Wall clock time and date at job start Mon Mar 30 2020 03:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00275 * 2 1 4 4 H 1.48505 * 109.46873 * 269.99814 * 3 2 1 5 5 H 1.48493 * 109.47212 * 30.00158 * 3 2 1 6 6 H 1.48497 * 109.46952 * 150.00290 * 3 2 1 7 7 C 1.37881 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00568 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99610 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.46537 * 180.02562 * 9 7 2 11 11 C 1.46956 * 111.00063 * 66.04815 * 10 9 7 12 12 C 1.53049 * 109.37889 * 183.19787 * 11 10 9 13 13 N 1.46961 * 109.36212 * 301.58202 * 12 11 10 14 14 C 1.46954 * 110.88027 * 59.32899 * 13 12 11 15 15 C 1.46998 * 111.02285 * 189.83316 * 10 9 7 16 16 H 1.08997 * 109.49044 * 296.79247 * 15 10 9 17 17 C 1.50701 * 109.50273 * 56.84571 * 15 10 9 18 18 C 1.38237 * 120.00211 * 39.63022 * 17 15 10 19 19 C 1.38233 * 119.99923 * 179.76993 * 18 17 15 20 20 C 1.38236 * 120.00232 * 0.50913 * 19 18 17 21 21 C 1.38231 * 119.99716 * 359.74726 * 20 19 18 22 22 C 1.38235 * 120.00178 * 359.97438 * 21 20 19 23 23 H 0.97003 * 119.99744 * 0.02562 * 1 2 3 24 24 H 1.08989 * 109.47119 * 60.00334 * 9 7 2 25 25 H 1.09001 * 109.46986 * 299.99795 * 9 7 2 26 26 H 1.09002 * 109.49189 * 63.21630 * 11 10 9 27 27 H 1.09002 * 109.48707 * 303.17388 * 11 10 9 28 28 H 1.08997 * 109.49233 * 61.55148 * 12 11 10 29 29 H 1.09001 * 109.48677 * 181.62146 * 12 11 10 30 30 H 1.00896 * 111.00352 * 295.45411 * 13 12 11 31 31 H 1.09002 * 109.48968 * 60.63766 * 14 13 12 32 32 H 1.08993 * 109.49197 * 180.69056 * 14 13 12 33 33 H 1.08006 * 119.99820 * 0.02562 * 18 17 15 34 34 H 1.08000 * 119.99686 * 180.22984 * 19 18 17 35 35 H 1.07996 * 120.00036 * 179.72601 * 20 19 18 36 36 H 1.08002 * 120.00217 * 179.97438 * 21 20 19 37 37 H 1.08005 * 119.99984 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 2.9711 -3.6542 1.2533 12 6 4.0067 -4.7787 1.1817 13 7 3.3218 -6.0577 0.9475 14 6 2.5563 -6.0199 -0.3064 15 6 1.5206 -4.8952 -0.2349 16 1 0.8267 -5.0913 0.5825 17 6 0.7606 -4.8284 -1.5345 18 6 1.3168 -4.1923 -2.6286 19 6 0.6216 -4.1351 -3.8220 20 6 -0.6342 -4.7049 -3.9184 21 6 -1.1926 -5.3363 -2.8228 22 6 -0.4950 -5.3985 -1.6310 23 1 -0.4850 0.8401 -0.0004 24 1 0.6239 -2.5567 -0.8902 25 1 0.6245 -2.5571 0.8897 26 1 2.2937 -3.8361 2.0876 27 1 3.4790 -2.7007 1.3985 28 1 4.7006 -4.5827 0.3643 29 1 4.5562 -4.8274 2.1219 30 1 2.7276 -6.2978 1.7268 31 1 3.2337 -5.8379 -1.1407 32 1 2.0486 -6.9734 -0.4514 33 1 2.2962 -3.7435 -2.5521 34 1 1.0577 -3.6414 -4.6778 35 1 -1.1791 -4.6564 -4.8495 36 1 -2.1739 -5.7812 -2.8980 37 1 -0.9315 -5.8915 -0.7749 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313330897.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:20 Heat of formation + Delta-G solvation = 32.838111 kcal Electronic energy + Delta-G solvation = -18188.222607 eV Core-core repulsion = 15543.966706 eV Total energy + Delta-G solvation = -2644.255901 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.57728 -37.75180 -34.13844 -32.54173 -31.76246 -30.41708 -28.70250 -27.28219 -24.53104 -23.32717 -22.18934 -21.54368 -20.92245 -19.41342 -16.52861 -16.27571 -15.67839 -15.03544 -14.84961 -14.53465 -14.25169 -13.85828 -13.58285 -13.38553 -12.86948 -12.43452 -12.27917 -12.13792 -11.92826 -11.40339 -11.08908 -10.93014 -10.77438 -10.72544 -10.61379 -10.53856 -10.27176 -9.92104 -9.25020 -8.55556 -8.48213 -8.36515 -7.86089 -7.31921 -6.03560 -4.05183 1.80729 1.90222 3.30097 3.36225 3.39112 4.24029 4.38992 4.54860 4.73320 5.23533 5.31021 5.33555 5.38451 5.52945 5.57740 5.64228 5.71682 5.77423 5.78745 5.94491 6.00443 6.10816 6.30771 6.40946 6.51730 6.52768 6.58467 6.87393 6.98591 7.10683 7.17189 7.31181 7.35739 7.48732 7.57970 7.76750 8.06912 8.14523 8.50546 9.01973 9.58668 11.07122 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.009219 C = 0.006540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.135471 B = 3036.379152 C = 4280.034819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.192 3.808 10 N -0.524 5.524 11 C 0.028 3.972 12 C 0.056 3.944 13 N -0.688 5.688 14 C 0.072 3.928 15 C 0.084 3.916 16 H 0.034 0.966 17 C -0.062 4.062 18 C -0.076 4.076 19 C -0.126 4.126 20 C -0.128 4.128 21 C -0.128 4.128 22 C -0.120 4.120 23 H 0.261 0.739 24 H 0.040 0.960 25 H -0.015 1.015 26 H 0.019 0.981 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.333 0.667 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.132 0.868 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.761 -11.131 -2.567 11.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.249 5.249 11 C -0.102 4.102 12 C -0.074 4.074 13 N -0.315 5.315 14 C -0.059 4.059 15 C -0.026 4.026 16 H 0.052 0.948 17 C -0.063 4.063 18 C -0.095 4.095 19 C -0.144 4.144 20 C -0.146 4.146 21 C -0.146 4.146 22 C -0.138 4.138 23 H 0.070 0.930 24 H 0.058 0.942 25 H 0.002 0.998 26 H 0.037 0.963 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.149 0.851 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.150 0.850 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.520 -11.241 -3.218 11.961 hybrid contribution -1.212 1.649 0.967 2.263 sum 1.308 -9.593 -2.251 9.940 Atomic orbital electron populations 1.69969 1.06046 1.26689 1.50827 1.24978 0.94826 0.99231 0.95478 0.86531 0.79697 0.83249 0.78133 1.20631 1.21355 1.19880 1.21121 0.93347 0.89912 1.50224 0.91972 1.19789 0.90099 0.87022 0.96365 1.62321 1.27648 1.01837 1.33103 1.22684 0.96234 1.00593 0.90680 1.22168 0.96495 0.87034 1.01675 1.60882 1.33513 1.31913 1.05160 1.22097 0.94376 0.96178 0.93199 1.21278 0.94485 0.93236 0.93621 0.94822 1.19648 0.94135 0.97430 0.95048 1.21090 1.00754 0.96103 0.91530 1.21135 0.95262 0.99959 0.98013 1.21025 0.95917 0.99296 0.98357 1.20941 0.99443 1.00793 0.93398 1.20937 0.94530 1.00773 0.97580 0.92970 0.94154 0.99765 0.96331 0.89216 0.90316 0.91085 0.85072 0.90160 0.91092 0.85011 0.86544 0.86857 0.86786 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -14.12 8.47 -34.43 -0.29 -14.41 16 8 H 0.06 1.70 7.12 -52.49 -0.37 1.33 16 9 C 0.19 4.98 4.36 -4.97 -0.02 4.96 16 10 N -0.52 -10.96 3.84 -229.27 -0.88 -11.84 16 11 C 0.03 0.53 5.42 -3.77 -0.02 0.51 16 12 C 0.06 0.85 6.72 -3.77 -0.03 0.83 16 13 N -0.69 -9.93 6.91 -113.63 -0.79 -10.72 16 14 C 0.07 1.09 5.98 -3.76 -0.02 1.06 16 15 C 0.08 1.52 2.16 -68.78 -0.15 1.37 16 16 H 0.03 0.63 8.01 -51.93 -0.42 0.22 16 17 C -0.06 -1.11 3.64 -104.62 -0.38 -1.49 16 18 C -0.08 -1.41 8.24 -39.58 -0.33 -1.73 16 19 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 20 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 21 C -0.13 -1.94 10.05 -39.58 -0.40 -2.33 16 22 C -0.12 -1.97 9.67 -39.58 -0.38 -2.36 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.04 1.13 5.99 -51.94 -0.31 0.82 16 25 H -0.02 -0.44 8.12 -51.93 -0.42 -0.86 16 26 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 1.84 6.78 -51.93 -0.35 1.49 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.33 4.43 8.89 -39.29 -0.35 4.09 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.13 2.55 7.71 -52.48 -0.40 2.15 16 34 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.11 1.66 8.04 -52.48 -0.42 1.24 16 LS Contribution 299.00 15.07 4.51 4.51 Total: -1.00 -29.94 299.00 -9.92 -39.87 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.57 Total: 4.52 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -2.91 Total: -16.90 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -0.93 Total: -48.65 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.94 -9.92 -39.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313330897.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.704 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds