Wall clock time and date at job start Mon Mar 30 2020 04:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46900 * 109.47110 * 2 1 4 4 C 1.47905 * 111.00149 * 289.96902 * 3 2 1 5 5 C 1.54600 * 102.62574 * 265.48904 * 4 3 2 6 6 C 1.51577 * 102.83487 * 334.46401 * 5 4 3 7 7 C 1.37923 * 131.56486 * 196.34667 * 6 5 4 8 8 C 1.38301 * 120.07976 * 179.28351 * 7 6 5 9 9 C 1.50702 * 120.05928 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.46705 * 20.01667 * 9 8 7 11 11 N 1.46891 * 109.47374 * 140.02173 * 9 8 7 12 12 C 1.50697 * 109.47070 * 260.02345 * 9 8 7 13 13 H 1.08011 * 120.00018 * 359.97438 * 12 9 8 14 14 C 1.37871 * 120.00159 * 179.97438 * 12 9 8 15 15 N 1.31516 * 120.00422 * 180.02562 * 14 12 9 16 16 Si 1.86798 * 120.00072 * 359.97438 * 14 12 9 17 17 H 1.48495 * 109.47387 * 90.00245 * 16 14 12 18 18 H 1.48504 * 109.47567 * 210.00232 * 16 14 12 19 19 H 1.48505 * 109.46901 * 330.00153 * 16 14 12 20 20 C 1.38305 * 119.88472 * 359.97438 * 8 7 6 21 21 C 1.37912 * 120.26500 * 0.12573 * 20 8 7 22 22 C 1.38962 * 107.95353 * 15.93575 * 6 5 4 23 23 H 1.08997 * 109.47323 * 59.99964 * 1 2 3 24 24 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47085 * 299.99902 * 1 2 3 26 26 H 1.08999 * 109.47085 * 240.00098 * 2 1 3 27 27 H 1.09006 * 109.47080 * 120.00030 * 2 1 3 28 28 H 1.09001 * 110.77769 * 23.76823 * 4 3 2 29 29 H 1.09000 * 110.78060 * 147.20367 * 4 3 2 30 30 H 1.09001 * 110.74305 * 216.13399 * 5 4 3 31 31 H 1.08993 * 110.74517 * 92.79968 * 5 4 3 32 32 H 1.07998 * 119.95810 * 359.28727 * 7 6 5 33 33 H 1.00907 * 110.99937 * 296.04670 * 11 9 8 34 34 H 1.00901 * 111.00278 * 60.00072 * 11 9 8 35 35 H 0.97002 * 120.00607 * 179.97438 * 15 14 12 36 36 H 1.07999 * 119.86813 * 180.14759 * 20 8 7 37 37 H 1.08002 * 119.90011 * 180.02562 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7518 2.0419 -1.2978 5 6 3.0738 1.8205 -2.0679 6 6 4.0913 1.6712 -0.9543 7 6 5.4686 1.7446 -0.9573 8 6 6.1739 1.5823 0.2212 9 6 7.6788 1.6620 0.2173 10 1 8.0124 2.1881 -0.6771 11 7 8.1338 2.3876 1.4106 12 6 8.2556 0.2698 0.2256 13 1 7.5981 -0.5871 0.2334 14 6 9.6225 0.0899 0.2233 15 7 10.1259 -1.1251 0.2300 16 14 10.7596 1.5718 0.2091 17 1 11.0648 1.9750 1.6053 18 1 12.0211 1.2213 -0.4917 19 1 10.0970 2.6974 -0.4976 20 6 5.4958 1.3467 1.4033 21 6 4.1188 1.2703 1.4114 22 6 3.4009 1.4290 0.2270 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.9199 1.5595 -1.8110 29 1 1.5580 3.1057 -1.1600 30 1 3.3072 2.6841 -2.6907 31 1 3.0232 0.9124 -2.6687 32 1 5.9968 1.9291 -1.8810 33 1 7.8133 3.3443 1.3962 34 1 7.8369 1.9195 2.2537 35 1 11.0876 -1.2517 0.2280 36 1 6.0467 1.2223 2.3238 37 1 3.5952 1.0865 2.3379 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309174135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:39 Heat of formation + Delta-G solvation = 37.071426 kcal Electronic energy + Delta-G solvation = -17682.213841 eV Core-core repulsion = 15038.141510 eV Total energy + Delta-G solvation = -2644.072331 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.55028 -37.40987 -34.30389 -32.73817 -31.74244 -30.65812 -28.43391 -28.02816 -26.06063 -23.52504 -22.58538 -21.93269 -20.28713 -19.32231 -16.88806 -16.65035 -15.92957 -15.23157 -14.92119 -14.64298 -14.25698 -13.81393 -13.66217 -13.41615 -12.76629 -12.68390 -12.45153 -12.26612 -11.94733 -11.84474 -11.67834 -11.48224 -11.17580 -11.08905 -10.68005 -10.44110 -10.22848 -9.81397 -9.33972 -8.94706 -8.53819 -8.33876 -7.72920 -7.38744 -6.01222 -4.11717 1.79144 1.87776 3.56963 3.61120 3.74170 3.76430 4.21185 4.64831 4.70673 4.89300 4.99095 5.03109 5.16289 5.25880 5.36790 5.40705 5.53302 5.59422 5.71655 5.75882 5.81203 5.86763 5.93511 6.00431 6.04352 6.11253 6.22637 6.43927 6.68478 6.82017 6.88885 7.07167 7.16197 7.29677 7.58332 7.66078 8.14571 8.31328 8.68095 8.98947 9.61708 11.08157 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.040559 B = 0.005416 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.178738 B = 5168.980909 C = 5249.184317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 N -0.490 5.490 4 C 0.049 3.951 5 C -0.108 4.108 6 C -0.140 4.140 7 C -0.090 4.090 8 C -0.071 4.071 9 C 0.217 3.783 10 H 0.049 0.951 11 N -0.840 5.840 12 C -0.516 4.516 13 H 0.071 0.929 14 C 0.081 3.919 15 N -0.900 5.900 16 Si 0.938 3.062 17 H -0.280 1.280 18 H -0.319 1.319 19 H -0.275 1.275 20 C -0.104 4.104 21 C -0.108 4.108 22 C 0.058 3.942 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.311 0.689 34 H 0.334 0.666 35 H 0.264 0.736 36 H 0.123 0.877 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.747 5.942 -1.617 17.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.075 4.075 3 N -0.208 5.208 4 C -0.078 4.078 5 C -0.147 4.147 6 C -0.142 4.142 7 C -0.109 4.109 8 C -0.074 4.074 9 C 0.108 3.892 10 H 0.067 0.933 11 N -0.370 5.370 12 C -0.554 4.554 13 H 0.089 0.911 14 C -0.123 4.123 15 N -0.537 5.537 16 Si 0.770 3.230 17 H -0.206 1.206 18 H -0.249 1.249 19 H -0.200 1.200 20 C -0.123 4.123 21 C -0.128 4.128 22 C -0.037 4.037 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.149 0.851 35 H 0.073 0.927 36 H 0.141 0.859 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.184 5.919 -1.464 17.294 hybrid contribution 0.017 0.251 -0.376 0.453 sum -16.167 6.169 -1.841 17.402 Atomic orbital electron populations 1.21828 0.94760 1.01537 1.02362 1.22178 0.95670 0.88088 1.01580 1.60294 1.12498 1.16365 1.31688 1.23146 0.96748 1.00285 0.87658 1.21629 0.93706 1.02412 0.96910 1.20862 0.94238 1.04482 0.94647 1.20321 0.91522 1.00689 0.98351 1.21156 0.99190 0.94867 0.92161 1.18688 0.84290 0.95824 0.90448 0.93295 1.59378 1.66674 1.04744 1.06176 1.20751 0.92245 0.89503 1.52937 0.91134 1.25029 0.98435 0.96268 0.92551 1.69959 1.12642 1.21546 1.49549 0.85848 0.77029 0.82066 0.78071 1.20608 1.24877 1.20000 1.20746 0.92799 1.00138 0.98643 1.20358 0.93501 1.03187 0.95720 1.19310 0.87663 1.02753 0.93958 0.92729 0.92181 0.91879 0.94280 0.90555 0.90053 0.89707 0.90050 0.90603 0.86555 0.87740 0.85137 0.92704 0.85909 0.86748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.95 37.16 0.37 -1.00 16 2 C 0.05 0.62 5.47 -3.82 -0.02 0.60 16 3 N -0.49 -6.78 5.04 -169.02 -0.85 -7.63 16 4 C 0.05 0.56 6.72 -2.43 -0.02 0.55 16 5 C -0.11 -1.40 6.92 -26.61 -0.18 -1.59 16 6 C -0.14 -2.34 6.23 -104.04 -0.65 -2.99 16 7 C -0.09 -1.69 9.66 -39.67 -0.38 -2.07 16 8 C -0.07 -1.44 4.89 -104.57 -0.51 -1.96 16 9 C 0.22 4.98 2.34 -70.02 -0.16 4.81 16 10 H 0.05 1.17 7.06 -51.93 -0.37 0.80 16 11 N -0.84 -17.47 6.59 -6.66 -0.04 -17.51 16 12 C -0.52 -14.39 9.28 -34.44 -0.32 -14.71 16 13 H 0.07 2.17 7.98 -52.48 -0.42 1.75 16 14 C 0.08 2.35 5.47 -17.82 -0.10 2.26 16 15 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 16 Si 0.94 23.84 26.03 -169.99 -4.43 19.41 16 17 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.32 -8.21 7.11 56.52 0.40 -7.80 16 19 H -0.27 -6.77 6.54 56.52 0.37 -6.40 16 20 C -0.10 -1.93 9.27 -39.68 -0.37 -2.30 16 21 C -0.11 -1.82 10.07 -39.27 -0.40 -2.22 16 22 C 0.06 0.96 5.54 -83.40 -0.46 0.50 16 23 H 0.05 0.46 6.60 -51.93 -0.34 0.12 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.49 8.03 -51.93 -0.42 0.08 16 27 H 0.08 0.97 8.06 -51.93 -0.42 0.56 16 28 H 0.08 0.76 6.27 -51.93 -0.33 0.44 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.12 2.10 8.04 -52.49 -0.42 1.68 16 33 H 0.31 5.59 9.06 -39.29 -0.36 5.24 16 34 H 0.33 6.63 7.34 -39.29 -0.29 6.34 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.12 2.17 6.66 -52.49 -0.35 1.82 16 37 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 296.36 15.07 4.47 4.47 Total: -1.00 -31.36 296.36 -8.69 -40.05 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.41 Total: 8.28 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -3.20 Total: -20.12 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.12 Total: -52.09 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: -4.43 Total: 19.41 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.36 -8.69 -40.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309174135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.119 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds