Wall clock time and date at job start Mon Mar 30 2020 03:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99683 * 2 1 4 4 H 1.48499 * 109.47061 * 270.00083 * 3 2 1 5 5 H 1.48502 * 109.47133 * 30.00151 * 3 2 1 6 6 H 1.48498 * 109.47120 * 149.99910 * 3 2 1 7 7 C 1.37876 * 120.00498 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99761 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00230 * 180.02562 * 7 2 1 10 10 N 1.46894 * 109.47315 * 179.97438 * 9 7 2 11 11 C 1.48562 * 111.00344 * 169.99740 * 10 9 7 12 12 C 1.54379 * 104.69842 * 159.09785 * 11 10 9 13 13 H 1.09004 * 110.32625 * 95.08726 * 12 11 10 14 14 C 1.50700 * 110.32171 * 217.18976 * 12 11 10 15 15 C 1.38232 * 120.00030 * 58.27596 * 14 12 11 16 16 C 1.38234 * 120.00147 * 179.80795 * 15 14 12 17 17 C 1.38234 * 120.00111 * 0.39707 * 16 15 14 18 18 C 1.38234 * 119.99692 * 359.85701 * 17 16 15 19 19 C 1.38233 * 120.00177 * 238.54445 * 14 12 11 20 20 C 1.54257 * 105.06256 * 336.08765 * 12 11 10 21 21 H 1.09004 * 110.32547 * 241.10341 * 20 12 11 22 22 N 1.46901 * 110.32602 * 118.99825 * 20 12 11 23 23 C 1.48856 * 111.13147 * 285.31860 * 10 9 7 24 24 H 0.97003 * 120.00499 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47786 * 59.99409 * 9 7 2 26 26 H 1.09009 * 109.47111 * 299.99514 * 9 7 2 27 27 H 1.09002 * 110.41176 * 40.25880 * 11 10 9 28 28 H 1.09002 * 110.41204 * 277.93787 * 11 10 9 29 29 H 1.08004 * 120.00124 * 359.97438 * 15 14 12 30 30 H 1.08002 * 120.00168 * 180.23142 * 16 15 14 31 31 H 1.07998 * 120.00382 * 179.83211 * 17 16 15 32 32 H 1.08001 * 120.00265 * 179.97438 * 18 17 16 33 33 H 1.08007 * 119.99915 * 359.97438 * 19 14 12 34 34 H 1.00889 * 111.00042 * 179.97438 * 22 20 12 35 35 H 1.00900 * 110.99682 * 303.95463 * 22 20 12 36 36 H 1.09003 * 110.39541 * 82.21242 * 23 10 9 37 37 H 1.08998 * 110.39292 * 319.79096 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5115 -1.1939 0.0000 10 7 4.0013 -2.5788 -0.0001 11 6 5.4666 -2.6254 -0.2404 12 6 5.9099 -3.9989 0.3074 13 1 5.9410 -4.7349 -0.4960 14 6 7.2604 -3.8882 0.9671 15 6 7.4446 -3.0142 2.0221 16 6 8.6823 -2.9155 2.6298 17 6 9.7379 -3.6848 2.1772 18 6 9.5550 -4.5549 1.1188 19 6 8.3162 -4.6565 0.5136 20 6 4.8359 -4.3818 1.3464 21 1 5.2854 -4.4896 2.3335 22 7 4.1666 -5.6287 0.9526 23 6 3.8339 -3.2073 1.3389 24 1 -0.4851 0.8400 0.0004 25 1 3.8746 -0.6806 0.8904 26 1 3.8752 -0.6795 -0.8896 27 1 5.9662 -1.8213 0.2999 28 1 5.6793 -2.5549 -1.3071 29 1 6.6209 -2.4104 2.3734 30 1 8.8253 -2.2354 3.4565 31 1 10.7055 -3.6057 2.6502 32 1 10.3797 -5.1556 0.7648 33 1 8.1733 -5.3365 -0.3132 34 1 3.4617 -5.8890 1.6259 35 1 3.7719 -5.5506 0.0272 36 1 2.8153 -3.5758 1.4608 37 1 4.0780 -2.4944 2.1263 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304196089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:17 Heat of formation + Delta-G solvation = 29.571487 kcal Electronic energy + Delta-G solvation = -17664.239184 eV Core-core repulsion = 15019.841631 eV Total energy + Delta-G solvation = -2644.397553 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.89719 -37.98902 -34.01890 -32.41434 -32.07571 -30.88925 -28.87079 -27.22342 -26.17908 -22.90258 -22.43964 -21.60455 -20.21763 -19.57925 -17.06425 -16.75968 -15.72342 -15.56821 -14.72187 -14.65026 -14.45702 -14.09435 -13.77949 -13.36259 -13.14370 -12.75128 -12.61593 -12.42509 -11.95813 -11.48587 -11.39693 -11.27255 -11.05442 -10.87395 -10.59286 -10.50210 -10.41078 -9.87485 -9.35522 -8.90651 -8.72544 -8.60083 -8.35393 -7.61903 -6.09416 -4.07098 1.37175 1.41385 3.24887 3.32442 3.33897 3.78676 4.37862 4.53988 4.73623 4.92461 4.96717 5.05309 5.11197 5.14903 5.24148 5.32631 5.51434 5.53133 5.57574 5.73287 5.81632 6.02397 6.06774 6.16221 6.22136 6.29918 6.42949 6.49173 6.51604 6.68523 6.75528 6.81684 7.02225 7.38290 7.46297 7.69542 7.78864 7.81843 8.59437 8.98747 9.52183 11.03788 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.029427 B = 0.005759 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.274180 B = 4860.901156 C = 5454.139345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.508 4.508 8 H 0.079 0.921 9 C 0.152 3.848 10 N -0.494 5.494 11 C 0.033 3.967 12 C -0.049 4.049 13 H 0.092 0.908 14 C -0.060 4.060 15 C -0.116 4.116 16 C -0.119 4.119 17 C -0.131 4.131 18 C -0.121 4.121 19 C -0.113 4.113 20 C 0.095 3.905 21 H 0.081 0.919 22 N -0.839 5.839 23 C 0.011 3.989 24 H 0.264 0.736 25 H -0.009 1.009 26 H 0.024 0.976 27 H 0.039 0.961 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.339 0.661 35 H 0.348 0.652 36 H 0.081 0.919 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.865 -8.024 3.778 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.701 3.299 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.546 4.546 8 H 0.097 0.903 9 C 0.025 3.975 10 N -0.218 5.218 11 C -0.096 4.096 12 C -0.068 4.068 13 H 0.110 0.890 14 C -0.061 4.061 15 C -0.134 4.134 16 C -0.137 4.137 17 C -0.149 4.149 18 C -0.139 4.139 19 C -0.132 4.132 20 C -0.018 4.018 21 H 0.099 0.901 22 N -0.367 5.367 23 C -0.119 4.119 24 H 0.074 0.926 25 H 0.009 0.991 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.151 0.849 35 H 0.161 0.839 36 H 0.099 0.901 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 17.105 -8.504 3.421 19.406 hybrid contribution -0.083 2.185 0.599 2.267 sum 17.022 -6.318 4.020 18.596 Atomic orbital electron populations 1.69888 1.06112 1.26873 1.51002 1.24898 0.94736 0.98834 0.94816 0.86876 0.80250 0.84066 0.78663 1.20071 1.21124 1.19367 1.20958 0.88569 0.94691 1.50390 0.90337 1.20341 0.97402 0.84526 0.95242 1.65449 1.10074 1.20513 1.25763 1.23259 0.90935 0.94599 1.00805 1.20972 0.90319 0.98092 0.97463 0.88970 1.19856 0.95032 0.95625 0.95568 1.21075 0.97425 0.98620 0.96262 1.21115 0.93151 0.99511 0.99958 1.21087 0.98757 0.97376 0.97643 1.21105 0.97180 0.98999 0.96657 1.21077 0.92590 0.99349 1.00136 1.22303 0.93504 0.88453 0.97540 0.90108 1.59037 1.37005 1.32703 1.07999 1.23905 0.99903 0.96425 0.91707 0.92621 0.99098 0.95784 0.94286 0.90568 0.86219 0.86323 0.86482 0.86339 0.86064 0.84903 0.83923 0.90063 0.94337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.51 -14.43 9.54 -34.44 -0.33 -14.75 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 9 C 0.15 3.68 3.66 -4.98 -0.02 3.66 16 10 N -0.49 -10.12 5.33 -231.15 -1.23 -11.36 16 11 C 0.03 0.56 5.90 -2.18 -0.01 0.54 16 12 C -0.05 -0.71 3.02 -90.39 -0.27 -0.98 16 13 H 0.09 1.31 7.73 -51.93 -0.40 0.91 16 14 C -0.06 -0.81 4.75 -104.63 -0.50 -1.31 16 15 C -0.12 -1.53 8.07 -39.58 -0.32 -1.85 16 16 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 17 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 18 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 19 C -0.11 -1.36 9.68 -39.58 -0.38 -1.75 16 20 C 0.09 1.40 3.59 -66.33 -0.24 1.16 16 21 H 0.08 1.17 7.28 -51.93 -0.38 0.79 16 22 N -0.84 -11.46 9.17 -3.49 -0.03 -11.49 16 23 C 0.01 0.20 5.84 -2.01 -0.01 0.19 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H -0.01 -0.21 6.83 -51.93 -0.35 -0.57 16 26 H 0.02 0.59 7.51 -51.92 -0.39 0.20 16 27 H 0.04 0.67 6.82 -51.93 -0.35 0.32 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.12 1.64 7.79 -52.48 -0.41 1.23 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.12 1.29 7.97 -52.48 -0.42 0.87 16 34 H 0.34 4.20 9.08 -39.30 -0.36 3.84 16 35 H 0.35 4.93 8.99 -39.29 -0.35 4.57 16 36 H 0.08 1.59 8.06 -51.93 -0.42 1.17 16 37 H 0.04 0.72 7.76 -51.93 -0.40 0.32 16 LS Contribution 300.85 15.07 4.53 4.53 Total: -1.00 -30.46 300.85 -9.52 -39.97 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.52 Total: 6.73 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -3.37 Total: -18.47 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.49 Total: -49.61 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.46 -9.52 -39.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304196089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.546 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds