Wall clock time and date at job start Mon Mar 30 2020 04:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48557 * 111.00043 * 2 1 4 4 C 1.54381 * 104.59504 * 200.95457 * 3 2 1 5 5 C 1.54258 * 105.05756 * 23.85225 * 4 3 2 6 6 H 1.08999 * 110.32319 * 241.09723 * 5 4 3 7 7 N 1.46506 * 110.41160 * 118.94040 * 5 4 3 8 8 C 1.36931 * 119.99745 * 89.30394 * 7 5 4 9 9 H 1.07999 * 120.00263 * 0.02562 * 8 7 5 10 10 C 1.38821 * 119.99593 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99748 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00100 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.46960 * 90.00038 * 12 10 8 14 14 H 1.48496 * 109.47068 * 209.99701 * 12 10 8 15 15 H 1.48504 * 109.47208 * 329.99844 * 12 10 8 16 16 C 1.48555 * 111.00490 * 244.57498 * 2 1 3 17 17 H 1.09002 * 110.50922 * 40.21304 * 16 2 1 18 18 C 1.50696 * 110.41585 * 277.82299 * 16 2 1 19 19 C 1.38230 * 120.00346 * 144.82238 * 18 16 2 20 20 C 1.38235 * 120.00326 * 180.02562 * 19 18 16 21 21 C 1.38234 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.38239 * 120.00062 * 0.02871 * 21 20 19 23 23 C 1.38235 * 120.00123 * 359.97128 * 22 21 20 24 24 H 1.09003 * 109.46633 * 175.42076 * 1 2 3 25 25 H 1.08995 * 109.47664 * 295.42501 * 1 2 3 26 26 H 1.08999 * 109.46479 * 55.42715 * 1 2 3 27 27 H 1.08999 * 110.41386 * 82.17640 * 3 2 1 28 28 H 1.08998 * 110.51025 * 319.78329 * 3 2 1 29 29 H 1.08998 * 110.32465 * 264.95586 * 4 3 2 30 30 H 1.09001 * 110.32075 * 142.74809 * 4 3 2 31 31 H 0.96998 * 119.99613 * 269.31553 * 7 5 4 32 32 H 0.96998 * 119.99953 * 180.02562 * 11 10 8 33 33 H 1.08000 * 120.00356 * 359.97438 * 19 18 16 34 34 H 1.08000 * 120.00616 * 179.70664 * 20 19 18 35 35 H 1.08001 * 120.00299 * 179.97438 * 21 20 19 36 36 H 1.08005 * 120.00087 * 180.02562 * 22 21 20 37 37 H 1.07999 * 120.00181 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4434 1.2501 -0.5343 5 6 3.4434 -0.0540 -1.3583 6 1 4.1484 -0.7693 -0.9349 7 7 3.7809 0.2250 -2.7564 8 6 5.0892 0.2137 -3.1602 9 1 5.8723 -0.0013 -2.4482 10 6 5.4090 0.4786 -4.4848 11 7 6.6666 0.4672 -4.8731 12 14 4.0546 0.8511 -5.7162 13 1 3.8001 2.3139 -5.7445 14 1 4.4737 0.3955 -7.0659 15 1 2.8134 0.1403 -5.3169 16 6 2.0015 -0.5954 -1.2525 17 1 1.4106 -0.2731 -2.1099 18 6 2.0105 -2.0993 -1.1573 19 6 1.7489 -2.8645 -2.2783 20 6 1.7566 -4.2441 -2.1908 21 6 2.0265 -4.8584 -0.9823 22 6 2.2881 -4.0932 0.1389 23 6 2.2804 -2.7137 0.0514 24 1 -0.3633 -1.0244 -0.0821 25 1 -0.3634 0.4412 0.9281 26 1 -0.3632 0.5832 -0.8462 27 1 2.0079 1.7917 1.0120 28 1 1.4105 2.0228 -0.6592 29 1 4.1483 1.1748 0.2936 30 1 3.6938 2.0995 -1.1698 31 1 3.0775 0.4179 -3.3958 32 1 6.8901 0.6527 -5.7986 33 1 1.5376 -2.3846 -3.2225 34 1 1.5475 -4.8419 -3.0656 35 1 2.0321 -5.9363 -0.9137 36 1 2.4994 -4.5733 1.0831 37 1 2.4852 -2.1159 0.9272 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284238603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:45 Heat of formation + Delta-G solvation = 31.404349 kcal Electronic energy + Delta-G solvation = -18062.686459 eV Core-core repulsion = 15418.368385 eV Total energy + Delta-G solvation = -2644.318074 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.94315 -39.05442 -36.26752 -33.68313 -32.76708 -31.67672 -31.47531 -28.41452 -26.46776 -24.84679 -23.68394 -22.99856 -21.46135 -21.27830 -19.65480 -17.87101 -17.16355 -16.53112 -16.29151 -16.02889 -15.42759 -15.04021 -14.97974 -14.63190 -14.43809 -14.13637 -13.96050 -13.67467 -13.24085 -13.19507 -12.84115 -12.60850 -12.44660 -12.28074 -12.11536 -11.85243 -11.82044 -11.66905 -11.52950 -11.02815 -9.72689 -9.62340 -9.52955 -9.25101 -8.03841 -5.37575 0.52017 0.60314 1.33402 1.36891 1.44013 2.45398 2.86911 2.98176 3.26409 3.69964 3.76957 3.86283 4.04390 4.16594 4.23147 4.25678 4.33363 4.39707 4.54673 4.61502 4.63916 4.71845 4.81456 4.87779 4.99413 5.06057 5.16061 5.24109 5.24765 5.36219 5.62006 5.67502 5.69940 5.75092 5.92212 6.10675 6.20518 6.21739 7.04442 7.79400 7.98917 9.17804 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018579 B = 0.008490 C = 0.006852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.747805 B = 3297.186312 C = 4085.697177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.506 5.506 3 C 0.042 3.958 4 C -0.144 4.144 5 C 0.184 3.816 6 H 0.045 0.955 7 N -0.743 5.743 8 C -0.225 4.225 9 H 0.055 0.945 10 C -0.061 4.061 11 N -0.983 5.983 12 Si 0.952 3.048 13 H -0.278 1.278 14 H -0.295 1.295 15 H -0.255 1.255 16 C 0.102 3.898 17 H 0.049 0.951 18 C -0.076 4.076 19 C -0.133 4.133 20 C -0.131 4.131 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.102 4.102 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.027 0.973 27 H 0.101 0.899 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.363 0.637 32 H 0.258 0.742 33 H 0.108 0.892 34 H 0.135 0.865 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.670 -5.386 10.906 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.229 5.229 3 C -0.086 4.086 4 C -0.184 4.184 5 C 0.075 3.925 6 H 0.063 0.937 7 N -0.386 5.386 8 C -0.356 4.356 9 H 0.073 0.927 10 C -0.252 4.252 11 N -0.633 5.633 12 Si 0.779 3.221 13 H -0.204 1.204 14 H -0.222 1.222 15 H -0.180 1.180 16 C -0.008 4.008 17 H 0.067 0.933 18 C -0.077 4.077 19 C -0.151 4.151 20 C -0.149 4.149 21 C -0.145 4.145 22 C -0.147 4.147 23 C -0.120 4.120 24 H 0.085 0.915 25 H 0.108 0.892 26 H 0.046 0.954 27 H 0.119 0.881 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.196 0.804 32 H 0.067 0.933 33 H 0.126 0.874 34 H 0.153 0.847 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.300 -5.704 11.409 19.919 hybrid contribution -0.374 0.868 -2.012 2.223 sum -15.673 -4.836 9.397 18.903 Atomic orbital electron populations 1.22541 0.86721 1.02094 1.01838 1.65247 1.09246 1.15476 1.32968 1.23095 0.94150 0.89401 1.01912 1.22975 0.97082 0.98865 0.99528 1.21029 0.93097 0.94525 0.83825 0.93659 1.42745 1.03798 1.85645 1.06439 1.18964 0.84131 1.38556 0.93953 0.92688 1.25439 0.98128 1.02719 0.98936 1.69877 1.18132 1.58157 1.17158 0.85462 0.79763 0.78347 0.78525 1.20381 1.22195 1.17990 1.21655 0.95485 0.91681 0.91943 0.93273 1.19647 0.99883 0.93854 0.94304 1.21137 1.01225 0.94979 0.97780 1.21322 1.00579 0.94009 0.98973 1.21443 0.99579 1.00989 0.92537 1.21475 0.99977 0.93564 0.99665 1.21139 0.98532 0.94971 0.97358 0.91548 0.89207 0.95417 0.88066 0.93606 0.91245 0.92109 0.80363 0.93349 0.87423 0.84710 0.83711 0.83805 0.85083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.45 127.69 1.21 1.56 16 2 N -0.51 -13.66 4.47 -887.05 -3.96 -17.62 16 3 C 0.04 1.11 6.49 86.45 0.56 1.67 16 4 C -0.14 -4.91 6.79 31.49 0.21 -4.70 16 5 C 0.18 7.30 3.25 45.88 0.15 7.45 16 6 H 0.05 2.00 7.78 -2.39 -0.02 1.98 16 7 N -0.74 -35.28 4.88 -318.70 -1.56 -36.84 16 8 C -0.23 -13.00 10.44 84.04 0.88 -12.12 16 9 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 10 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 11 N -0.98 -63.62 13.97 21.65 0.30 -63.31 16 12 Si 0.95 45.97 27.74 68.60 1.90 47.87 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 14 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 15 H -0.26 -11.19 6.52 99.48 0.65 -10.54 16 16 C 0.10 3.34 2.18 44.31 0.10 3.44 16 17 H 0.05 1.69 7.51 -2.39 -0.02 1.67 16 18 C -0.08 -2.46 4.61 -19.87 -0.09 -2.55 16 19 C -0.13 -4.24 9.69 22.27 0.22 -4.03 16 20 C -0.13 -3.56 10.05 22.27 0.22 -3.33 16 21 C -0.13 -3.05 10.05 22.27 0.22 -2.83 16 22 C -0.13 -3.17 10.05 22.27 0.22 -2.95 16 23 C -0.10 -2.93 9.33 22.27 0.21 -2.72 16 24 H 0.07 1.46 7.96 -2.39 -0.02 1.45 16 25 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.03 0.60 7.98 -2.39 -0.02 0.58 16 27 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.05 1.17 7.91 -2.39 -0.02 1.15 16 29 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.06 2.29 7.95 -2.39 -0.02 2.27 16 31 H 0.36 16.62 5.43 -92.71 -0.50 16.11 16 32 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 33 H 0.11 3.52 8.06 -2.91 -0.02 3.49 16 34 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 35 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 36 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 37 H 0.13 3.64 7.60 -2.91 -0.02 3.62 16 Total: -1.00 -67.41 302.79 1.74 -65.67 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.48 Total: 28.48 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: 4.57 Total: -24.25 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -5.22 Total: -117.78 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.90 Total: 47.87 kcal Total: -67.41 1.74 -65.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284238603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.078 kcal (2) G-P(sol) polarization free energy of solvation -67.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds