Wall clock time and date at job start Mon Mar 30 2020 03:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99840 * 2 1 4 4 H 1.48503 * 109.47395 * 240.00198 * 3 2 1 5 5 H 1.48502 * 109.47129 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47179 * 120.00108 * 3 2 1 7 7 C 1.37875 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00046 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00047 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47148 * 180.02562 * 9 7 2 11 11 C 1.48567 * 111.00034 * 285.41588 * 10 9 7 12 12 C 1.54374 * 104.59834 * 200.95936 * 11 10 9 13 13 H 1.08996 * 110.32350 * 264.95870 * 12 11 10 14 14 N 1.46897 * 110.41025 * 142.78889 * 12 11 10 15 15 C 1.54266 * 105.05582 * 23.85477 * 12 11 10 16 16 H 1.09005 * 110.40618 * 241.05517 * 15 12 11 17 17 C 1.50698 * 110.32301 * 118.89765 * 15 12 11 18 18 C 1.38232 * 120.00233 * 302.62961 * 17 15 12 19 19 C 1.38237 * 120.00452 * 179.80636 * 18 17 15 20 20 C 1.38236 * 119.99601 * 0.40755 * 19 18 17 21 21 C 1.38228 * 120.00195 * 359.84692 * 20 19 18 22 22 C 1.38241 * 120.00263 * 359.96118 * 21 20 19 23 23 C 1.48566 * 111.00074 * 170.00195 * 10 9 7 24 24 H 0.97003 * 120.00551 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47374 * 59.99973 * 9 7 2 26 26 H 1.09001 * 109.47520 * 299.99934 * 9 7 2 27 27 H 1.09004 * 110.40948 * 319.74003 * 11 10 9 28 28 H 1.08997 * 110.40880 * 82.18055 * 11 10 9 29 29 H 1.00909 * 110.99779 * 64.31378 * 14 12 11 30 30 H 1.00899 * 110.99990 * 188.26819 * 14 12 11 31 31 H 1.08002 * 119.99701 * 0.02562 * 18 17 15 32 32 H 1.07997 * 119.99873 * 180.22769 * 19 18 17 33 33 H 1.07998 * 119.99611 * 179.83182 * 20 19 18 34 34 H 1.07999 * 120.00202 * 179.97438 * 21 20 19 35 35 H 1.07996 * 120.00268 * 179.97438 * 22 21 20 36 36 H 1.08996 * 110.40686 * 277.81685 * 23 10 9 37 37 H 1.08999 * 110.40972 * 40.13845 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 2.8319 -3.7807 -1.3376 12 6 3.3497 -5.2350 -1.3479 13 1 4.3992 -5.2652 -1.0552 14 7 3.1746 -5.8318 -2.6787 15 6 2.4824 -5.9765 -0.3098 16 1 3.1050 -6.3721 0.4927 17 6 1.7123 -7.0904 -0.9711 18 6 0.8625 -6.8122 -2.0253 19 6 0.1591 -7.8345 -2.6345 20 6 0.2993 -9.1339 -2.1841 21 6 1.1450 -9.4114 -1.1265 22 6 1.8514 -8.3896 -0.5198 23 6 1.5135 -4.9080 0.2403 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6248 -2.5571 0.8897 27 1 2.0919 -3.6351 -2.1246 28 1 3.6594 -3.0817 -1.4587 29 1 3.7378 -5.3540 -3.3662 30 1 3.3834 -6.8188 -2.6627 31 1 0.7507 -5.7966 -2.3752 32 1 -0.5020 -7.6175 -3.4605 33 1 -0.2523 -9.9321 -2.6583 34 1 1.2542 -10.4265 -0.7744 35 1 2.5119 -8.6064 0.3067 36 1 1.3484 -5.0576 1.3072 37 1 0.5662 -4.9379 -0.2981 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304196090.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:18 Heat of formation + Delta-G solvation = 14.381885 kcal Electronic energy + Delta-G solvation = -17747.465770 eV Core-core repulsion = 15102.409547 eV Total energy + Delta-G solvation = -2645.056223 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.03681 -38.96827 -35.78312 -34.29271 -32.86149 -31.60058 -30.31944 -28.42818 -27.67307 -24.55780 -23.33874 -22.90661 -21.87148 -20.47034 -18.54565 -17.69192 -17.15417 -16.74823 -16.25942 -16.08782 -15.60054 -15.36840 -15.24778 -14.68687 -14.18191 -14.01376 -13.77171 -13.60650 -13.41269 -12.93597 -12.66968 -12.50904 -12.41727 -12.22988 -12.07647 -11.88172 -11.66472 -11.55980 -11.27830 -10.62739 -9.79130 -9.48392 -9.36458 -9.20138 -8.22271 -6.33495 0.57166 0.69006 1.39798 1.43694 1.51719 2.39227 2.99724 3.09380 3.22357 3.64985 3.83127 3.89713 3.96761 4.20151 4.29436 4.38033 4.40461 4.45644 4.65228 4.74987 4.83104 4.84085 4.93595 4.99018 5.07382 5.14219 5.16463 5.26822 5.34571 5.60791 5.70978 5.78115 5.93829 5.95795 6.17085 6.24862 6.30549 6.47086 6.65031 6.81419 7.36486 8.89037 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.041963 B = 0.005014 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.095515 B = 5583.489785 C = 5745.093124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.525 4.525 8 H 0.062 0.938 9 C 0.201 3.799 10 N -0.515 5.515 11 C 0.055 3.945 12 C 0.104 3.896 13 H 0.058 0.942 14 N -0.834 5.834 15 C -0.041 4.041 16 H 0.098 0.902 17 C -0.077 4.077 18 C -0.075 4.075 19 C -0.141 4.141 20 C -0.124 4.124 21 C -0.131 4.131 22 C -0.122 4.122 23 C 0.040 3.960 24 H 0.265 0.735 25 H -0.037 1.037 26 H 0.000 1.000 27 H 0.026 0.974 28 H 0.064 0.936 29 H 0.345 0.655 30 H 0.349 0.651 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.073 0.927 37 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.304 -18.415 -4.452 19.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.563 4.563 8 H 0.080 0.920 9 C 0.074 3.926 10 N -0.239 5.239 11 C -0.074 4.074 12 C -0.008 4.008 13 H 0.076 0.924 14 N -0.367 5.367 15 C -0.060 4.060 16 H 0.116 0.884 17 C -0.078 4.078 18 C -0.094 4.094 19 C -0.159 4.159 20 C -0.142 4.142 21 C -0.149 4.149 22 C -0.140 4.140 23 C -0.088 4.088 24 H 0.074 0.926 25 H -0.020 1.020 26 H 0.018 0.982 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.159 0.841 30 H 0.164 0.836 31 H 0.116 0.884 32 H 0.142 0.858 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.152 0.848 36 H 0.092 0.908 37 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.793 -17.942 -3.955 18.988 hybrid contribution 0.228 1.022 -0.545 1.181 sum 5.022 -16.920 -4.500 18.215 Atomic orbital electron populations 1.70088 1.07842 1.28068 1.51592 1.25959 0.95764 1.03349 0.94607 0.85391 0.78136 0.77630 0.79184 1.19168 1.20687 1.19182 1.21386 0.93571 0.90994 1.50398 0.92011 1.19490 0.90199 0.89577 0.93320 1.65384 1.28976 1.02471 1.27096 1.22920 0.98260 0.96051 0.90168 1.21884 0.97140 0.92057 0.89733 0.92423 1.58908 1.64158 1.07890 1.05727 1.20945 0.95435 0.92766 0.96882 0.88387 1.19532 0.97615 0.93896 0.96744 1.20873 0.94749 0.98756 0.94977 1.21303 1.00334 0.93432 1.00858 1.21375 0.98983 0.96524 0.97346 1.21338 0.97146 0.99769 0.96619 1.21261 1.00535 0.91822 1.00374 1.23165 0.95519 0.89702 1.00439 0.92607 1.01954 0.98170 0.95585 0.91714 0.84134 0.83594 0.88435 0.85826 0.84326 0.83948 0.84823 0.90841 0.95802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.84 13.29 21.45 0.28 -57.56 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.53 -30.88 8.97 25.60 0.23 -30.65 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.52 16 9 C 0.20 11.30 4.59 85.56 0.39 11.69 16 10 N -0.52 -23.47 5.33 -886.06 -4.72 -28.19 16 11 C 0.05 2.18 5.83 86.45 0.50 2.68 16 12 C 0.10 3.05 4.08 45.81 0.19 3.23 16 13 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 14 N -0.83 -20.39 6.62 -164.98 -1.09 -21.48 16 15 C -0.04 -1.20 3.28 -10.65 -0.03 -1.23 16 16 H 0.10 2.52 7.93 -2.38 -0.02 2.50 16 17 C -0.08 -2.03 3.68 -19.87 -0.07 -2.10 16 18 C -0.07 -2.13 6.83 22.27 0.15 -1.98 16 19 C -0.14 -3.38 10.05 22.27 0.22 -3.16 16 20 C -0.12 -2.46 10.05 22.27 0.22 -2.24 16 21 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 22 C -0.12 -2.62 9.68 22.27 0.22 -2.40 16 23 C 0.04 1.54 5.91 86.45 0.51 2.05 16 24 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 25 H -0.04 -2.28 7.77 -2.39 -0.02 -2.30 16 26 H 0.00 0.01 8.08 -2.39 -0.02 -0.01 16 27 H 0.03 1.14 7.67 -2.38 -0.02 1.12 16 28 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.34 7.48 9.08 -89.69 -0.81 6.67 16 30 H 0.35 7.46 7.84 -89.69 -0.70 6.76 16 31 H 0.10 3.33 7.42 -2.91 -0.02 3.31 16 32 H 0.12 2.66 8.06 -2.91 -0.02 2.63 16 33 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.13 2.34 7.97 -2.91 -0.02 2.32 16 36 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.02 0.99 6.83 -2.39 -0.02 0.97 16 Total: -1.00 -66.72 299.85 -0.74 -67.46 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -0.45 Total: 18.46 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 3.22 Total: -25.81 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -5.53 Total: -107.23 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -66.72 -0.74 -67.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304196090.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.841 kcal (2) G-P(sol) polarization free energy of solvation -66.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds