Wall clock time and date at job start Mon Mar 30 2020 03:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99840 * 2 1 4 4 H 1.48503 * 109.47395 * 240.00198 * 3 2 1 5 5 H 1.48502 * 109.47129 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47179 * 120.00108 * 3 2 1 7 7 C 1.37875 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00046 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00047 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47148 * 180.02562 * 9 7 2 11 11 C 1.48567 * 111.00034 * 285.41588 * 10 9 7 12 12 C 1.54374 * 104.59834 * 200.95936 * 11 10 9 13 13 H 1.08996 * 110.32350 * 264.95870 * 12 11 10 14 14 N 1.46897 * 110.41025 * 142.78889 * 12 11 10 15 15 C 1.54266 * 105.05582 * 23.85477 * 12 11 10 16 16 H 1.09005 * 110.40618 * 241.05517 * 15 12 11 17 17 C 1.50698 * 110.32301 * 118.89765 * 15 12 11 18 18 C 1.38232 * 120.00233 * 302.62961 * 17 15 12 19 19 C 1.38237 * 120.00452 * 179.80636 * 18 17 15 20 20 C 1.38236 * 119.99601 * 0.40755 * 19 18 17 21 21 C 1.38228 * 120.00195 * 359.84692 * 20 19 18 22 22 C 1.38241 * 120.00263 * 359.96118 * 21 20 19 23 23 C 1.48566 * 111.00074 * 170.00195 * 10 9 7 24 24 H 0.97003 * 120.00551 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47374 * 59.99973 * 9 7 2 26 26 H 1.09001 * 109.47520 * 299.99934 * 9 7 2 27 27 H 1.09004 * 110.40948 * 319.74003 * 11 10 9 28 28 H 1.08997 * 110.40880 * 82.18055 * 11 10 9 29 29 H 1.00909 * 110.99779 * 64.31378 * 14 12 11 30 30 H 1.00899 * 110.99990 * 188.26819 * 14 12 11 31 31 H 1.08002 * 119.99701 * 0.02562 * 18 17 15 32 32 H 1.07997 * 119.99873 * 180.22769 * 19 18 17 33 33 H 1.07998 * 119.99611 * 179.83182 * 20 19 18 34 34 H 1.07999 * 120.00202 * 179.97438 * 21 20 19 35 35 H 1.07996 * 120.00268 * 179.97438 * 22 21 20 36 36 H 1.08996 * 110.40686 * 277.81685 * 23 10 9 37 37 H 1.08999 * 110.40972 * 40.13845 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 2.8319 -3.7807 -1.3376 12 6 3.3497 -5.2350 -1.3479 13 1 4.3992 -5.2652 -1.0552 14 7 3.1746 -5.8318 -2.6787 15 6 2.4824 -5.9765 -0.3098 16 1 3.1050 -6.3721 0.4927 17 6 1.7123 -7.0904 -0.9711 18 6 0.8625 -6.8122 -2.0253 19 6 0.1591 -7.8345 -2.6345 20 6 0.2993 -9.1339 -2.1841 21 6 1.1450 -9.4114 -1.1265 22 6 1.8514 -8.3896 -0.5198 23 6 1.5135 -4.9080 0.2403 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6248 -2.5571 0.8897 27 1 2.0919 -3.6351 -2.1246 28 1 3.6594 -3.0817 -1.4587 29 1 3.7378 -5.3540 -3.3662 30 1 3.3834 -6.8188 -2.6627 31 1 0.7507 -5.7966 -2.3752 32 1 -0.5020 -7.6175 -3.4605 33 1 -0.2523 -9.9321 -2.6583 34 1 1.2542 -10.4265 -0.7744 35 1 2.5119 -8.6064 0.3067 36 1 1.3484 -5.0576 1.3072 37 1 0.5662 -4.9379 -0.2981 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304196090.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:18 Heat of formation + Delta-G solvation = 34.683958 kcal Electronic energy + Delta-G solvation = -17746.585406 eV Core-core repulsion = 15102.409547 eV Total energy + Delta-G solvation = -2644.175859 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.83428 -37.69419 -34.11407 -32.38005 -31.68992 -30.64407 -28.72308 -26.97390 -25.89847 -22.87809 -22.28252 -21.63255 -20.18607 -19.24741 -16.82132 -16.15891 -15.87935 -15.22737 -15.07651 -14.58976 -14.42083 -14.00463 -13.65124 -13.15977 -12.98770 -12.68472 -12.41060 -12.02532 -11.79011 -11.28849 -11.09108 -10.98046 -10.88476 -10.64932 -10.56824 -10.44874 -10.27552 -9.83441 -9.20478 -8.79979 -8.48666 -8.38407 -8.30634 -7.39137 -6.00524 -4.01981 1.53773 1.64903 3.34813 3.38689 3.41705 3.98800 4.43083 4.58071 4.93217 4.98784 5.14363 5.15361 5.21631 5.34569 5.36533 5.45009 5.60343 5.71348 5.76966 5.84884 6.06466 6.18410 6.27554 6.38520 6.40995 6.53176 6.59706 6.64153 6.74902 6.96212 7.08608 7.21804 7.31366 7.38872 7.58561 7.79197 8.00754 8.18110 8.51944 9.05244 9.62093 11.10443 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.041963 B = 0.005014 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.095515 B = 5583.489785 C = 5745.093124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.506 4.506 8 H 0.061 0.939 9 C 0.184 3.816 10 N -0.507 5.507 11 C 0.054 3.946 12 C 0.089 3.911 13 H 0.042 0.958 14 N -0.836 5.836 15 C -0.052 4.052 16 H 0.079 0.921 17 C -0.066 4.066 18 C -0.060 4.060 19 C -0.132 4.132 20 C -0.128 4.128 21 C -0.134 4.134 22 C -0.123 4.123 23 C 0.042 3.958 24 H 0.262 0.738 25 H -0.005 1.005 26 H 0.029 0.971 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.336 0.664 30 H 0.338 0.662 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.813 -16.638 -4.378 17.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.058 3.942 10 N -0.231 5.231 11 C -0.075 4.075 12 C -0.023 4.023 13 H 0.060 0.940 14 N -0.367 5.367 15 C -0.071 4.071 16 H 0.097 0.903 17 C -0.067 4.067 18 C -0.078 4.078 19 C -0.150 4.150 20 C -0.146 4.146 21 C -0.152 4.152 22 C -0.141 4.141 23 C -0.087 4.087 24 H 0.071 0.929 25 H 0.013 0.987 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.090 0.910 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.286 -16.135 -3.872 16.915 hybrid contribution 0.764 0.552 -0.548 1.091 sum 4.050 -15.582 -4.419 16.696 Atomic orbital electron populations 1.69949 1.06057 1.26864 1.51021 1.24986 0.94857 0.99287 0.95471 0.86557 0.79429 0.82770 0.78617 1.20312 1.21360 1.20184 1.21081 0.93438 0.89880 1.50041 0.92042 1.19870 0.90200 0.87797 0.96314 1.65504 1.30003 1.02220 1.25406 1.22951 0.99430 0.92885 0.92275 1.22129 0.96733 0.95055 0.88354 0.93964 1.59049 1.63644 1.07212 1.06784 1.21027 0.96157 0.93472 0.96446 0.90262 1.19677 0.97072 0.93517 0.96421 1.21051 0.93245 0.99656 0.93841 1.21145 1.00314 0.93027 1.00519 1.21045 0.99314 0.96636 0.97568 1.20973 0.98250 0.98636 0.97306 1.21041 1.00372 0.92579 1.00076 1.23110 0.95299 0.89993 1.00282 0.92881 0.98675 0.95247 0.93346 0.90835 0.85120 0.84910 0.85438 0.86631 0.86913 0.86835 0.86740 0.91034 0.94081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.41 8.97 -34.44 -0.31 -14.72 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.18 4.87 4.59 -4.98 -0.02 4.85 16 10 N -0.51 -11.09 5.33 -231.41 -1.23 -12.32 16 11 C 0.05 1.03 5.83 -2.18 -0.01 1.02 16 12 C 0.09 1.34 4.08 -66.33 -0.27 1.07 16 13 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 14 N -0.84 -10.58 6.62 -3.50 -0.02 -10.60 16 15 C -0.05 -0.78 3.28 -90.39 -0.30 -1.07 16 16 H 0.08 1.12 7.93 -51.93 -0.41 0.70 16 17 C -0.07 -0.91 3.68 -104.62 -0.39 -1.30 16 18 C -0.06 -0.85 6.83 -39.58 -0.27 -1.12 16 19 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 20 C -0.13 -1.45 10.05 -39.59 -0.40 -1.85 16 21 C -0.13 -1.51 10.05 -39.58 -0.40 -1.90 16 22 C -0.12 -1.50 9.68 -39.58 -0.38 -1.88 16 23 C 0.04 0.78 5.91 -2.18 -0.01 0.76 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.00 -0.13 7.77 -51.93 -0.40 -0.53 16 26 H 0.03 0.83 8.08 -51.93 -0.42 0.42 16 27 H 0.05 1.00 7.67 -51.93 -0.40 0.60 16 28 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.34 3.81 9.08 -39.29 -0.36 3.45 16 30 H 0.34 3.93 7.84 -39.29 -0.31 3.62 16 31 H 0.13 2.05 7.42 -52.49 -0.39 1.66 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.11 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.11 1.23 7.97 -52.49 -0.42 0.81 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.04 0.80 6.83 -51.93 -0.35 0.44 16 LS Contribution 299.85 15.07 4.52 4.52 Total: -1.00 -29.94 299.85 -9.82 -39.75 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.54 Total: 4.84 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -3.25 Total: -16.72 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.52 Total: -49.19 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.94 -9.82 -39.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304196090.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.438 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds