Wall clock time and date at job start Mon Mar 30 2020 03:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38125 * 120.07206 * 2 1 4 4 C 1.38154 * 120.01382 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.80693 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.46984 * 144.98429 * 5 4 3 7 7 N 1.46892 * 109.47450 * 24.97885 * 5 4 3 8 8 C 1.50702 * 109.47020 * 264.97841 * 5 4 3 9 9 H 1.08000 * 120.00034 * 0.02562 * 8 5 4 10 10 C 1.37884 * 119.99955 * 180.02562 * 8 5 4 11 11 N 1.31513 * 119.99694 * 359.97438 * 10 8 5 12 12 Si 1.86796 * 119.99977 * 180.02562 * 10 8 5 13 13 H 1.48504 * 109.47386 * 89.99582 * 12 10 8 14 14 H 1.48499 * 109.47128 * 209.99661 * 12 10 8 15 15 H 1.48505 * 109.47023 * 329.99738 * 12 10 8 16 16 C 1.38565 * 120.37685 * 0.02562 * 4 3 2 17 17 C 1.38083 * 119.89146 * 0.02562 * 16 4 3 18 18 C 1.38782 * 120.07518 * 180.02562 * 2 1 3 19 19 N 1.39675 * 119.97128 * 359.97438 * 18 2 1 20 20 C 1.51366 * 109.79660 * 180.02562 * 17 16 4 21 21 C 1.54350 * 105.15781 * 342.82264 * 20 17 16 22 22 C 1.51385 * 130.34517 * 180.02562 * 16 4 3 23 23 H 1.09002 * 109.46619 * 90.00519 * 1 2 3 24 24 H 1.09006 * 109.46691 * 210.00018 * 1 2 3 25 25 H 1.08998 * 109.47176 * 330.00238 * 1 2 3 26 26 H 1.08001 * 119.99467 * 359.97438 * 3 2 1 27 27 H 1.00907 * 110.99810 * 176.04042 * 7 5 4 28 28 H 1.00896 * 111.00182 * 299.99692 * 7 5 4 29 29 H 0.96998 * 119.99427 * 180.02562 * 11 10 8 30 30 H 0.97000 * 120.00196 * 179.97438 * 19 18 2 31 31 H 0.96999 * 119.99927 * 359.97438 * 19 18 2 32 32 H 1.08992 * 110.30953 * 101.74086 * 20 17 16 33 33 H 1.08995 * 110.30236 * 223.90746 * 20 17 16 34 34 H 1.08994 * 110.83140 * 144.54582 * 21 20 17 35 35 H 1.09006 * 110.82587 * 268.10374 * 21 20 17 36 36 H 1.08993 * 110.30283 * 316.07314 * 22 16 4 37 37 H 1.09004 * 110.29886 * 78.22738 * 22 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1953 0.0000 4 6 3.5807 1.1939 -0.0005 5 6 4.3311 2.5007 0.0001 6 1 5.2422 2.3963 0.5893 7 7 3.4866 3.5502 0.5859 8 6 4.6885 2.8754 -1.4152 9 1 4.4007 2.2317 -2.2333 10 6 5.3831 4.0399 -1.6657 11 7 5.7331 4.8239 -0.6695 12 14 5.8255 4.5046 -3.4200 13 1 4.7335 5.3229 -4.0058 14 1 7.0867 5.2885 -3.4213 15 1 6.0080 3.2718 -4.2276 16 6 4.2802 -0.0022 -0.0016 17 6 3.5942 -1.2006 -0.0027 18 6 2.2025 -1.2010 -0.0005 19 7 1.5051 -2.4112 -0.0005 20 6 4.5755 -2.3531 -0.0031 21 6 5.9210 -1.7373 -0.4421 22 6 5.7709 -0.2658 -0.0018 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8901 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.6603 2.1313 -0.0004 27 1 3.9900 4.4218 0.6569 28 1 2.6352 3.6663 0.0571 29 1 6.2214 5.6433 -0.8457 30 1 1.9908 -3.2508 -0.0013 31 1 0.5351 -2.4119 0.0002 32 1 4.6620 -2.7766 0.9974 33 1 4.2602 -3.1180 -0.7126 34 1 6.7529 -2.2142 0.0760 35 1 6.0449 -1.8072 -1.5229 36 1 6.2715 0.3940 -0.7104 37 1 6.1796 -0.1271 0.9991 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309412054.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:33 Heat of formation + Delta-G solvation = 6.494897 kcal Electronic energy + Delta-G solvation = -18059.012670 eV Core-core repulsion = 15413.614441 eV Total energy + Delta-G solvation = -2645.398229 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.70770 -35.92587 -35.38716 -33.05421 -31.16567 -30.16651 -28.49092 -26.72395 -25.97326 -24.95324 -22.50688 -20.72074 -19.79357 -18.78049 -16.80180 -16.40270 -15.91689 -15.05717 -14.88373 -14.26343 -13.92116 -13.38879 -13.30572 -12.76261 -12.45676 -12.37949 -12.31019 -11.81483 -11.61934 -11.32342 -11.18439 -11.01521 -10.90826 -10.65408 -10.58414 -10.46484 -10.18876 -10.05052 -9.34417 -9.33168 -8.55701 -7.62701 -7.15262 -6.64234 -5.97824 -4.16344 2.14974 2.47393 3.25638 3.33086 3.37633 4.33246 4.36401 4.61889 5.00022 5.16009 5.21216 5.41618 5.52306 5.57800 5.83469 5.90246 5.96219 6.01152 6.11809 6.19566 6.23020 6.29058 6.47501 6.54923 6.66938 6.76422 6.84059 6.89979 7.06361 7.38265 7.42275 7.67697 7.82712 7.94529 8.09616 8.17869 8.24159 8.78735 9.04555 9.21437 9.54999 10.96405 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022436 B = 0.007818 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.673276 B = 3580.667666 C = 4212.653104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.174 4.174 3 C -0.065 4.065 4 C -0.065 4.065 5 C 0.247 3.753 6 H 0.044 0.956 7 N -0.852 5.852 8 C -0.534 4.534 9 H 0.054 0.946 10 C 0.064 3.936 11 N -0.896 5.896 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C -0.051 4.051 17 C -0.183 4.183 18 C 0.203 3.797 19 N -0.888 5.888 20 C -0.063 4.063 21 C -0.119 4.119 22 C -0.080 4.080 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.120 0.880 27 H 0.353 0.647 28 H 0.309 0.691 29 H 0.264 0.736 30 H 0.389 0.611 31 H 0.389 0.611 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.349 -12.008 1.256 13.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.179 4.179 3 C -0.084 4.084 4 C -0.067 4.067 5 C 0.137 3.863 6 H 0.062 0.938 7 N -0.381 5.381 8 C -0.574 4.574 9 H 0.072 0.928 10 C -0.137 4.137 11 N -0.535 5.535 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.052 4.052 17 C -0.187 4.187 18 C 0.101 3.899 19 N -0.430 5.430 20 C -0.100 4.100 21 C -0.156 4.156 22 C -0.117 4.117 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.138 0.862 27 H 0.169 0.831 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.216 0.784 31 H 0.218 0.782 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.220 -12.237 1.962 13.448 hybrid contribution 0.229 0.539 -1.985 2.070 sum -4.991 -11.698 -0.024 12.718 Atomic orbital electron populations 1.20473 0.92302 1.01429 1.00994 1.19161 0.94884 0.91931 1.11913 1.20510 0.93691 0.96093 0.98127 1.19783 0.93023 0.95269 0.98614 1.17840 0.90793 0.84705 0.92994 0.93794 1.59568 1.09027 1.13655 1.55883 1.21858 1.35778 1.06208 0.93595 0.92789 1.25017 0.95137 0.96463 0.97107 1.69750 1.39920 1.13342 1.30517 0.86587 0.77848 0.78501 0.85032 1.20739 1.21183 1.19903 1.20044 0.94894 0.92055 0.98184 1.19846 0.91216 0.95991 1.11659 1.16950 0.89331 0.85757 0.97812 1.42345 1.08181 1.05046 1.87436 1.20738 0.93516 0.95554 1.00196 1.22262 0.96392 0.96063 1.00918 1.20966 0.93221 0.95686 1.01821 0.92515 0.93127 0.91899 0.86185 0.83103 0.88089 0.92632 0.78406 0.78202 0.91793 0.92476 0.91466 0.91475 0.89772 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 9.57 36.01 0.34 -0.97 16 2 C -0.17 -3.12 5.89 -104.46 -0.62 -3.74 16 3 C -0.07 -1.35 8.91 -39.65 -0.35 -1.70 16 4 C -0.06 -1.47 5.00 -104.53 -0.52 -1.99 16 5 C 0.25 6.27 2.76 -70.02 -0.19 6.08 16 6 H 0.04 1.23 7.83 -51.93 -0.41 0.83 16 7 N -0.85 -20.78 8.78 -6.65 -0.06 -20.84 16 8 C -0.53 -14.55 8.71 -34.44 -0.30 -14.85 16 9 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 10 C 0.06 1.75 5.38 -17.82 -0.10 1.66 16 11 N -0.90 -24.93 11.54 55.43 0.64 -24.29 16 12 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 16 C -0.05 -1.05 6.00 -104.22 -0.63 -1.68 16 17 C -0.18 -3.30 6.10 -104.01 -0.63 -3.94 16 18 C 0.20 3.47 6.74 -83.74 -0.56 2.91 16 19 N -0.89 -11.35 8.99 32.44 0.29 -11.05 16 20 C -0.06 -0.91 6.27 -26.85 -0.17 -1.08 16 21 C -0.12 -1.75 7.08 -25.33 -0.18 -1.93 16 22 C -0.08 -1.48 6.20 -26.85 -0.17 -1.64 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.59 6.54 -51.93 -0.34 0.25 16 25 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 26 H 0.12 2.42 6.26 -52.49 -0.33 2.09 16 27 H 0.35 9.18 7.08 -39.29 -0.28 8.90 16 28 H 0.31 7.18 7.18 -39.29 -0.28 6.89 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.39 4.26 8.36 -40.82 -0.34 3.92 16 31 H 0.39 4.22 6.81 -40.82 -0.28 3.95 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 295.95 15.07 4.46 4.46 Total: -1.00 -29.00 295.95 -8.94 -37.93 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -5.17 Total: 20.45 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -4.07 Total: -22.88 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.87 Total: -56.18 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.00 -8.94 -37.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309412054.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.428 kcal (2) G-P(sol) polarization free energy of solvation -28.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds