Wall clock time and date at job start Mon Mar 30 2020 04:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48536 * 110.99521 * 2 1 4 4 C 1.54942 * 103.22418 * 159.72350 * 3 2 1 5 5 C 1.54591 * 102.91948 * 322.58184 * 4 3 2 6 6 H 1.09006 * 110.39894 * 263.00077 * 5 4 3 7 7 N 1.46503 * 110.31073 * 140.87591 * 5 4 3 8 8 C 1.36938 * 119.99854 * 89.27947 * 7 5 4 9 9 H 1.08002 * 120.00204 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99822 * 180.02562 * 8 7 5 11 11 N 1.31614 * 119.99909 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 120.00042 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.46767 * 90.00183 * 12 10 8 14 14 H 1.48493 * 109.47061 * 210.00046 * 12 10 8 15 15 H 1.48500 * 109.47212 * 330.00348 * 12 10 8 16 16 C 1.47900 * 110.99996 * 117.39533 * 2 1 3 17 17 H 1.08998 * 109.91806 * 333.51013 * 16 2 1 18 18 C 1.50691 * 109.91764 * 94.60824 * 16 2 1 19 19 C 1.38241 * 120.00187 * 38.26887 * 18 16 2 20 20 C 1.38233 * 119.99952 * 179.76408 * 19 18 16 21 21 C 1.38231 * 120.00231 * 0.49129 * 20 19 18 22 22 C 1.38231 * 120.00008 * 359.78549 * 21 20 19 23 23 C 1.38236 * 120.00176 * 218.54134 * 18 16 2 24 24 H 1.08997 * 109.47010 * 60.12563 * 1 2 3 25 25 H 1.09003 * 109.46716 * 180.12808 * 1 2 3 26 26 H 1.08999 * 109.47154 * 300.12302 * 1 2 3 27 27 H 1.09004 * 110.66813 * 278.15215 * 3 2 1 28 28 H 1.09000 * 110.66721 * 41.28713 * 3 2 1 29 29 H 1.08990 * 110.72581 * 80.94382 * 4 3 2 30 30 H 1.08999 * 110.72411 * 204.23016 * 4 3 2 31 31 H 0.96997 * 119.99896 * 269.29130 * 7 5 4 32 32 H 0.97001 * 120.00075 * 179.97438 * 11 10 8 33 33 H 1.08004 * 119.99513 * 0.02562 * 19 18 16 34 34 H 1.08004 * 119.99540 * 180.25384 * 20 19 18 35 35 H 1.07997 * 120.00367 * 179.76633 * 21 20 19 36 36 H 1.07997 * 120.00413 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.00061 * 0.02562 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2107 0.5227 5 6 3.2982 0.1055 1.5930 6 1 3.2142 0.5472 2.5860 7 7 4.4390 -0.8123 1.5406 8 6 5.5587 -0.5560 2.2861 9 1 5.6007 0.3224 2.9130 10 6 6.6398 -1.4253 2.2361 11 7 7.7158 -1.1793 2.9530 12 14 6.5668 -2.9451 1.1523 13 1 7.0876 -2.6150 -0.1988 14 1 7.3952 -4.0214 1.7526 15 1 5.1598 -3.4069 1.0413 16 6 1.9990 -0.6353 1.2259 17 1 1.2758 -0.5402 2.0359 18 6 2.2893 -2.0909 0.9654 19 6 2.8197 -2.4834 -0.2493 20 6 3.0905 -3.8180 -0.4864 21 6 2.8214 -4.7615 0.4873 22 6 2.2857 -4.3698 1.6999 23 6 2.0198 -3.0345 1.9391 24 1 -0.3633 0.5119 -0.8911 25 1 -0.3633 -1.0277 0.0023 26 1 -0.3633 0.5157 0.8889 27 1 2.0040 1.7978 -1.0096 28 1 1.4236 2.0205 0.6729 29 1 4.1115 0.8838 -0.2787 30 1 3.8122 2.1353 0.9716 31 1 4.4012 -1.6013 0.9777 32 1 8.4711 -1.7870 2.9183 33 1 3.0265 -1.7466 -1.0115 34 1 3.5088 -4.1240 -1.4340 35 1 3.0294 -5.8047 0.3007 36 1 2.0750 -5.1069 2.4606 37 1 1.6010 -2.7285 2.8863 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284238605.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:47 Heat of formation + Delta-G solvation = 37.258205 kcal Electronic energy + Delta-G solvation = -18586.954741 eV Core-core repulsion = 15942.890510 eV Total energy + Delta-G solvation = -2644.064231 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.13256 -38.95532 -36.19934 -33.66989 -32.71654 -31.73806 -31.29782 -28.48641 -26.39060 -24.83870 -23.49186 -23.22708 -21.73916 -20.74390 -19.76977 -17.86579 -16.94391 -16.71588 -16.15903 -15.97045 -15.60890 -15.32670 -14.97671 -14.65928 -14.15825 -14.09493 -13.88211 -13.55908 -13.16594 -13.10951 -12.84263 -12.65485 -12.46225 -12.15732 -12.00107 -11.95277 -11.77456 -11.70130 -11.43160 -10.96685 -9.69762 -9.46538 -9.40494 -9.24793 -8.01432 -5.32353 0.54472 0.59803 1.37372 1.39812 1.50520 2.50352 2.90290 3.09397 3.29446 3.58611 3.81702 3.94877 4.08734 4.17826 4.22921 4.33562 4.38337 4.39198 4.56112 4.63313 4.66381 4.75398 4.80636 4.84570 5.02806 5.07073 5.13063 5.20352 5.26025 5.38915 5.63116 5.68471 5.71074 5.79016 5.99626 6.17986 6.20741 6.25260 7.11811 7.89897 8.10956 9.19502 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018580 B = 0.011690 C = 0.008213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.642801 B = 2394.711291 C = 3408.404001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.523 5.523 3 C 0.046 3.954 4 C -0.140 4.140 5 C 0.167 3.833 6 H 0.053 0.947 7 N -0.743 5.743 8 C -0.222 4.222 9 H 0.057 0.943 10 C -0.061 4.061 11 N -0.985 5.985 12 Si 0.927 3.073 13 H -0.287 1.287 14 H -0.302 1.302 15 H -0.226 1.226 16 C 0.102 3.898 17 H 0.070 0.930 18 C -0.060 4.060 19 C -0.111 4.111 20 C -0.136 4.136 21 C -0.135 4.135 22 C -0.128 4.128 23 C -0.129 4.129 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.035 0.965 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.375 0.625 32 H 0.255 0.745 33 H 0.120 0.880 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.363 -1.947 -7.318 18.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.247 5.247 3 C -0.082 4.082 4 C -0.181 4.181 5 C 0.058 3.942 6 H 0.071 0.929 7 N -0.389 5.389 8 C -0.354 4.354 9 H 0.075 0.925 10 C -0.253 4.253 11 N -0.636 5.636 12 Si 0.755 3.245 13 H -0.214 1.214 14 H -0.230 1.230 15 H -0.150 1.150 16 C -0.008 4.008 17 H 0.087 0.913 18 C -0.061 4.061 19 C -0.129 4.129 20 C -0.154 4.154 21 C -0.153 4.153 22 C -0.146 4.146 23 C -0.147 4.147 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.113 0.887 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.213 0.787 32 H 0.063 0.937 33 H 0.138 0.862 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.112 -2.129 -7.641 18.861 hybrid contribution 0.565 -0.317 0.467 0.799 sum -16.547 -2.447 -7.174 18.200 Atomic orbital electron populations 1.22531 0.86377 1.02237 1.01693 1.64562 1.09287 1.15270 1.35569 1.23195 0.93845 0.89255 1.01891 1.23121 0.96880 0.99079 0.99017 1.21217 0.86053 0.89933 0.97004 0.92864 1.43084 1.14146 1.27983 1.53718 1.19067 0.92401 1.06041 1.17852 0.92484 1.25355 0.96047 1.02084 1.01776 1.69871 1.06718 1.40211 1.46786 0.85810 0.79984 0.80324 0.78396 1.21366 1.22974 1.14952 1.21545 0.96034 0.91207 0.91981 0.91254 1.19590 0.97989 0.94288 0.94233 1.21032 0.98609 0.96063 0.97215 1.21420 1.00312 0.93341 1.00332 1.21388 0.99538 1.00369 0.93958 1.21351 0.99455 0.96056 0.97752 1.21188 1.01192 0.93490 0.98846 0.89735 0.91760 0.94603 0.88698 0.92253 0.92498 0.91497 0.78676 0.93664 0.86221 0.84889 0.84224 0.84249 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.41 127.69 1.20 1.61 16 2 N -0.52 -14.03 4.39 -888.42 -3.90 -17.93 16 3 C 0.05 1.15 6.56 86.65 0.57 1.72 16 4 C -0.14 -4.73 6.78 31.80 0.22 -4.51 16 5 C 0.17 6.45 3.62 45.87 0.17 6.62 16 6 H 0.05 2.14 8.09 -2.38 -0.02 2.12 16 7 N -0.74 -35.43 4.49 -318.77 -1.43 -36.86 16 8 C -0.22 -12.92 10.44 84.03 0.88 -12.05 16 9 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 10 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 11 N -0.98 -64.83 13.97 21.65 0.30 -64.53 16 12 Si 0.93 46.96 27.74 68.60 1.90 48.86 16 13 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 14 H -0.30 -15.63 7.11 99.48 0.71 -14.92 16 15 H -0.23 -10.34 4.72 99.48 0.47 -9.87 16 16 C 0.10 3.22 2.66 44.31 0.12 3.33 16 17 H 0.07 2.01 7.58 -2.39 -0.02 1.99 16 18 C -0.06 -2.02 3.64 -19.87 -0.07 -2.09 16 19 C -0.11 -3.75 7.36 22.27 0.16 -3.58 16 20 C -0.14 -4.21 8.92 22.27 0.20 -4.01 16 21 C -0.13 -3.89 9.65 22.27 0.21 -3.68 16 22 C -0.13 -3.77 10.05 22.27 0.22 -3.54 16 23 C -0.13 -4.11 9.68 22.27 0.22 -3.90 16 24 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.04 0.67 7.99 -2.39 -0.02 0.65 16 27 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.06 1.30 8.00 -2.39 -0.02 1.28 16 29 H 0.06 2.14 8.06 -2.39 -0.02 2.12 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.37 17.32 2.33 -92.71 -0.22 17.10 16 32 H 0.25 16.09 8.31 -92.71 -0.77 15.32 16 33 H 0.12 4.13 7.68 -2.91 -0.02 4.11 16 34 H 0.13 3.50 8.06 -2.91 -0.02 3.47 16 35 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 36 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 37 H 0.13 3.61 8.05 -2.91 -0.02 3.59 16 Total: -1.00 -69.58 294.66 2.02 -67.56 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.58 Total: 30.26 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 4.56 Total: -27.36 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -5.03 Total: -119.32 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.90 Total: 48.86 kcal Total: -69.58 2.02 -67.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284238605.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.816 kcal (2) G-P(sol) polarization free energy of solvation -69.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds