Wall clock time and date at job start Mon Mar 30 2020 03:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99683 * 2 1 4 4 H 1.48499 * 109.47061 * 270.00083 * 3 2 1 5 5 H 1.48502 * 109.47133 * 30.00151 * 3 2 1 6 6 H 1.48498 * 109.47120 * 149.99910 * 3 2 1 7 7 C 1.37876 * 120.00498 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99761 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00230 * 180.02562 * 7 2 1 10 10 N 1.46894 * 109.47315 * 179.97438 * 9 7 2 11 11 C 1.48562 * 111.00344 * 169.99740 * 10 9 7 12 12 C 1.54379 * 104.69842 * 159.09785 * 11 10 9 13 13 H 1.09004 * 110.32625 * 95.08726 * 12 11 10 14 14 C 1.50700 * 110.32171 * 217.18976 * 12 11 10 15 15 C 1.38232 * 120.00030 * 58.27596 * 14 12 11 16 16 C 1.38234 * 120.00147 * 179.80795 * 15 14 12 17 17 C 1.38234 * 120.00111 * 0.39707 * 16 15 14 18 18 C 1.38234 * 119.99692 * 359.85701 * 17 16 15 19 19 C 1.38233 * 120.00177 * 238.54445 * 14 12 11 20 20 C 1.54257 * 105.06256 * 336.08765 * 12 11 10 21 21 H 1.09004 * 110.32547 * 241.10341 * 20 12 11 22 22 N 1.46901 * 110.32602 * 118.99825 * 20 12 11 23 23 C 1.48856 * 111.13147 * 285.31860 * 10 9 7 24 24 H 0.97003 * 120.00499 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47786 * 59.99409 * 9 7 2 26 26 H 1.09009 * 109.47111 * 299.99514 * 9 7 2 27 27 H 1.09002 * 110.41176 * 40.25880 * 11 10 9 28 28 H 1.09002 * 110.41204 * 277.93787 * 11 10 9 29 29 H 1.08004 * 120.00124 * 359.97438 * 15 14 12 30 30 H 1.08002 * 120.00168 * 180.23142 * 16 15 14 31 31 H 1.07998 * 120.00382 * 179.83211 * 17 16 15 32 32 H 1.08001 * 120.00265 * 179.97438 * 18 17 16 33 33 H 1.08007 * 119.99915 * 359.97438 * 19 14 12 34 34 H 1.00889 * 111.00042 * 179.97438 * 22 20 12 35 35 H 1.00900 * 110.99682 * 303.95463 * 22 20 12 36 36 H 1.09003 * 110.39541 * 82.21242 * 23 10 9 37 37 H 1.08998 * 110.39292 * 319.79096 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5115 -1.1939 0.0000 10 7 4.0013 -2.5788 -0.0001 11 6 5.4666 -2.6254 -0.2404 12 6 5.9099 -3.9989 0.3074 13 1 5.9410 -4.7349 -0.4960 14 6 7.2604 -3.8882 0.9671 15 6 7.4446 -3.0142 2.0221 16 6 8.6823 -2.9155 2.6298 17 6 9.7379 -3.6848 2.1772 18 6 9.5550 -4.5549 1.1188 19 6 8.3162 -4.6565 0.5136 20 6 4.8359 -4.3818 1.3464 21 1 5.2854 -4.4896 2.3335 22 7 4.1666 -5.6287 0.9526 23 6 3.8339 -3.2073 1.3389 24 1 -0.4851 0.8400 0.0004 25 1 3.8746 -0.6806 0.8904 26 1 3.8752 -0.6795 -0.8896 27 1 5.9662 -1.8213 0.2999 28 1 5.6793 -2.5549 -1.3071 29 1 6.6209 -2.4104 2.3734 30 1 8.8253 -2.2354 3.4565 31 1 10.7055 -3.6057 2.6502 32 1 10.3797 -5.1556 0.7648 33 1 8.1733 -5.3365 -0.3132 34 1 3.4617 -5.8890 1.6259 35 1 3.7719 -5.5506 0.0272 36 1 2.8153 -3.5758 1.4608 37 1 4.0780 -2.4944 2.1263 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304196089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:16 Heat of formation + Delta-G solvation = 7.888536 kcal Electronic energy + Delta-G solvation = -17665.179427 eV Core-core repulsion = 15019.841631 eV Total energy + Delta-G solvation = -2645.337796 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.03468 -39.15833 -35.69665 -34.23555 -33.29222 -31.75924 -30.45057 -28.62860 -27.71640 -24.31197 -23.57159 -22.80365 -21.80534 -20.80244 -18.94429 -18.04916 -16.92195 -16.72494 -16.42184 -15.81710 -15.68510 -15.49611 -15.28602 -14.63737 -14.47023 -14.16229 -13.91199 -13.77628 -13.43813 -13.12472 -12.78196 -12.63354 -12.38174 -12.33906 -12.05495 -11.94048 -11.67321 -11.64477 -11.48007 -10.83292 -9.79558 -9.74632 -9.47718 -9.26233 -8.33312 -6.37196 0.47215 0.54075 1.30811 1.31605 1.42160 2.29541 2.88598 2.99369 3.18183 3.50817 3.75870 3.83046 4.04553 4.10694 4.19054 4.29133 4.32143 4.42870 4.48360 4.61766 4.68601 4.74629 4.78841 4.80590 4.90388 5.02623 5.10008 5.18539 5.23619 5.46964 5.62300 5.65922 5.77817 5.88043 6.03935 6.16574 6.21923 6.50186 6.58770 6.68108 7.26678 8.83394 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.029427 B = 0.005759 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.274180 B = 4860.901156 C = 5454.139345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.946 3.054 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.254 1.254 7 C -0.516 4.516 8 H 0.035 0.965 9 C 0.162 3.838 10 N -0.510 5.510 11 C 0.034 3.966 12 C -0.036 4.036 13 H 0.098 0.902 14 C -0.077 4.077 15 C -0.133 4.133 16 C -0.126 4.126 17 C -0.129 4.129 18 C -0.121 4.121 19 C -0.120 4.120 20 C 0.109 3.891 21 H 0.089 0.911 22 N -0.832 5.832 23 C 0.012 3.988 24 H 0.268 0.732 25 H -0.011 1.011 26 H 0.027 0.973 27 H 0.038 0.962 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.134 0.866 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.134 0.866 34 H 0.346 0.654 35 H 0.345 0.655 36 H 0.059 0.941 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.012 -8.057 3.969 21.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.187 4.187 3 Si 0.769 3.231 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.554 4.554 8 H 0.054 0.946 9 C 0.035 3.965 10 N -0.234 5.234 11 C -0.094 4.094 12 C -0.055 4.055 13 H 0.116 0.884 14 C -0.077 4.077 15 C -0.151 4.151 16 C -0.144 4.144 17 C -0.147 4.147 18 C -0.139 4.139 19 C -0.138 4.138 20 C -0.005 4.005 21 H 0.107 0.893 22 N -0.360 5.360 23 C -0.118 4.118 24 H 0.077 0.923 25 H 0.007 0.993 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.125 0.875 30 H 0.152 0.848 31 H 0.162 0.838 32 H 0.164 0.836 33 H 0.151 0.849 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.078 0.922 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 20.266 -8.565 3.615 22.297 hybrid contribution -1.066 2.094 0.558 2.415 sum 19.200 -6.471 4.173 20.686 Atomic orbital electron populations 1.70039 1.08065 1.28192 1.52367 1.25828 0.95599 1.03056 0.94256 0.85735 0.79224 0.78755 0.79368 1.18851 1.20462 1.17842 1.21169 0.90880 0.93221 1.50156 0.94624 1.20082 0.94595 0.86877 0.94981 1.65317 1.12760 1.18228 1.27095 1.23307 0.88443 0.96351 1.01333 1.20828 0.90966 0.96394 0.97328 0.88385 1.19764 0.94700 0.96977 0.96278 1.21090 0.97989 0.99069 0.96947 1.21365 0.92778 0.99981 1.00309 1.21463 0.99563 0.96362 0.97276 1.21464 0.97391 0.98863 0.96202 1.21287 0.92730 0.99250 1.00562 1.22193 0.92692 0.87243 0.98323 0.89291 1.59060 1.37274 1.31580 1.08108 1.23918 0.99873 0.97530 0.90480 0.92319 0.99331 0.95543 0.94376 0.90014 0.87543 0.84764 0.83770 0.83637 0.84857 0.84093 0.84169 0.92228 0.95178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 2 C 0.01 0.60 5.47 84.65 0.46 1.06 16 3 Si 0.95 44.42 27.47 68.60 1.88 46.31 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 7 C -0.52 -30.27 9.54 25.60 0.24 -30.03 16 8 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 9 C 0.16 7.93 3.66 85.56 0.31 8.24 16 10 N -0.51 -21.17 5.33 -885.23 -4.72 -25.89 16 11 C 0.03 1.13 5.90 86.45 0.51 1.64 16 12 C -0.04 -1.00 3.02 -10.65 -0.03 -1.03 16 13 H 0.10 2.62 7.73 -2.39 -0.02 2.60 16 14 C -0.08 -1.93 4.75 -19.87 -0.09 -2.02 16 15 C -0.13 -3.34 8.07 22.27 0.18 -3.16 16 16 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 17 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 18 C -0.12 -2.18 10.05 22.27 0.22 -1.95 16 19 C -0.12 -2.57 9.68 22.27 0.22 -2.35 16 20 C 0.11 3.16 3.59 45.81 0.16 3.33 16 21 H 0.09 2.50 7.28 -2.38 -0.02 2.48 16 22 N -0.83 -22.15 9.17 -164.96 -1.51 -23.66 16 23 C 0.01 0.46 5.84 86.39 0.50 0.97 16 24 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 25 H -0.01 -0.54 6.83 -2.39 -0.02 -0.55 16 26 H 0.03 1.28 7.51 -2.38 -0.02 1.26 16 27 H 0.04 1.29 6.82 -2.39 -0.02 1.27 16 28 H 0.08 2.61 8.14 -2.39 -0.02 2.60 16 29 H 0.11 2.88 7.79 -2.91 -0.02 2.86 16 30 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 33 H 0.13 2.45 7.97 -2.91 -0.02 2.42 16 34 H 0.35 8.43 9.08 -89.70 -0.81 7.62 16 35 H 0.35 9.66 8.99 -89.69 -0.81 8.85 16 36 H 0.06 2.45 8.06 -2.39 -0.02 2.43 16 37 H 0.03 1.16 7.76 -2.39 -0.02 1.14 16 Total: -1.00 -66.61 300.85 -1.52 -68.13 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: -0.61 Total: 24.08 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 3.14 Total: -29.78 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -5.93 Total: -108.73 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.31 kcal Total: -66.61 -1.52 -68.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304196089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.016 kcal (2) G-P(sol) polarization free energy of solvation -66.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds