Wall clock time and date at job start Mon Mar 30 2020 03:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00015 * 2 1 4 4 H 1.48503 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47157 * 300.00277 * 3 2 1 6 6 H 1.48510 * 109.47199 * 59.99847 * 3 2 1 7 7 C 1.37881 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99690 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46761 * 179.97438 * 9 7 2 11 11 C 1.46956 * 111.00189 * 293.79626 * 10 9 7 12 12 C 1.53053 * 109.36400 * 176.81049 * 11 10 9 13 13 N 1.46952 * 109.36104 * 58.40540 * 12 11 10 14 14 C 1.46956 * 110.88449 * 300.67517 * 13 12 11 15 15 C 1.46958 * 110.99934 * 169.99879 * 10 9 7 16 16 H 1.08998 * 109.49021 * 63.19682 * 15 10 9 17 17 C 1.50706 * 109.48581 * 303.15711 * 15 10 9 18 18 C 1.38237 * 119.99761 * 140.00368 * 17 15 10 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 15 20 20 C 1.38234 * 120.00220 * 359.94731 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00191 * 319.97469 * 17 15 10 23 23 H 0.97003 * 119.99977 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47358 * 59.99533 * 9 7 2 25 25 H 1.08997 * 109.47129 * 299.99517 * 9 7 2 26 26 H 1.08993 * 109.49043 * 296.78400 * 11 10 9 27 27 H 1.09004 * 109.48297 * 56.82239 * 11 10 9 28 28 H 1.09002 * 109.48628 * 178.37144 * 12 11 10 29 29 H 1.08997 * 109.48902 * 298.41675 * 12 11 10 30 30 H 1.00903 * 110.99970 * 176.80769 * 13 12 11 31 31 H 1.08999 * 109.48697 * 299.36170 * 14 13 12 32 32 H 1.08998 * 109.49553 * 179.28993 * 14 13 12 33 33 H 1.08005 * 120.00088 * 359.96779 * 18 17 15 34 34 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 35 35 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 37 37 H 1.07999 * 119.99990 * 0.02562 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9687 -3.6563 -1.2548 12 6 4.0043 -4.7810 -1.1831 13 7 3.3196 -6.0592 -0.9448 14 6 2.5565 -6.0188 0.3105 15 6 1.5210 -4.8940 0.2388 16 1 0.8252 -5.0913 -0.5766 17 6 0.7639 -4.8239 1.5400 18 6 -0.4927 -5.3912 1.6399 19 6 -1.1869 -5.3274 2.8336 20 6 -0.6241 -4.6972 3.9276 21 6 0.6305 -4.1256 3.8264 22 6 1.3263 -4.1928 2.6338 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.2896 -3.8397 -2.0873 27 1 3.4763 -2.7030 -1.4027 28 1 4.5519 -4.8316 -2.1242 29 1 4.7000 -4.5832 -0.3677 30 1 3.9752 -6.8262 -0.9448 31 1 3.2356 -5.8352 1.1430 32 1 2.0486 -6.9718 0.4583 33 1 -0.9321 -5.8843 0.7853 34 1 -2.1688 -5.7702 2.9115 35 1 -1.1664 -4.6477 4.8603 36 1 1.0684 -3.6294 4.6798 37 1 2.3081 -3.7496 2.5557 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313330898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:22 Heat of formation + Delta-G solvation = 34.949896 kcal Electronic energy + Delta-G solvation = -18166.376212 eV Core-core repulsion = 15522.211885 eV Total energy + Delta-G solvation = -2644.164327 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.45738 -37.62339 -34.19754 -32.53303 -31.73199 -30.39753 -28.65934 -27.40540 -24.62274 -23.34418 -22.12845 -21.41531 -20.81648 -18.87753 -16.74390 -16.28482 -15.86226 -14.95788 -14.57531 -14.51546 -14.24705 -13.75616 -13.62681 -13.28904 -13.01657 -12.81435 -12.24594 -12.05775 -11.86088 -11.47269 -11.03787 -10.88746 -10.75926 -10.62778 -10.49125 -10.31610 -10.20383 -9.72232 -9.14169 -8.47017 -8.40530 -8.25841 -8.09475 -7.24773 -5.99693 -4.00969 1.82712 1.92200 3.31199 3.38704 3.42808 4.24906 4.43086 4.48365 4.87260 5.29420 5.34902 5.37673 5.39368 5.46559 5.55773 5.63475 5.78012 5.82019 5.91782 5.98479 6.07262 6.18535 6.26907 6.43811 6.55968 6.61170 6.69001 6.90232 7.00459 7.14069 7.18688 7.39125 7.42619 7.50875 7.56729 7.82364 8.12806 8.22630 8.56676 9.06583 9.62652 11.11006 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016472 B = 0.009217 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.401158 B = 3037.074678 C = 4287.663813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.192 3.808 10 N -0.530 5.530 11 C 0.066 3.934 12 C 0.058 3.942 13 N -0.693 5.693 14 C 0.073 3.927 15 C 0.123 3.877 16 H 0.045 0.955 17 C -0.064 4.064 18 C -0.117 4.117 19 C -0.128 4.128 20 C -0.128 4.128 21 C -0.126 4.126 22 C -0.077 4.077 23 H 0.260 0.740 24 H -0.013 1.013 25 H 0.040 0.960 26 H 0.028 0.972 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.035 0.965 30 H 0.335 0.665 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.961 -11.709 3.330 12.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.255 5.255 11 C -0.063 4.063 12 C -0.072 4.072 13 N -0.323 5.323 14 C -0.057 4.057 15 C 0.013 3.987 16 H 0.063 0.937 17 C -0.065 4.065 18 C -0.136 4.136 19 C -0.146 4.146 20 C -0.146 4.146 21 C -0.145 4.145 22 C -0.095 4.095 23 H 0.069 0.931 24 H 0.005 0.995 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.152 0.848 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.605 -11.335 3.306 12.092 hybrid contribution 0.379 0.923 -0.033 0.998 sum 2.984 -10.413 3.274 11.316 Atomic orbital electron populations 1.69982 1.06011 1.26515 1.50987 1.24976 0.94817 0.99182 0.95561 0.86498 0.80064 0.83698 0.77480 1.19714 1.21156 1.21080 1.21166 0.93358 0.89955 1.49970 0.91980 1.19776 0.90124 0.86944 0.96483 1.62328 1.27888 1.02046 1.33258 1.22005 0.95442 0.97741 0.91073 1.22095 0.95822 0.89381 0.99895 1.60500 1.30391 1.05419 1.36011 1.21954 0.95647 0.97830 0.90285 1.20477 0.93624 0.91315 0.93254 0.93749 1.19717 0.94259 0.97482 0.95063 1.20968 0.94524 1.00490 0.97587 1.20951 0.99443 1.00842 0.93383 1.21025 0.95916 0.99277 0.98361 1.21126 0.95309 0.99998 0.98021 1.21092 1.00677 0.96177 0.91573 0.93059 0.99492 0.94202 0.95328 0.89413 0.91166 0.94656 0.84787 0.94458 0.91188 0.86725 0.86756 0.86878 0.86595 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.51 -14.16 8.47 -34.44 -0.29 -14.45 16 8 H 0.06 1.72 7.13 -52.49 -0.37 1.34 16 9 C 0.19 5.03 4.36 -4.97 -0.02 5.00 16 10 N -0.53 -11.41 3.85 -229.31 -0.88 -12.29 16 11 C 0.07 1.30 5.43 -3.77 -0.02 1.28 16 12 C 0.06 0.90 6.72 -3.77 -0.03 0.87 16 13 N -0.69 -10.16 6.90 -113.64 -0.78 -10.95 16 14 C 0.07 1.13 5.98 -3.77 -0.02 1.11 16 15 C 0.12 2.31 2.16 -68.80 -0.15 2.16 16 16 H 0.04 0.90 8.00 -51.93 -0.42 0.48 16 17 C -0.06 -1.19 3.62 -104.62 -0.38 -1.56 16 18 C -0.12 -1.96 9.67 -39.58 -0.38 -2.35 16 19 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 20 C -0.13 -1.95 10.05 -39.58 -0.40 -2.34 16 21 C -0.13 -2.10 10.05 -39.58 -0.40 -2.49 16 22 C -0.08 -1.43 8.27 -39.58 -0.33 -1.75 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H -0.01 -0.37 8.12 -51.93 -0.42 -0.79 16 25 H 0.04 1.13 6.00 -51.93 -0.31 0.82 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 1.83 6.79 -51.93 -0.35 1.48 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.34 3.95 8.90 -39.29 -0.35 3.60 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.11 1.73 8.04 -52.48 -0.42 1.31 16 34 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 37 H 0.13 2.55 7.72 -52.49 -0.41 2.15 16 LS Contribution 299.06 15.07 4.51 4.51 Total: -1.00 -30.46 299.06 -9.92 -40.38 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.57 Total: 3.21 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -2.91 Total: -15.39 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.93 Total: -49.42 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.46 -9.92 -40.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313330898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.332 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds