Wall clock time and date at job start Mon Mar 30 2020 03:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38373 * 119.92303 * 2 1 4 4 C 1.38286 * 119.92601 * 180.02562 * 3 2 1 5 5 C 1.38573 * 119.96635 * 0.02562 * 4 3 2 6 6 C 1.37961 * 120.31519 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.06904 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47301 * 220.01869 * 7 6 5 9 9 N 1.46899 * 109.47182 * 340.02210 * 7 6 5 10 10 C 1.50698 * 109.46903 * 100.01974 * 7 6 5 11 11 H 1.07999 * 120.00324 * 0.02562 * 10 7 6 12 12 C 1.37879 * 120.00185 * 180.02562 * 10 7 6 13 13 N 1.31521 * 119.99758 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 120.00445 * 180.02562 * 12 10 7 15 15 H 1.48505 * 109.46602 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47513 * 119.99899 * 14 12 10 17 17 H 1.48504 * 109.46936 * 240.00258 * 14 12 10 18 18 C 1.38774 * 119.91759 * 180.02562 * 2 1 3 19 19 N 1.39679 * 120.11718 * 359.97438 * 18 2 1 20 20 C 1.51396 * 109.72883 * 180.02562 * 4 3 2 21 21 C 1.54339 * 105.18004 * 342.80211 * 20 4 3 22 22 C 1.51684 * 130.23756 * 359.82941 * 3 2 1 23 23 H 1.09001 * 109.46641 * 90.00199 * 1 2 3 24 24 H 1.09000 * 109.47199 * 209.99839 * 1 2 3 25 25 H 1.08994 * 109.46776 * 329.99796 * 1 2 3 26 26 H 1.07993 * 119.84274 * 179.97438 * 5 4 3 27 27 H 1.00897 * 110.99951 * 59.99330 * 9 7 6 28 28 H 1.00898 * 111.00333 * 183.95380 * 9 7 6 29 29 H 0.96992 * 119.99957 * 179.97438 * 13 12 10 30 30 H 0.96994 * 119.99893 * 359.97438 * 19 18 2 31 31 H 0.96999 * 120.00116 * 179.97438 * 19 18 2 32 32 H 1.09001 * 110.30089 * 223.88036 * 20 4 3 33 33 H 1.09002 * 110.30439 * 101.72947 * 20 4 3 34 34 H 1.09002 * 110.82153 * 144.60482 * 21 20 4 35 35 H 1.09002 * 110.82354 * 267.95237 * 21 20 4 36 36 H 1.09003 * 110.25520 * 78.28461 * 22 3 2 37 37 H 1.09001 * 110.49579 * 316.03566 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5802 1.1993 -0.0005 5 6 4.2724 -0.0011 -0.0016 6 6 3.5885 -1.1993 -0.0016 7 6 4.3469 -2.5015 -0.0034 8 1 3.8489 -3.2112 -0.6641 9 7 5.7176 -2.2693 -0.4780 10 6 4.3877 -3.0609 1.3954 11 1 3.9117 -2.5271 2.2046 12 6 5.0328 -4.2543 1.6421 13 7 5.6129 -4.9042 0.6568 14 14 5.0827 -4.9481 3.3757 15 1 4.3617 -4.0325 4.2962 16 1 4.4318 -6.2826 3.3939 17 1 6.4950 -5.0802 3.8155 18 6 2.1992 -1.2028 -0.0005 19 7 1.5016 -2.4129 -0.0005 20 6 4.0912 2.6245 0.0002 21 6 2.8880 3.4854 -0.4392 22 6 1.6825 2.6261 -0.0034 23 1 -0.3632 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 5.3523 0.0013 -0.0024 27 1 6.2007 -1.6143 0.1184 28 1 6.2274 -3.1371 -0.5497 29 1 6.0670 -5.7435 0.8304 30 1 0.5316 -2.4135 0.0002 31 1 1.9870 -3.2526 -0.0013 32 1 4.9122 2.7322 -0.7086 33 1 4.4149 2.9097 1.0012 34 1 2.8880 4.4445 0.0790 35 1 2.8893 3.6307 -1.5195 36 1 1.3566 2.9121 0.9966 37 1 0.8636 2.7346 -0.7145 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309571260.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:12 Heat of formation + Delta-G solvation = -10.883054 kcal Electronic energy + Delta-G solvation = -18005.636169 eV Core-core repulsion = 15359.484376 eV Total energy + Delta-G solvation = -2646.151793 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.06774 -37.99662 -36.33228 -34.22354 -33.17480 -32.28195 -29.18007 -28.35827 -27.64420 -26.61922 -24.38435 -21.95937 -20.82070 -20.48001 -18.54519 -18.12309 -17.49439 -16.61870 -16.23953 -15.81451 -15.37990 -14.89183 -14.66632 -14.44633 -14.28771 -13.62767 -13.56366 -13.25727 -13.07850 -13.02637 -12.89565 -12.68169 -12.47890 -12.37609 -11.96540 -11.87337 -11.83208 -11.45547 -11.17518 -10.72913 -10.65167 -9.24017 -9.04527 -8.19400 -7.87560 -6.36027 0.77013 0.94375 1.32433 1.36683 1.47194 2.35262 3.04224 3.13886 3.25417 3.83456 3.88995 4.19919 4.31325 4.38580 4.47499 4.58121 4.66843 4.83126 4.87505 4.96293 4.98066 5.00590 5.07753 5.16149 5.19133 5.32091 5.38993 5.47555 5.58535 5.64587 5.81523 5.97681 6.05112 6.12577 6.32334 6.66601 6.84263 6.96788 7.11346 7.21999 7.40526 8.82537 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027663 B = 0.006877 C = 0.006246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.936613 B = 4070.432107 C = 4481.488434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.174 4.174 3 C -0.081 4.081 4 C -0.176 4.176 5 C -0.078 4.078 6 C -0.139 4.139 7 C 0.260 3.740 8 H 0.011 0.989 9 N -0.844 5.844 10 C -0.543 4.543 11 H 0.037 0.963 12 C 0.025 3.975 13 N -0.915 5.915 14 Si 0.954 3.046 15 H -0.278 1.278 16 H -0.277 1.277 17 H -0.280 1.280 18 C 0.201 3.799 19 N -0.869 5.869 20 C -0.071 4.071 21 C -0.111 4.111 22 C -0.071 4.071 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.107 0.893 27 H 0.316 0.684 28 H 0.343 0.657 29 H 0.267 0.733 30 H 0.399 0.601 31 H 0.398 0.602 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.368 12.821 -0.906 15.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.179 4.179 3 C -0.082 4.082 4 C -0.178 4.178 5 C -0.097 4.097 6 C -0.144 4.144 7 C 0.149 3.851 8 H 0.029 0.971 9 N -0.372 5.372 10 C -0.583 4.583 11 H 0.056 0.944 12 C -0.176 4.176 13 N -0.555 5.555 14 Si 0.781 3.219 15 H -0.203 1.203 16 H -0.203 1.203 17 H -0.206 1.206 18 C 0.095 3.905 19 N -0.410 5.410 20 C -0.108 4.108 21 C -0.148 4.148 22 C -0.108 4.108 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.095 0.905 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.158 0.842 29 H 0.076 0.924 30 H 0.230 0.770 31 H 0.227 0.773 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.612 12.957 -1.631 15.644 hybrid contribution 0.633 -1.950 1.823 2.743 sum -7.979 11.007 0.192 13.596 Atomic orbital electron populations 1.20507 0.89684 1.02625 1.02091 1.19075 0.96815 0.90275 1.11747 1.20512 0.93762 0.94938 0.98996 1.20619 0.94833 0.95064 1.07312 1.20224 0.99184 0.90875 0.99410 1.19754 0.92351 0.96181 1.06126 1.17477 0.87114 0.88498 0.91973 0.97121 1.59494 1.05359 1.17319 1.55062 1.21959 1.34917 1.06162 0.95262 0.94436 1.25672 0.94850 0.96642 1.00388 1.69846 1.36443 1.16802 1.32396 0.85571 0.77705 0.78066 0.80586 1.20304 1.20306 1.20563 1.17490 0.90512 0.87022 0.95446 1.42473 1.08545 1.05157 1.84802 1.20938 0.98774 0.89572 1.01537 1.22272 0.92700 0.98141 1.01679 1.21065 0.98667 0.88696 1.02332 0.91226 0.92225 0.90508 0.87453 0.87400 0.84242 0.92394 0.77049 0.77340 0.91337 0.90804 0.88574 0.90798 0.89764 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.36 9.43 71.24 0.67 -1.68 16 2 C -0.17 -6.07 5.90 -19.70 -0.12 -6.18 16 3 C -0.08 -2.68 6.01 -19.51 -0.12 -2.80 16 4 C -0.18 -6.34 6.14 -19.55 -0.12 -6.46 16 5 C -0.08 -3.34 9.25 22.28 0.21 -3.13 16 6 C -0.14 -6.48 5.04 -19.76 -0.10 -6.58 16 7 C 0.26 13.44 2.32 43.42 0.10 13.54 16 8 H 0.01 0.62 7.10 -2.39 -0.02 0.61 16 9 N -0.84 -42.36 8.66 -174.95 -1.52 -43.87 16 10 C -0.54 -29.72 8.48 25.60 0.22 -29.50 16 11 H 0.04 2.15 7.74 -2.91 -0.02 2.12 16 12 C 0.02 1.32 5.38 84.65 0.46 1.78 16 13 N -0.91 -50.66 11.54 21.45 0.25 -50.42 16 14 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 15 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 18 C 0.20 8.28 6.70 38.19 0.26 8.54 16 19 N -0.87 -32.32 8.90 -51.44 -0.46 -32.78 16 20 C -0.07 -1.91 6.77 30.52 0.21 -1.70 16 21 C -0.11 -2.26 7.07 31.50 0.22 -2.03 16 22 C -0.07 -1.63 6.13 30.61 0.19 -1.44 16 23 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.06 1.44 6.54 -2.39 -0.02 1.42 16 25 H 0.08 1.66 7.67 -2.39 -0.02 1.64 16 26 H 0.11 4.61 6.23 -2.91 -0.02 4.59 16 27 H 0.32 15.23 7.28 -89.70 -0.65 14.58 16 28 H 0.34 18.28 7.08 -89.70 -0.63 17.64 16 29 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 30 H 0.40 11.85 6.82 -92.71 -0.63 11.21 16 31 H 0.40 16.45 6.88 -92.71 -0.64 15.81 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -61.38 293.19 0.94 -60.45 By element: Atomic # 1 Polarization: 60.22 SS G_CDS: -1.43 Total: 58.79 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 2.07 Total: -37.66 kcal Atomic # 7 Polarization: -125.34 SS G_CDS: -1.73 Total: -127.06 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -61.38 0.94 -60.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309571260.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.564 kcal (2) G-P(sol) polarization free energy of solvation -61.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds