Wall clock time and date at job start Mon Mar 30 2020 03:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00275 * 2 1 4 4 H 1.48505 * 109.46873 * 269.99814 * 3 2 1 5 5 H 1.48493 * 109.47212 * 30.00158 * 3 2 1 6 6 H 1.48497 * 109.46952 * 150.00290 * 3 2 1 7 7 C 1.37881 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00568 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99610 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.46537 * 180.02562 * 9 7 2 11 11 C 1.46956 * 111.00063 * 66.04815 * 10 9 7 12 12 C 1.53049 * 109.37889 * 183.19787 * 11 10 9 13 13 N 1.46961 * 109.36212 * 301.58202 * 12 11 10 14 14 C 1.46954 * 110.88027 * 59.32899 * 13 12 11 15 15 C 1.46998 * 111.02285 * 189.83316 * 10 9 7 16 16 H 1.08997 * 109.49044 * 296.79247 * 15 10 9 17 17 C 1.50701 * 109.50273 * 56.84571 * 15 10 9 18 18 C 1.38237 * 120.00211 * 39.63022 * 17 15 10 19 19 C 1.38233 * 119.99923 * 179.76993 * 18 17 15 20 20 C 1.38236 * 120.00232 * 0.50913 * 19 18 17 21 21 C 1.38231 * 119.99716 * 359.74726 * 20 19 18 22 22 C 1.38235 * 120.00178 * 359.97438 * 21 20 19 23 23 H 0.97003 * 119.99744 * 0.02562 * 1 2 3 24 24 H 1.08989 * 109.47119 * 60.00334 * 9 7 2 25 25 H 1.09001 * 109.46986 * 299.99795 * 9 7 2 26 26 H 1.09002 * 109.49189 * 63.21630 * 11 10 9 27 27 H 1.09002 * 109.48707 * 303.17388 * 11 10 9 28 28 H 1.08997 * 109.49233 * 61.55148 * 12 11 10 29 29 H 1.09001 * 109.48677 * 181.62146 * 12 11 10 30 30 H 1.00896 * 111.00352 * 295.45411 * 13 12 11 31 31 H 1.09002 * 109.48968 * 60.63766 * 14 13 12 32 32 H 1.08993 * 109.49197 * 180.69056 * 14 13 12 33 33 H 1.08006 * 119.99820 * 0.02562 * 18 17 15 34 34 H 1.08000 * 119.99686 * 180.22984 * 19 18 17 35 35 H 1.07996 * 120.00036 * 179.72601 * 20 19 18 36 36 H 1.08002 * 120.00217 * 179.97438 * 21 20 19 37 37 H 1.08005 * 119.99984 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 2.9711 -3.6542 1.2533 12 6 4.0067 -4.7787 1.1817 13 7 3.3218 -6.0577 0.9475 14 6 2.5563 -6.0199 -0.3064 15 6 1.5206 -4.8952 -0.2349 16 1 0.8267 -5.0913 0.5825 17 6 0.7606 -4.8284 -1.5345 18 6 1.3168 -4.1923 -2.6286 19 6 0.6216 -4.1351 -3.8220 20 6 -0.6342 -4.7049 -3.9184 21 6 -1.1926 -5.3363 -2.8228 22 6 -0.4950 -5.3985 -1.6310 23 1 -0.4850 0.8401 -0.0004 24 1 0.6239 -2.5567 -0.8902 25 1 0.6245 -2.5571 0.8897 26 1 2.2937 -3.8361 2.0876 27 1 3.4790 -2.7007 1.3985 28 1 4.7006 -4.5827 0.3643 29 1 4.5562 -4.8274 2.1219 30 1 2.7276 -6.2978 1.7268 31 1 3.2337 -5.8379 -1.1407 32 1 2.0486 -6.9734 -0.4514 33 1 2.2962 -3.7435 -2.5521 34 1 1.0577 -3.6414 -4.6778 35 1 -1.1791 -4.6564 -4.8495 36 1 -2.1739 -5.7812 -2.8980 37 1 -0.9315 -5.8915 -0.7749 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313330897.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:20 Heat of formation + Delta-G solvation = 12.789694 kcal Electronic energy + Delta-G solvation = -18189.091971 eV Core-core repulsion = 15543.966706 eV Total energy + Delta-G solvation = -2645.125266 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.98492 -39.09220 -35.86174 -34.30535 -33.34959 -31.69216 -30.05806 -29.19846 -26.26274 -24.68541 -23.48189 -23.39037 -22.25599 -20.86462 -18.52973 -17.76949 -17.09382 -16.52651 -16.39423 -16.08309 -15.68079 -15.44913 -15.02711 -14.83842 -14.14486 -14.09753 -14.06120 -13.67348 -13.31408 -13.09218 -12.70485 -12.64018 -12.51455 -12.16474 -12.13506 -11.98457 -11.78298 -11.70044 -11.26340 -10.63722 -9.84153 -9.70252 -9.26533 -9.00285 -8.22433 -6.32359 0.52061 0.60990 1.37525 1.38933 1.49712 2.36813 2.93115 3.09469 3.15608 3.33258 3.89027 4.04339 4.11031 4.25092 4.27234 4.28683 4.35646 4.38716 4.51906 4.63383 4.72165 4.82722 4.93018 5.05146 5.07253 5.15713 5.22783 5.26672 5.30790 5.59396 5.62178 5.69726 5.81067 5.91757 6.04806 6.20397 6.27447 6.43663 6.59718 6.83736 7.36969 8.88624 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.009219 C = 0.006540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.135471 B = 3036.379152 C = 4280.034819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.215 3.785 10 N -0.526 5.526 11 C 0.027 3.973 12 C 0.069 3.931 13 N -0.678 5.678 14 C 0.083 3.917 15 C 0.086 3.914 16 H 0.024 0.976 17 C -0.082 4.082 18 C -0.100 4.100 19 C -0.136 4.136 20 C -0.128 4.128 21 C -0.127 4.127 22 C -0.132 4.132 23 H 0.263 0.737 24 H 0.015 0.985 25 H -0.056 1.056 26 H 0.011 0.989 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.343 0.657 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.132 0.868 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.189 -11.922 -3.037 12.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.559 4.559 8 H 0.080 0.920 9 C 0.089 3.911 10 N -0.251 5.251 11 C -0.103 4.103 12 C -0.061 4.061 13 N -0.306 5.306 14 C -0.048 4.048 15 C -0.024 4.024 16 H 0.042 0.958 17 C -0.083 4.083 18 C -0.119 4.119 19 C -0.154 4.154 20 C -0.146 4.146 21 C -0.144 4.144 22 C -0.151 4.151 23 H 0.072 0.928 24 H 0.033 0.967 25 H -0.038 1.038 26 H 0.029 0.971 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.161 0.839 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.129 0.871 34 H 0.150 0.850 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.968 -12.063 -3.680 12.956 hybrid contribution -1.401 1.840 1.095 2.559 sum 1.567 -10.222 -2.585 10.660 Atomic orbital electron populations 1.70104 1.07766 1.27726 1.51804 1.25894 0.95676 1.03113 0.94883 0.85423 0.78614 0.78405 0.78441 1.19898 1.20877 1.18710 1.21431 0.93476 0.91044 1.49929 0.91967 1.19331 0.89989 0.88687 0.93128 1.62234 1.26639 1.02062 1.34185 1.22758 0.96633 1.01381 0.89480 1.22100 0.95233 0.85660 1.03070 1.60887 1.33484 1.30877 1.05304 1.22041 0.93508 0.95872 0.93338 1.21388 0.95112 0.92448 0.93488 0.95796 1.19766 0.95162 0.98531 0.94857 1.21042 1.00549 0.97413 0.92889 1.21410 0.95998 1.00126 0.97825 1.21429 0.95343 0.98085 0.99739 1.21365 1.00493 0.99935 0.92657 1.21209 0.94058 1.00894 0.98917 0.92833 0.96715 1.03815 0.97110 0.91250 0.90630 0.88237 0.83947 0.90801 0.88797 0.87107 0.84959 0.83647 0.83604 0.85559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.52 -29.82 8.47 25.60 0.22 -29.60 16 8 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 9 C 0.21 11.67 4.36 85.56 0.37 12.05 16 10 N -0.53 -22.76 3.84 -879.27 -3.38 -26.14 16 11 C 0.03 1.05 5.42 86.31 0.47 1.51 16 12 C 0.07 2.02 6.72 86.31 0.58 2.60 16 13 N -0.68 -18.33 6.91 -513.42 -3.55 -21.88 16 14 C 0.08 2.42 5.98 86.31 0.52 2.93 16 15 C 0.09 3.13 2.16 44.17 0.10 3.23 16 16 H 0.02 0.92 8.01 -2.39 -0.02 0.90 16 17 C -0.08 -3.02 3.64 -19.86 -0.07 -3.09 16 18 C -0.10 -3.79 8.24 22.27 0.18 -3.60 16 19 C -0.14 -4.41 10.05 22.27 0.22 -4.19 16 20 C -0.13 -3.64 10.05 22.27 0.22 -3.41 16 21 C -0.13 -3.59 10.05 22.27 0.22 -3.37 16 22 C -0.13 -4.28 9.67 22.27 0.22 -4.06 16 23 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 24 H 0.01 0.87 5.99 -2.39 -0.01 0.86 16 25 H -0.06 -3.40 8.12 -2.39 -0.02 -3.42 16 26 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.07 2.92 6.78 -2.39 -0.02 2.90 16 28 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.34 8.41 8.89 -89.70 -0.80 7.62 16 31 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.34 16 33 H 0.11 4.52 7.71 -2.91 -0.02 4.50 16 34 H 0.13 3.73 8.06 -2.91 -0.02 3.70 16 35 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 37 H 0.13 3.61 8.04 -2.91 -0.02 3.59 16 Total: -1.00 -66.19 299.00 -0.66 -66.84 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.25 Total: 19.73 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 3.71 Total: -28.40 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -6.64 Total: -105.02 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -66.19 -0.66 -66.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313330897.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.632 kcal (2) G-P(sol) polarization free energy of solvation -66.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds