Wall clock time and date at job start Mon Mar 30 2020 04:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48536 * 110.99521 * 2 1 4 4 C 1.54942 * 103.22418 * 159.72350 * 3 2 1 5 5 C 1.54591 * 102.91948 * 322.58184 * 4 3 2 6 6 H 1.09006 * 110.39894 * 263.00077 * 5 4 3 7 7 N 1.46503 * 110.31073 * 140.87591 * 5 4 3 8 8 C 1.36938 * 119.99854 * 89.27947 * 7 5 4 9 9 H 1.08002 * 120.00204 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99822 * 180.02562 * 8 7 5 11 11 N 1.31614 * 119.99909 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 120.00042 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.46767 * 90.00183 * 12 10 8 14 14 H 1.48493 * 109.47061 * 210.00046 * 12 10 8 15 15 H 1.48500 * 109.47212 * 330.00348 * 12 10 8 16 16 C 1.47900 * 110.99996 * 117.39533 * 2 1 3 17 17 H 1.08998 * 109.91806 * 333.51013 * 16 2 1 18 18 C 1.50691 * 109.91764 * 94.60824 * 16 2 1 19 19 C 1.38241 * 120.00187 * 38.26887 * 18 16 2 20 20 C 1.38233 * 119.99952 * 179.76408 * 19 18 16 21 21 C 1.38231 * 120.00231 * 0.49129 * 20 19 18 22 22 C 1.38231 * 120.00008 * 359.78549 * 21 20 19 23 23 C 1.38236 * 120.00176 * 218.54134 * 18 16 2 24 24 H 1.08997 * 109.47010 * 60.12563 * 1 2 3 25 25 H 1.09003 * 109.46716 * 180.12808 * 1 2 3 26 26 H 1.08999 * 109.47154 * 300.12302 * 1 2 3 27 27 H 1.09004 * 110.66813 * 278.15215 * 3 2 1 28 28 H 1.09000 * 110.66721 * 41.28713 * 3 2 1 29 29 H 1.08990 * 110.72581 * 80.94382 * 4 3 2 30 30 H 1.08999 * 110.72411 * 204.23016 * 4 3 2 31 31 H 0.96997 * 119.99896 * 269.29130 * 7 5 4 32 32 H 0.97001 * 120.00075 * 179.97438 * 11 10 8 33 33 H 1.08004 * 119.99513 * 0.02562 * 19 18 16 34 34 H 1.08004 * 119.99540 * 180.25384 * 20 19 18 35 35 H 1.07997 * 120.00367 * 179.76633 * 21 20 19 36 36 H 1.07997 * 120.00413 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.00061 * 0.02562 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2107 0.5227 5 6 3.2982 0.1055 1.5930 6 1 3.2142 0.5472 2.5860 7 7 4.4390 -0.8123 1.5406 8 6 5.5587 -0.5560 2.2861 9 1 5.6007 0.3224 2.9130 10 6 6.6398 -1.4253 2.2361 11 7 7.7158 -1.1793 2.9530 12 14 6.5668 -2.9451 1.1523 13 1 7.0876 -2.6150 -0.1988 14 1 7.3952 -4.0214 1.7526 15 1 5.1598 -3.4069 1.0413 16 6 1.9990 -0.6353 1.2259 17 1 1.2758 -0.5402 2.0359 18 6 2.2893 -2.0909 0.9654 19 6 2.8197 -2.4834 -0.2493 20 6 3.0905 -3.8180 -0.4864 21 6 2.8214 -4.7615 0.4873 22 6 2.2857 -4.3698 1.6999 23 6 2.0198 -3.0345 1.9391 24 1 -0.3633 0.5119 -0.8911 25 1 -0.3633 -1.0277 0.0023 26 1 -0.3633 0.5157 0.8889 27 1 2.0040 1.7978 -1.0096 28 1 1.4236 2.0205 0.6729 29 1 4.1115 0.8838 -0.2787 30 1 3.8122 2.1353 0.9716 31 1 4.4012 -1.6013 0.9777 32 1 8.4711 -1.7870 2.9183 33 1 3.0265 -1.7466 -1.0115 34 1 3.5088 -4.1240 -1.4340 35 1 3.0294 -5.8047 0.3007 36 1 2.0750 -5.1069 2.4606 37 1 1.6010 -2.7285 2.8863 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284238605.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:47 Heat of formation + Delta-G solvation = 57.526789 kcal Electronic energy + Delta-G solvation = -18586.075830 eV Core-core repulsion = 15942.890510 eV Total energy + Delta-G solvation = -2643.185320 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.82306 -37.71001 -34.39868 -31.76192 -31.42546 -30.47235 -29.66837 -27.10886 -25.10621 -22.97569 -22.18904 -21.94483 -20.43303 -19.26721 -17.72000 -16.56476 -15.53462 -15.35184 -14.69218 -14.35372 -14.17946 -13.92168 -13.53539 -13.04827 -12.91237 -12.79676 -12.27831 -12.13058 -11.77836 -11.59008 -11.43624 -11.11386 -10.81606 -10.69151 -10.59175 -10.45145 -10.33567 -9.83930 -9.52401 -8.86427 -8.42069 -8.27373 -8.16632 -7.19241 -5.71266 -3.06123 1.81384 1.87194 3.46062 3.53349 3.56956 4.10535 4.30770 4.68583 5.00151 5.15010 5.22488 5.32055 5.37815 5.38536 5.51701 5.56269 5.56359 5.60691 5.75908 5.79164 5.92156 5.93896 6.04784 6.16570 6.16817 6.34030 6.40787 6.47440 6.61160 6.79371 6.88882 6.94104 6.96394 7.20607 7.33181 7.46345 8.06081 8.47871 9.29144 10.01481 10.22326 11.46484 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018580 B = 0.011690 C = 0.008213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.642801 B = 2394.711291 C = 3408.404001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.515 5.515 3 C 0.034 3.966 4 C -0.143 4.143 5 C 0.182 3.818 6 H 0.064 0.936 7 N -0.740 5.740 8 C -0.244 4.244 9 H 0.088 0.912 10 C 0.007 3.993 11 N -0.936 5.936 12 Si 0.863 3.137 13 H -0.287 1.287 14 H -0.295 1.295 15 H -0.251 1.251 16 C 0.092 3.908 17 H 0.058 0.942 18 C -0.044 4.044 19 C -0.094 4.094 20 C -0.124 4.124 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.112 4.112 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.025 0.975 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.371 0.629 32 H 0.258 0.742 33 H 0.127 0.873 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.122 -1.105 -6.073 16.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.238 5.238 3 C -0.094 4.094 4 C -0.184 4.184 5 C 0.071 3.929 6 H 0.082 0.918 7 N -0.385 5.385 8 C -0.374 4.374 9 H 0.106 0.894 10 C -0.188 4.188 11 N -0.583 5.583 12 Si 0.692 3.308 13 H -0.214 1.214 14 H -0.221 1.221 15 H -0.176 1.176 16 C -0.017 4.017 17 H 0.076 0.924 18 C -0.045 4.045 19 C -0.113 4.113 20 C -0.142 4.142 21 C -0.146 4.146 22 C -0.140 4.140 23 C -0.130 4.130 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.043 0.957 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.209 0.791 32 H 0.068 0.932 33 H 0.145 0.855 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.794 -1.310 -6.370 16.161 hybrid contribution -0.054 -0.667 0.049 0.671 sum -14.848 -1.977 -6.321 16.258 Atomic orbital electron populations 1.22476 0.88441 1.01802 1.00268 1.64552 1.07376 1.15113 1.36801 1.23230 0.96446 0.89112 1.00567 1.23286 0.94530 1.00170 1.00451 1.20951 0.85824 0.89540 0.96635 0.91827 1.43076 1.14258 1.26920 1.54282 1.19073 0.91167 1.07840 1.19290 0.89447 1.24616 0.96125 0.98544 0.99556 1.69705 1.05724 1.38710 1.44192 0.86825 0.78989 0.84308 0.80659 1.21359 1.22132 1.17577 1.21736 0.97634 0.91685 0.90669 0.92369 1.19415 0.97419 0.93750 0.93912 1.20958 0.97722 0.95476 0.97129 1.21087 1.00384 0.93573 0.99168 1.20994 1.00264 0.99033 0.94290 1.20964 1.00188 0.95852 0.96969 1.20903 1.00811 0.92879 0.98448 0.91617 0.91628 0.95671 0.90573 0.94141 0.90489 0.91552 0.79098 0.93222 0.85546 0.86741 0.86893 0.86678 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.41 60.07 0.57 0.79 16 2 N -0.51 -7.57 4.39 -232.16 -1.02 -8.59 16 3 C 0.03 0.48 6.56 -1.89 -0.01 0.47 16 4 C -0.14 -2.48 6.78 -24.87 -0.17 -2.65 16 5 C 0.18 3.55 3.62 -66.57 -0.24 3.31 16 6 H 0.06 1.27 8.09 -51.93 -0.42 0.85 16 7 N -0.74 -17.72 4.49 -52.11 -0.23 -17.95 16 8 C -0.24 -6.95 10.44 -15.06 -0.16 -7.11 16 9 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 10 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 11 N -0.94 -29.96 13.97 55.49 0.78 -29.19 16 12 Si 0.86 22.49 27.74 -169.99 -4.71 17.78 16 13 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 14 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 15 H -0.25 -6.09 4.72 56.52 0.27 -5.83 16 16 C 0.09 1.54 2.66 -67.80 -0.18 1.36 16 17 H 0.06 0.91 7.58 -51.93 -0.39 0.51 16 18 C -0.04 -0.78 3.64 -104.63 -0.38 -1.16 16 19 C -0.09 -1.69 7.36 -39.58 -0.29 -1.98 16 20 C -0.12 -2.08 8.92 -39.59 -0.35 -2.43 16 21 C -0.13 -2.05 9.65 -39.59 -0.38 -2.43 16 22 C -0.12 -1.96 10.05 -39.58 -0.40 -2.36 16 23 C -0.11 -1.91 9.68 -39.58 -0.38 -2.29 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.02 0.28 7.99 -51.93 -0.42 -0.14 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.04 0.51 8.00 -51.93 -0.42 0.10 16 29 H 0.08 1.47 8.06 -51.93 -0.42 1.05 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.37 8.76 2.33 -40.82 -0.10 8.67 16 32 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 33 H 0.13 2.27 7.68 -52.48 -0.40 1.86 16 34 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 35 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 36 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.11 1.77 8.05 -52.49 -0.42 1.35 16 LS Contribution 294.66 15.07 4.44 4.44 Total: -1.00 -32.02 294.66 -8.86 -40.88 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -5.64 Total: 9.00 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -2.48 Total: -16.36 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.48 Total: -55.73 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.78 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.02 -8.86 -40.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284238605.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.408 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds