Wall clock time and date at job start Mon Mar 30 2020 03:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38373 * 119.92303 * 2 1 4 4 C 1.38286 * 119.92601 * 180.02562 * 3 2 1 5 5 C 1.38573 * 119.96635 * 0.02562 * 4 3 2 6 6 C 1.37961 * 120.31519 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.06904 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47301 * 220.01869 * 7 6 5 9 9 N 1.46899 * 109.47182 * 340.02210 * 7 6 5 10 10 C 1.50698 * 109.46903 * 100.01974 * 7 6 5 11 11 H 1.07999 * 120.00324 * 0.02562 * 10 7 6 12 12 C 1.37879 * 120.00185 * 180.02562 * 10 7 6 13 13 N 1.31521 * 119.99758 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 120.00445 * 180.02562 * 12 10 7 15 15 H 1.48505 * 109.46602 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47513 * 119.99899 * 14 12 10 17 17 H 1.48504 * 109.46936 * 240.00258 * 14 12 10 18 18 C 1.38774 * 119.91759 * 180.02562 * 2 1 3 19 19 N 1.39679 * 120.11718 * 359.97438 * 18 2 1 20 20 C 1.51396 * 109.72883 * 180.02562 * 4 3 2 21 21 C 1.54339 * 105.18004 * 342.80211 * 20 4 3 22 22 C 1.51684 * 130.23756 * 359.82941 * 3 2 1 23 23 H 1.09001 * 109.46641 * 90.00199 * 1 2 3 24 24 H 1.09000 * 109.47199 * 209.99839 * 1 2 3 25 25 H 1.08994 * 109.46776 * 329.99796 * 1 2 3 26 26 H 1.07993 * 119.84274 * 179.97438 * 5 4 3 27 27 H 1.00897 * 110.99951 * 59.99330 * 9 7 6 28 28 H 1.00898 * 111.00333 * 183.95380 * 9 7 6 29 29 H 0.96992 * 119.99957 * 179.97438 * 13 12 10 30 30 H 0.96994 * 119.99893 * 359.97438 * 19 18 2 31 31 H 0.96999 * 120.00116 * 179.97438 * 19 18 2 32 32 H 1.09001 * 110.30089 * 223.88036 * 20 4 3 33 33 H 1.09002 * 110.30439 * 101.72947 * 20 4 3 34 34 H 1.09002 * 110.82153 * 144.60482 * 21 20 4 35 35 H 1.09002 * 110.82354 * 267.95237 * 21 20 4 36 36 H 1.09003 * 110.25520 * 78.28461 * 22 3 2 37 37 H 1.09001 * 110.49579 * 316.03566 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5802 1.1993 -0.0005 5 6 4.2724 -0.0011 -0.0016 6 6 3.5885 -1.1993 -0.0016 7 6 4.3469 -2.5015 -0.0034 8 1 3.8489 -3.2112 -0.6641 9 7 5.7176 -2.2693 -0.4780 10 6 4.3877 -3.0609 1.3954 11 1 3.9117 -2.5271 2.2046 12 6 5.0328 -4.2543 1.6421 13 7 5.6129 -4.9042 0.6568 14 14 5.0827 -4.9481 3.3757 15 1 4.3617 -4.0325 4.2962 16 1 4.4318 -6.2826 3.3939 17 1 6.4950 -5.0802 3.8155 18 6 2.1992 -1.2028 -0.0005 19 7 1.5016 -2.4129 -0.0005 20 6 4.0912 2.6245 0.0002 21 6 2.8880 3.4854 -0.4392 22 6 1.6825 2.6261 -0.0034 23 1 -0.3632 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 5.3523 0.0013 -0.0024 27 1 6.2007 -1.6143 0.1184 28 1 6.2274 -3.1371 -0.5497 29 1 6.0670 -5.7435 0.8304 30 1 0.5316 -2.4135 0.0002 31 1 1.9870 -3.2526 -0.0013 32 1 4.9122 2.7322 -0.7086 33 1 4.4149 2.9097 1.0012 34 1 2.8880 4.4445 0.0790 35 1 2.8893 3.6307 -1.5195 36 1 1.3566 2.9121 0.9966 37 1 0.8636 2.7346 -0.7145 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309571260.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:12 Heat of formation + Delta-G solvation = 6.579898 kcal Electronic energy + Delta-G solvation = -18004.878918 eV Core-core repulsion = 15359.484376 eV Total energy + Delta-G solvation = -2645.394543 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.67060 -36.57679 -34.60983 -32.56169 -31.74434 -30.57095 -27.78180 -27.03359 -25.76892 -25.27507 -22.67738 -20.68891 -19.53305 -18.87479 -16.65355 -16.47883 -15.97472 -15.15649 -14.76036 -14.30119 -13.79835 -13.37417 -13.09787 -12.89904 -12.70260 -12.45592 -12.25587 -11.75905 -11.64218 -11.48804 -11.30724 -11.09025 -10.94436 -10.81185 -10.70962 -10.59023 -10.03282 -9.92267 -9.46737 -9.31628 -8.66756 -7.60398 -7.19215 -6.50850 -6.04863 -4.25182 2.26041 2.42164 3.19629 3.29033 3.34608 4.30702 4.64548 4.65584 5.01427 5.03496 5.13055 5.25435 5.55694 5.62848 5.70031 5.78480 5.93493 5.98189 6.05673 6.11485 6.17588 6.21342 6.28290 6.42655 6.46375 6.68551 6.86016 6.92777 7.10750 7.27628 7.49640 7.74213 7.75566 7.77689 8.13793 8.36453 8.62138 8.70827 8.97934 9.15021 9.47486 10.87921 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027663 B = 0.006877 C = 0.006246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.936613 B = 4070.432107 C = 4481.488434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.169 4.169 3 C -0.078 4.078 4 C -0.163 4.163 5 C -0.058 4.058 6 C -0.101 4.101 7 C 0.251 3.749 8 H 0.041 0.959 9 N -0.850 5.850 10 C -0.537 4.537 11 H 0.055 0.945 12 C 0.065 3.935 13 N -0.894 5.894 14 Si 0.894 3.106 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.221 3.779 19 N -0.873 5.873 20 C -0.069 4.069 21 C -0.119 4.119 22 C -0.073 4.073 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.117 0.883 27 H 0.312 0.688 28 H 0.354 0.646 29 H 0.264 0.736 30 H 0.384 0.616 31 H 0.407 0.593 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.874 10.706 -1.444 12.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.174 4.174 3 C -0.079 4.079 4 C -0.165 4.165 5 C -0.078 4.078 6 C -0.106 4.106 7 C 0.141 3.859 8 H 0.059 0.941 9 N -0.380 5.380 10 C -0.577 4.577 11 H 0.074 0.926 12 C -0.137 4.137 13 N -0.534 5.534 14 Si 0.722 3.278 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C 0.116 3.884 19 N -0.413 5.413 20 C -0.106 4.106 21 C -0.157 4.157 22 C -0.110 4.110 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.135 0.865 27 H 0.122 0.878 28 H 0.169 0.831 29 H 0.074 0.926 30 H 0.212 0.788 31 H 0.239 0.761 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.095 10.823 -2.163 13.121 hybrid contribution 0.182 -1.344 2.018 2.432 sum -6.913 9.479 -0.145 11.733 Atomic orbital electron populations 1.20450 0.92662 1.01313 1.00785 1.18598 0.94544 0.90940 1.13340 1.19883 0.93920 0.92938 1.01154 1.20155 0.93907 0.94099 1.08370 1.20163 0.99424 0.89952 0.98214 1.19837 0.91153 0.96878 1.02691 1.17717 0.87072 0.87539 0.93612 0.94088 1.59514 1.05474 1.18002 1.55005 1.21912 1.34950 1.05926 0.94905 0.92639 1.25034 0.95147 0.96426 0.97139 1.69758 1.36132 1.16562 1.30942 0.86507 0.77778 0.78824 0.84716 1.19825 1.20972 1.21002 1.17254 0.90876 0.85554 0.94737 1.42557 1.07853 1.06069 1.84849 1.20826 0.97412 0.91653 1.00744 1.22246 0.94956 0.97644 1.00827 1.20950 0.97638 0.91625 1.00807 0.92678 0.92815 0.92504 0.86526 0.87841 0.83054 0.92594 0.78785 0.76149 0.91774 0.91598 0.91530 0.91530 0.91295 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 9.43 36.01 0.34 -1.01 16 2 C -0.17 -3.07 5.90 -104.37 -0.62 -3.68 16 3 C -0.08 -1.37 6.01 -104.07 -0.63 -2.00 16 4 C -0.16 -3.01 6.14 -104.14 -0.64 -3.65 16 5 C -0.06 -1.22 9.25 -39.56 -0.37 -1.59 16 6 C -0.10 -2.27 5.04 -104.47 -0.53 -2.79 16 7 C 0.25 6.20 2.32 -70.02 -0.16 6.04 16 8 H 0.04 1.10 7.10 -51.93 -0.37 0.73 16 9 N -0.85 -20.43 8.66 -6.65 -0.06 -20.49 16 10 C -0.54 -14.21 8.48 -34.44 -0.29 -14.50 16 11 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.71 5.38 -17.82 -0.10 1.62 16 13 N -0.89 -24.25 11.54 55.43 0.64 -23.61 16 14 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 15 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 18 C 0.22 4.50 6.70 -83.83 -0.56 3.94 16 19 N -0.87 -15.93 8.90 32.39 0.29 -15.64 16 20 C -0.07 -1.01 6.77 -26.84 -0.18 -1.19 16 21 C -0.12 -1.46 7.07 -25.34 -0.18 -1.64 16 22 C -0.07 -0.99 6.13 -26.71 -0.16 -1.16 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.71 6.54 -51.93 -0.34 0.37 16 25 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 26 H 0.12 2.39 6.23 -52.49 -0.33 2.07 16 27 H 0.31 7.19 7.28 -39.29 -0.29 6.91 16 28 H 0.35 9.04 7.08 -39.29 -0.28 8.77 16 29 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.38 5.77 6.82 -40.82 -0.28 5.49 16 31 H 0.41 8.06 6.88 -40.82 -0.28 7.78 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 293.19 15.07 4.42 4.42 Total: -1.00 -27.93 293.19 -8.86 -36.79 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: -5.06 Total: 24.28 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -4.07 Total: -21.62 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.87 Total: -59.74 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.93 -8.86 -36.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309571260.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.366 kcal (2) G-P(sol) polarization free energy of solvation -27.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds