Wall clock time and date at job start Mon Mar 30 2020 04:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46900 * 109.47110 * 2 1 4 4 C 1.47905 * 111.00149 * 289.96902 * 3 2 1 5 5 C 1.54600 * 102.62574 * 265.48904 * 4 3 2 6 6 C 1.51577 * 102.83487 * 334.46401 * 5 4 3 7 7 C 1.37923 * 131.56486 * 196.34667 * 6 5 4 8 8 C 1.38301 * 120.07976 * 179.28351 * 7 6 5 9 9 C 1.50702 * 120.05928 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.46705 * 20.01667 * 9 8 7 11 11 N 1.46891 * 109.47374 * 140.02173 * 9 8 7 12 12 C 1.50697 * 109.47070 * 260.02345 * 9 8 7 13 13 H 1.08011 * 120.00018 * 359.97438 * 12 9 8 14 14 C 1.37871 * 120.00159 * 179.97438 * 12 9 8 15 15 N 1.31516 * 120.00422 * 180.02562 * 14 12 9 16 16 Si 1.86798 * 120.00072 * 359.97438 * 14 12 9 17 17 H 1.48495 * 109.47387 * 90.00245 * 16 14 12 18 18 H 1.48504 * 109.47567 * 210.00232 * 16 14 12 19 19 H 1.48505 * 109.46901 * 330.00153 * 16 14 12 20 20 C 1.38305 * 119.88472 * 359.97438 * 8 7 6 21 21 C 1.37912 * 120.26500 * 0.12573 * 20 8 7 22 22 C 1.38962 * 107.95353 * 15.93575 * 6 5 4 23 23 H 1.08997 * 109.47323 * 59.99964 * 1 2 3 24 24 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47085 * 299.99902 * 1 2 3 26 26 H 1.08999 * 109.47085 * 240.00098 * 2 1 3 27 27 H 1.09006 * 109.47080 * 120.00030 * 2 1 3 28 28 H 1.09001 * 110.77769 * 23.76823 * 4 3 2 29 29 H 1.09000 * 110.78060 * 147.20367 * 4 3 2 30 30 H 1.09001 * 110.74305 * 216.13399 * 5 4 3 31 31 H 1.08993 * 110.74517 * 92.79968 * 5 4 3 32 32 H 1.07998 * 119.95810 * 359.28727 * 7 6 5 33 33 H 1.00907 * 110.99937 * 296.04670 * 11 9 8 34 34 H 1.00901 * 111.00278 * 60.00072 * 11 9 8 35 35 H 0.97002 * 120.00607 * 179.97438 * 15 14 12 36 36 H 1.07999 * 119.86813 * 180.14759 * 20 8 7 37 37 H 1.08002 * 119.90011 * 180.02562 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7518 2.0419 -1.2978 5 6 3.0738 1.8205 -2.0679 6 6 4.0913 1.6712 -0.9543 7 6 5.4686 1.7446 -0.9573 8 6 6.1739 1.5823 0.2212 9 6 7.6788 1.6620 0.2173 10 1 8.0124 2.1881 -0.6771 11 7 8.1338 2.3876 1.4106 12 6 8.2556 0.2698 0.2256 13 1 7.5981 -0.5871 0.2334 14 6 9.6225 0.0899 0.2233 15 7 10.1259 -1.1251 0.2300 16 14 10.7596 1.5718 0.2091 17 1 11.0648 1.9750 1.6053 18 1 12.0211 1.2213 -0.4917 19 1 10.0970 2.6974 -0.4976 20 6 5.4958 1.3467 1.4033 21 6 4.1188 1.2703 1.4114 22 6 3.4009 1.4290 0.2270 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.9199 1.5595 -1.8110 29 1 1.5580 3.1057 -1.1600 30 1 3.3072 2.6841 -2.6907 31 1 3.0232 0.9124 -2.6687 32 1 5.9968 1.9291 -1.8810 33 1 7.8133 3.3443 1.3962 34 1 7.8369 1.9195 2.2537 35 1 11.0876 -1.2517 0.2280 36 1 6.0467 1.2223 2.3238 37 1 3.5952 1.0865 2.3379 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309174135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:38 Heat of formation + Delta-G solvation = 15.560393 kcal Electronic energy + Delta-G solvation = -17683.146629 eV Core-core repulsion = 15038.141510 eV Total energy + Delta-G solvation = -2645.005119 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.75463 -38.81975 -35.92548 -34.07078 -33.61773 -31.88072 -29.62848 -29.34782 -27.98686 -24.49583 -24.12745 -23.35211 -21.37310 -20.87857 -18.98626 -17.78713 -17.18727 -16.66390 -16.55349 -16.15177 -15.69452 -15.32473 -14.88202 -14.51902 -14.39138 -14.10224 -13.95997 -13.42186 -13.35939 -13.16839 -12.92205 -12.69832 -12.65483 -12.20036 -12.06822 -11.94177 -11.77452 -11.62416 -11.42032 -10.76287 -10.24499 -9.70951 -9.41026 -8.70961 -8.25392 -6.38901 0.41093 0.48197 1.50791 1.57729 1.71391 2.52305 2.64336 2.85271 3.09688 3.61875 3.85097 4.03229 4.07277 4.14180 4.18852 4.22288 4.30637 4.50350 4.54085 4.56138 4.66684 4.70429 4.83454 4.95088 4.99457 5.01518 5.10282 5.25329 5.31618 5.43009 5.49006 5.52255 5.77849 5.84468 6.01549 6.12523 6.34327 6.46847 6.74975 6.97996 7.37942 8.87855 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.040559 B = 0.005416 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.178738 B = 5168.980909 C = 5249.184317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.048 3.952 3 N -0.495 5.495 4 C 0.051 3.949 5 C -0.106 4.106 6 C -0.148 4.148 7 C -0.104 4.104 8 C -0.099 4.099 9 C 0.227 3.773 10 H 0.041 0.959 11 N -0.842 5.842 12 C -0.513 4.513 13 H 0.026 0.974 14 C 0.027 3.973 15 N -0.949 5.949 16 Si 1.002 2.998 17 H -0.275 1.275 18 H -0.324 1.324 19 H -0.261 1.261 20 C -0.111 4.111 21 C -0.113 4.113 22 C 0.062 3.938 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.034 0.966 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.333 0.667 34 H 0.340 0.660 35 H 0.265 0.735 36 H 0.124 0.876 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.944 7.633 -1.950 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.077 4.077 3 N -0.213 5.213 4 C -0.075 4.075 5 C -0.144 4.144 6 C -0.151 4.151 7 C -0.124 4.124 8 C -0.102 4.102 9 C 0.117 3.883 10 H 0.059 0.941 11 N -0.373 5.373 12 C -0.551 4.551 13 H 0.044 0.956 14 C -0.172 4.172 15 N -0.589 5.589 16 Si 0.832 3.168 17 H -0.201 1.201 18 H -0.254 1.254 19 H -0.185 1.185 20 C -0.130 4.130 21 C -0.133 4.133 22 C -0.034 4.034 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.083 0.917 28 H 0.127 0.873 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.134 0.866 33 H 0.146 0.854 34 H 0.155 0.845 35 H 0.074 0.926 36 H 0.142 0.858 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.419 7.629 -1.796 20.017 hybrid contribution 0.532 -0.327 -0.273 0.681 sum -17.887 7.302 -2.069 19.431 Atomic orbital electron populations 1.21776 0.92189 1.02715 1.02954 1.22258 0.97711 0.86936 1.00839 1.60352 1.10460 1.17373 1.33156 1.23309 0.96800 1.01052 0.86374 1.21734 0.93046 1.03484 0.96147 1.21268 0.93924 1.03347 0.96551 1.20413 0.92785 1.01319 0.97834 1.20922 0.97743 0.97878 0.93642 1.18305 0.86155 0.92958 0.90860 0.94091 1.59078 1.66786 1.05887 1.05565 1.20964 0.91689 0.90904 1.51570 0.95597 1.25871 1.00130 0.98692 0.92516 1.70089 1.13015 1.23786 1.51971 0.84814 0.74782 0.78983 0.78213 1.20091 1.25381 1.18543 1.20791 0.93700 1.00361 0.98136 1.20549 0.92976 1.02793 0.96975 1.19609 0.89225 1.00946 0.93619 0.91409 0.90778 0.91948 0.94762 0.91697 0.87305 0.88708 0.88366 0.89972 0.86607 0.85397 0.84500 0.92641 0.85776 0.84876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.95 71.98 0.72 -1.40 16 2 C 0.05 1.06 5.47 86.30 0.47 1.53 16 3 N -0.50 -12.38 5.04 -688.65 -3.47 -15.85 16 4 C 0.05 0.99 6.72 86.65 0.58 1.58 16 5 C -0.11 -2.46 6.92 30.67 0.21 -2.24 16 6 C -0.15 -4.77 6.23 -19.49 -0.12 -4.89 16 7 C -0.10 -3.92 9.66 22.21 0.21 -3.71 16 8 C -0.10 -4.06 4.89 -19.83 -0.10 -4.16 16 9 C 0.23 10.50 2.34 43.42 0.10 10.60 16 10 H 0.04 1.96 7.06 -2.39 -0.02 1.94 16 11 N -0.84 -34.20 6.59 -174.97 -1.15 -35.35 16 12 C -0.51 -29.48 9.28 25.60 0.24 -29.25 16 13 H 0.03 1.68 7.98 -2.90 -0.02 1.65 16 14 C 0.03 1.58 5.47 84.65 0.46 2.04 16 15 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 16 Si 1.00 49.52 26.03 68.60 1.79 51.30 16 17 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 18 H -0.32 -16.11 7.11 99.48 0.71 -15.40 16 19 H -0.26 -12.17 6.54 99.48 0.65 -11.52 16 20 C -0.11 -4.11 9.27 22.21 0.21 -3.90 16 21 C -0.11 -3.72 10.07 22.47 0.23 -3.49 16 22 C 0.06 1.93 5.54 38.28 0.21 2.14 16 23 H 0.07 0.87 6.60 -2.39 -0.02 0.85 16 24 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.03 0.79 8.03 -2.39 -0.02 0.77 16 27 H 0.06 1.56 8.06 -2.38 -0.02 1.54 16 28 H 0.11 1.55 6.27 -2.39 -0.01 1.54 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.12 4.22 8.04 -2.91 -0.02 4.19 16 33 H 0.33 11.39 9.06 -89.69 -0.81 10.57 16 34 H 0.34 13.29 7.34 -89.69 -0.66 12.63 16 35 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 36 H 0.12 4.42 6.66 -2.91 -0.02 4.40 16 37 H 0.13 3.78 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -68.79 296.36 0.44 -68.36 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: -0.45 Total: 26.72 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: 3.42 Total: -35.15 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -4.33 Total: -111.23 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 1.79 Total: 51.30 kcal Total: -68.79 0.44 -68.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309174135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.919 kcal (2) G-P(sol) polarization free energy of solvation -68.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds