11.99764 -11.88557 -11.80360 -11.52294 -11.19027 -10.89728 -9.71732 -9.45862 -9.42995 -9.02085 -8.31061 -5.23450 0.54940 0.60082 1.57146 1.67451 1.83701 2.73512 2.88810 3.06228 3.44522 3.68734 3.79960 3.92585 4.07507 4.15166 4.21029 4.30913 4.32913 4.36404 4.52437 4.57786 4.63532 4.71370 4.78050 4.81090 4.97314 5.02160 5.07833 5.18655 5.23819 5.33437 5.61144 5.65184 5.68561 5.69085 5.96901 6.15358 6.21471 6.59075 7.20303 8.12545 8.24771 9.20467 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018938 B = 0.009748 C = 0.007160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.171227 B = 2871.781271 C = 3909.929365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.524 5.524 3 C 0.046 3.954 4 C -0.138 4.138 5 C 0.169 3.831 6 H 0.048 0.952 7 N -0.741 5.741 8 C -0.332 4.332 9 H 0.061 0.939 10 C -0.103 4.103 11 N -0.972 5.972 12 Si 1.125 2.875 13 H -0.294 1.294 14 H -0.280 1.280 15 H -0.280 1.280 16 C 0.102 3.898 17 H 0.066 0.934 18 C -0.057 4.057 19 C -0.105 4.105 20 C -0.133 4.133 21 C -0.131 4.131 22 C -0.127 4.127 23 C -0.131 4.131 24 H 0.062 0.938 25 H 0.085 0.915 26 H 0.037 0.963 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.373 0.627 32 H 0.245 0.755 33 H 0.113 0.887 34 H 0.130 0.870 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.071 2.818 2.050 13.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.248 5.248 3 C -0.081 4.081 4 C -0.179 4.179 5 C 0.058 3.942 6 H 0.066 0.934 7 N -0.386 5.386 8 C -0.464 4.464 9 H 0.079 0.921 10 C -0.295 4.295 11 N -0.619 5.619 12 Si 0.950 3.050 13 H -0.220 1.220 14 H -0.207 1.207 15 H -0.206 1.206 16 C -0.008 4.008 17 H 0.084 0.916 18 C -0.058 4.058 19 C -0.124 4.124 20 C -0.151 4.151 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.150 4.150 24 H 0.081 0.919 25 H 0.104 0.896 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.211 0.789 32 H 0.056 0.944 33 H 0.131 0.869 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.404 2.185 1.977 11.778 hybrid contribution -1.547 0.708 -0.136 1.706 sum -12.950 2.892 1.841 13.397 Atomic orbital electron populations 1.22535 0.86357 1.02076 1.01870 1.64547 1.09312 1.15284 1.35672 1.23186 0.93900 0.89244 1.01817 1.23118 0.96684 0.99146 0.98956 1.21161 0.86510 0.90043 0.96437 0.93370 1.42944 1.14053 1.27800 1.53850 1.20379 0.95882 1.08438 1.21689 0.92056 1.27064 1.04455 0.94967 1.03040 1.70931 1.30957 1.28792 1.31243 0.82661 0.72550 0.75330 0.74418 1.21973 1.20659 1.20622 1.21546 0.96130 0.91296 0.91782 0.91634 1.19530 0.97920 0.94262 0.94072 1.20922 0.98448 0.95878 0.97151 1.21370 1.00069 0.93331 1.00317 1.21346 0.99442 1.00319 0.93815 1.21308 0.99552 0.96004 0.97660 1.21124 1.01635 0.93600 0.98617 0.91909 0.89638 0.94481 0.92126 0.88856 0.93375 0.91322 0.78915 0.94433 0.86924 0.85206 0.84323 0.84375 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.40 127.69 1.20 1.65 16 2 N -0.52 -15.67 4.37 -888.43 -3.88 -19.56 16 3 C 0.05 1.27 6.56 86.65 0.57 1.84 16 4 C -0.14 -5.01 6.78 31.80 0.22 -4.80 16 5 C 0.17 7.00 3.62 45.87 0.17 7.16 16 6 H 0.05 2.04 8.09 -2.39 -0.02 2.02 16 7 N -0.74 -38.48 4.68 -318.78 -1.49 -39.97 16 8 C -0.33 -19.15 9.96 84.03 0.84 -18.31 16 9 H 0.06 3.44 7.83 -2.91 -0.02 3.42 16 10 C -0.10 -6.16 5.50 84.86 0.47 -5.69 16 11 N -0.97 -62.22 13.70 21.65 0.30 -61.93 16 12 Si 1.12 53.40 29.92 68.60 2.05 55.45 16 13 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 14 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 16 C 0.10 3.58 2.66 44.31 0.12 3.70 16 17 H 0.07 2.12 7.64 -2.39 -0.02 2.10 16 18 C -0.06 -2.17 3.61 -19.87 -0.07 -2.24 16 19 C -0.11 -4.12 7.54 22.27 0.17 -3.95 16 20 C -0.13 -4.82 10.05 22.27 0.22 -4.60 16 21 C -0.13 -4.46 10.05 22.27 0.22 -4.23 16 22 C -0.13 -4.34 10.05 22.27 0.22 -4.12 16 23 C -0.13 -4.79 9.68 22.27 0.22 -4.58 16 24 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.04 0.76 8.00 -2.39 -0.02 0.74 16 27 H 0.06 1.43 7.96 -2.39 -0.02 1.42 16 28 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.05 2.00 8.06 -2.38 -0.02 1.98 16 30 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.37 20.04 3.30 -92.71 -0.31 19.73 16 32 H 0.25 15.84 6.77 -92.71 -0.63 15.21 16 33 H 0.11 4.54 7.67 -2.91 -0.02 4.52 16 34 H 0.13 4.16 8.06 -2.92 -0.02 4.13 16 35 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 36 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 37 H 0.12 4.03 8.05 -2.91 -0.02 4.00 16 Total: -1.00 -68.80 299.55 2.40 -66.40 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: 0.88 Total: 37.76 kcal Atomic # 6 Polarization: -42.72 SS G_CDS: 4.55 Total: -38.16 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -5.08 Total: -121.45 kcal Atomic # 14 Polarization: 53.40 SS G_CDS: 2.05 Total: 55.45 kcal Total: -68.80 2.40 -66.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284238595.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.997 kcal (2) G-P(sol) polarization free energy of solvation -68.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds