Wall clock time and date at job start Mon Mar 30 2020 04:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48557 * 111.00043 * 2 1 4 4 C 1.54381 * 104.59504 * 200.95457 * 3 2 1 5 5 C 1.54258 * 105.05756 * 23.85225 * 4 3 2 6 6 H 1.08999 * 110.32319 * 241.09723 * 5 4 3 7 7 N 1.46506 * 110.41160 * 118.94040 * 5 4 3 8 8 C 1.36931 * 119.99745 * 89.30394 * 7 5 4 9 9 H 1.07999 * 120.00263 * 0.02562 * 8 7 5 10 10 C 1.38821 * 119.99593 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99748 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00100 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.46960 * 90.00038 * 12 10 8 14 14 H 1.48496 * 109.47068 * 209.99701 * 12 10 8 15 15 H 1.48504 * 109.47208 * 329.99844 * 12 10 8 16 16 C 1.48555 * 111.00490 * 244.57498 * 2 1 3 17 17 H 1.09002 * 110.50922 * 40.21304 * 16 2 1 18 18 C 1.50696 * 110.41585 * 277.82299 * 16 2 1 19 19 C 1.38230 * 120.00346 * 144.82238 * 18 16 2 20 20 C 1.38235 * 120.00326 * 180.02562 * 19 18 16 21 21 C 1.38234 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.38239 * 120.00062 * 0.02871 * 21 20 19 23 23 C 1.38235 * 120.00123 * 359.97128 * 22 21 20 24 24 H 1.09003 * 109.46633 * 175.42076 * 1 2 3 25 25 H 1.08995 * 109.47664 * 295.42501 * 1 2 3 26 26 H 1.08999 * 109.46479 * 55.42715 * 1 2 3 27 27 H 1.08999 * 110.41386 * 82.17640 * 3 2 1 28 28 H 1.08998 * 110.51025 * 319.78329 * 3 2 1 29 29 H 1.08998 * 110.32465 * 264.95586 * 4 3 2 30 30 H 1.09001 * 110.32075 * 142.74809 * 4 3 2 31 31 H 0.96998 * 119.99613 * 269.31553 * 7 5 4 32 32 H 0.96998 * 119.99953 * 180.02562 * 11 10 8 33 33 H 1.08000 * 120.00356 * 359.97438 * 19 18 16 34 34 H 1.08000 * 120.00616 * 179.70664 * 20 19 18 35 35 H 1.08001 * 120.00299 * 179.97438 * 21 20 19 36 36 H 1.08005 * 120.00087 * 180.02562 * 22 21 20 37 37 H 1.07999 * 120.00181 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4434 1.2501 -0.5343 5 6 3.4434 -0.0540 -1.3583 6 1 4.1484 -0.7693 -0.9349 7 7 3.7809 0.2250 -2.7564 8 6 5.0892 0.2137 -3.1602 9 1 5.8723 -0.0013 -2.4482 10 6 5.4090 0.4786 -4.4848 11 7 6.6666 0.4672 -4.8731 12 14 4.0546 0.8511 -5.7162 13 1 3.8001 2.3139 -5.7445 14 1 4.4737 0.3955 -7.0659 15 1 2.8134 0.1403 -5.3169 16 6 2.0015 -0.5954 -1.2525 17 1 1.4106 -0.2731 -2.1099 18 6 2.0105 -2.0993 -1.1573 19 6 1.7489 -2.8645 -2.2783 20 6 1.7566 -4.2441 -2.1908 21 6 2.0265 -4.8584 -0.9823 22 6 2.2881 -4.0932 0.1389 23 6 2.2804 -2.7137 0.0514 24 1 -0.3633 -1.0244 -0.0821 25 1 -0.3634 0.4412 0.9281 26 1 -0.3632 0.5832 -0.8462 27 1 2.0079 1.7917 1.0120 28 1 1.4105 2.0228 -0.6592 29 1 4.1483 1.1748 0.2936 30 1 3.6938 2.0995 -1.1698 31 1 3.0775 0.4179 -3.3958 32 1 6.8901 0.6527 -5.7986 33 1 1.5376 -2.3846 -3.2225 34 1 1.5475 -4.8419 -3.0656 35 1 2.0321 -5.9363 -0.9137 36 1 2.4994 -4.5733 1.0831 37 1 2.4852 -2.1159 0.9272 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284238603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:46 Heat of formation + Delta-G solvation = 50.624848 kcal Electronic energy + Delta-G solvation = -18061.852996 eV Core-core repulsion = 15418.368385 eV Total energy + Delta-G solvation = -2643.484610 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.69050 -37.85183 -34.45911 -31.80159 -31.54974 -30.55823 -29.85080 -27.04695 -25.14300 -23.02083 -22.51382 -21.77589 -20.16583 -19.74965 -17.66287 -16.66521 -15.65240 -15.34232 -14.79020 -14.39269 -14.30944 -13.69950 -13.35512 -13.27687 -13.02573 -12.75767 -12.58050 -12.38475 -11.81910 -11.55991 -11.48913 -11.15801 -10.92968 -10.76978 -10.69911 -10.44045 -10.41224 -9.97380 -9.60471 -8.98510 -8.59394 -8.38105 -8.34775 -7.27889 -5.77972 -3.13850 1.66020 1.73670 3.34355 3.36875 3.42939 4.03481 4.18929 4.56979 4.98366 5.13162 5.18686 5.23639 5.27704 5.38928 5.47436 5.51379 5.53571 5.58701 5.69197 5.77925 5.85175 5.90680 5.93351 6.01535 6.18579 6.32712 6.34829 6.40880 6.69007 6.74958 6.78098 6.79876 6.93718 7.10706 7.26827 7.32667 7.98642 8.40962 9.18206 9.90672 10.09749 11.40369 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018579 B = 0.008490 C = 0.006852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.747805 B = 3297.186312 C = 4085.697177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.507 5.507 3 C 0.034 3.966 4 C -0.147 4.147 5 C 0.192 3.808 6 H 0.070 0.930 7 N -0.742 5.742 8 C -0.241 4.241 9 H 0.091 0.909 10 C 0.006 3.994 11 N -0.933 5.933 12 Si 0.882 3.118 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.279 1.279 16 C 0.089 3.911 17 H 0.058 0.942 18 C -0.056 4.056 19 C -0.108 4.108 20 C -0.124 4.124 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.092 4.092 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.025 0.975 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.359 0.641 32 H 0.259 0.741 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.167 -4.765 9.844 17.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.231 5.231 3 C -0.094 4.094 4 C -0.188 4.188 5 C 0.081 3.919 6 H 0.088 0.912 7 N -0.384 5.384 8 C -0.370 4.370 9 H 0.109 0.891 10 C -0.190 4.190 11 N -0.580 5.580 12 Si 0.712 3.288 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.205 1.205 16 C -0.020 4.020 17 H 0.076 0.924 18 C -0.057 4.057 19 C -0.127 4.127 20 C -0.142 4.142 21 C -0.147 4.147 22 C -0.147 4.147 23 C -0.111 4.111 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.044 0.956 27 H 0.093 0.907 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.192 0.808 32 H 0.069 0.931 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.745 -5.079 10.293 17.151 hybrid contribution -1.198 0.752 -1.812 2.298 sum -13.943 -4.326 8.481 16.883 Atomic orbital electron populations 1.22480 0.88584 1.01741 1.00538 1.65214 1.07581 1.15650 1.34621 1.23111 0.96589 0.89221 1.00505 1.23127 0.94416 1.01209 1.00057 1.20880 0.91506 0.93677 0.85791 0.91239 1.42816 1.05576 1.85432 1.04609 1.19062 0.82909 1.40444 0.94620 0.89081 1.24652 0.95681 1.01853 0.96776 1.69695 1.15603 1.55927 1.16797 0.86591 0.82121 0.78177 0.81866 1.21140 1.21692 1.20485 1.21912 0.97919 0.91062 0.91091 0.92440 1.19581 0.98490 0.94111 0.93520 1.21018 0.99785 0.93824 0.98051 1.21022 1.01033 0.94559 0.97565 1.21050 1.01071 0.99338 0.93242 1.21109 1.01234 0.94134 0.98262 1.21020 0.98272 0.93973 0.97805 0.91528 0.91512 0.95649 0.90652 0.94236 0.91718 0.90327 0.80790 0.93056 0.86523 0.86559 0.86757 0.86586 0.85272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.45 60.07 0.57 0.76 16 2 N -0.51 -7.37 4.47 -231.73 -1.04 -8.40 16 3 C 0.03 0.48 6.49 -2.18 -0.01 0.47 16 4 C -0.15 -2.54 6.79 -25.35 -0.17 -2.71 16 5 C 0.19 3.77 3.25 -66.55 -0.22 3.55 16 6 H 0.07 1.48 7.78 -51.93 -0.40 1.08 16 7 N -0.74 -17.43 4.88 -52.09 -0.25 -17.68 16 8 C -0.24 -6.74 10.44 -15.06 -0.16 -6.89 16 9 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 10 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 11 N -0.93 -29.25 13.97 55.49 0.78 -28.47 16 12 Si 0.88 22.05 27.74 -169.99 -4.71 17.33 16 13 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 15 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 16 C 0.09 1.50 2.18 -67.23 -0.15 1.35 16 17 H 0.06 1.01 7.51 -51.93 -0.39 0.62 16 18 C -0.06 -0.93 4.61 -104.62 -0.48 -1.41 16 19 C -0.11 -1.76 9.69 -39.59 -0.38 -2.15 16 20 C -0.12 -1.79 10.05 -39.58 -0.40 -2.18 16 21 C -0.13 -1.72 10.05 -39.58 -0.40 -2.12 16 22 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 23 C -0.09 -1.40 9.33 -39.58 -0.37 -1.76 16 24 H 0.07 0.81 7.96 -51.93 -0.41 0.40 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.02 0.31 7.98 -51.93 -0.41 -0.11 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.04 0.56 7.91 -51.93 -0.41 0.15 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.08 1.48 7.95 -51.93 -0.41 1.07 16 31 H 0.36 8.32 5.43 -40.82 -0.22 8.10 16 32 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 33 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 37 H 0.13 1.88 7.60 -52.49 -0.40 1.49 16 LS Contribution 302.79 15.07 4.56 4.56 Total: -1.00 -30.56 302.79 -8.95 -39.50 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.62 Total: 8.32 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -2.66 Total: -15.16 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.51 Total: -54.56 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.56 -8.95 -39.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284238603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.126 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds